Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0004192

Physical Location & Seq

Genomic Coordinates Reverse (-)

36524997 .. 36528018

Gene Structure 3022 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1234100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGATTGGAGCGCCAATGGAGACGAAGGGGCTCAATGCTAACAGAGAAAGCAAGCCCAATCGGAGCCGCAAAGAGATAATCGAGAAGAAGAAGGCCATGGATGCACTGTTAAAAGCAGCTTCTGCTGAAAAGGACCATCTTTCTGCTTTCCCTGCCTTTCGCCGTTACCAAACAAACGATGGGTTATCTGCATTTTTGGAATCAGGACGCGGGGACAAGCTTGCGTCTTCTGTTAAGCATTACATTCAAAATCTTCTTAAGGCCAATATGGAGGGGCTGTATGGATCTGAGTGGCCAGTGGAAGAGAGGGTGAAGCGCAGGGAGATGGTTGCACCTGAAGCACGTTATATATTTGTACGTGAGGCTTCAAATGCAAGTGCTAGTGAAATGTCAACAATGTCGGAGCAAGAAAGTACCTCAGCTAGTTGTGTGGAGAAGAGGGGGCCCATGGTTGGGTTTGTACATTTTCGATTTGTCATAGAGGAAGAATTGCCTGTACTTTACGTGTATGAATTGCAACTCGAGCCTCACGTACAAGGGAAAGGTCTGGGAAAGTTCCTAATGCAACTAATTGAGCTAATTGCTCGCAAGAACCAGATGGGTGCTGTCGTTCTAACTGTTCATAAATCAAACTCGGTAGCCATGAATTTCTATTTAAGTAAGATGAGATACATTATATCAACTATATCACCATCACGAGTTGATCCATTGATATGGATTGAGAAGAGTTATGAAATTCTTTGCAAAGCATTCAGTGATGAGGCTAAAGCTATCTTGGAGGAACCACTTGAGGAGGTTCATCTGGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004402 GO:0004596 GO:0006325 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031365 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0043998 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0051604 GO:0061733 GO:0071704 GO:0071840 GO:1901564 GO:1990189

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

270

Amino Acids

30.44

Weight (kDa)

7.74

Isoelectric Point (pI)

50.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Acetyltransf_1	PF00583	136 - 218	1.4e-09	Acetyltransferase (GNAT) family
Acetyltransf_7	PF13508	144 - 219	3.6e-06	Acetyltransferase (GNAT) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18335 AT1G18335 AT1G18335
fragaria_vesca	FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800
malus_domestica	MD06G1234100.v1.1 MD14G1240800.v1.1
prunus_persica	Prupe.5G238600_v2.0.a1 Prupe.5G238600_v2.0.a1 Prupe.5G238600_v2.0.a1
pyrus_communis	pycom06g20880 pycom14g20230
rosa_chinensis	RchiOBHm_Chr7g0177781
rosa_laevigata	RLG00000005504
rosa_multiflora	Rmu_co8374283.1_g000001 Rmu_sc0006214.1_g000013
rosa_roxburghii	Rroxscaffold_3G00275560
rosa_rugosa	Rorug06G0409400
rosa_samantha	Rh7AG009100 Rh7BG009200 Rh7CG009300 Rh7DG009200
rosa_wichuraiana	Rw7G000750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	210
AciI	CCGC	2 cut(s)	67, 210
AclWI	GGATC	2 cut(s)	292, 698
AcoI	YGGCCR	1 cut(s)	293
AcsI	RAATTY	2 cut(s)	646, 735
AcuI	CTGAAG	1 cut(s)	357
AfaI	GTAC	5 cut(s)	357, 415, 462, 498, 534
AfiI	CCNNNNNNNGG	2 cut(s)	452, 453
AflII	CTTAAG	1 cut(s)	257
AflIII	ACRYGT	1 cut(s)	504
AgsI	TTSAA	2 cut(s)	248, 369
AluBI	AGCT	5 cut(s)	119, 220, 422, 577, 770
AluI	AGCT	5 cut(s)	119, 220, 422, 577, 770
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	2 cut(s)	292, 698
AlwNI	CAGNNNCTG	1 cut(s)	122
Ama87I	CYCGRG	1 cut(s)	521
AoxI	GGCC	4 cut(s)	93, 261, 293, 443
ApaI	GGGCCC	1 cut(s)	447
ApeKI	GCWGC	1 cut(s)	116
ApoI	RAATTY	2 cut(s)	646, 735
AspLEI	GCGC	2 cut(s)	13, 318
AspS9I	GGNCC	3 cut(s)	133, 443, 444
AsuHPI	GGTGA	2 cut(s)	322, 681
AvaI	CYCGRG	1 cut(s)	521
AvaII	GGWCC	1 cut(s)	133
BaeGI	GKGCMC	1 cut(s)	447
BalI	TGGCCA	1 cut(s)	295
BanII	GRGCYC	2 cut(s)	33, 447
BauI	CACGAG	1 cut(s)	696
BbsI	GAAGAC	1 cut(s)	219
BbvCI	CCTCAGC	1 cut(s)	418
BbvI	GCAGC	1 cut(s)	128
BccI	CCATC	5 cut(s)	144, 173, 319, 592, 700
BceAI	ACGGC	1 cut(s)	147
BcoDI	GTCTC	1 cut(s)	14
BfaI	CTAG	2 cut(s)	381, 423
BfoI	RGCGCY	1 cut(s)	14
BfrI	CTTAAG	1 cut(s)	257
BisI	GCNGC	2 cut(s)	67, 117
BlsI	GCNGC	2 cut(s)	68, 118
Bme18I	GGWCC	1 cut(s)	133
BmeT110I	CYCGRG	1 cut(s)	521
BmgT120I	GGNCC	3 cut(s)	133, 443, 444
BmiI	GGNNCC	4 cut(s)	65, 444, 445, 783
BmsI	GCATC	1 cut(s)	91
BpiI	GAAGAC	1 cut(s)	219
Bpu10I	CCTNAGC	1 cut(s)	418
BpuEI	CTTGAG	1 cut(s)	809
BsaAI	YACGTR	3 cut(s)	359, 505, 532
BsaJI	CCNNGG	2 cut(s)	96, 447
BsaXI	ACNNNNNCTCC	2 cut(s)	263, 293
Bsc4I	CCNNNNNNNGG	2 cut(s)	452, 453
Bse1I	ACTGG	1 cut(s)	296
BseDI	CCNNGG	2 cut(s)	96, 447
BseGI	GGATG	1 cut(s)	106
BseLI	CCNNNNNNNGG	2 cut(s)	452, 453
BseMII	CTCAG	2 cut(s)	279, 432
BseNI	ACTGG	1 cut(s)	296
BseRI	GAGGAG	1 cut(s)	806
BseSI	GKGCMC	1 cut(s)	447
BseXI	GCAGC	1 cut(s)	128
Bsh1236I	CGCG	1 cut(s)	210
BshFI	GGCC	4 cut(s)	95, 263, 295, 445
BsiHKCI	CYCGRG	1 cut(s)	521
BslFI	GGGAC	1 cut(s)	227
BslI	CCNNNNNNNGG	2 cut(s)	452, 453
BsmAI	GTCTC	1 cut(s)	14
BsmBI	CGTCTC	1 cut(s)	14
BsmFI	GGGAC	1 cut(s)	227
BsmI	GAATGC	1 cut(s)	749
BsnI	GGCC	4 cut(s)	95, 263, 295, 445
BsoBI	CYCGRG	1 cut(s)	521
Bsp120I	GGGCCC	1 cut(s)	443
Bsp1286I	GDGCHC	2 cut(s)	33, 447
Bsp1407I	TGTACA	1 cut(s)	460
Bsp143I	GATC	2 cut(s)	284, 703
Bsp19I	CCATGG	2 cut(s)	96, 447
BspACI	CCGC	2 cut(s)	67, 210
BspANI	GGCC	4 cut(s)	95, 263, 295, 445
BspCNI	CTCAG	2 cut(s)	280, 431
BspFNI	CGCG	1 cut(s)	210
BspLI	GGNNCC	4 cut(s)	65, 444, 445, 783
BspPI	GGATC	2 cut(s)	292, 698
BspTI	CTTAAG	1 cut(s)	257
BsrGI	TGTACA	1 cut(s)	460
BsrI	ACTGG	1 cut(s)	296
BssECI	CCNNGG	2 cut(s)	96, 447
BssMI	GATC	2 cut(s)	284, 703
BssSI	CACGAG	1 cut(s)	696
BssT1I	CCWWGG	2 cut(s)	96, 447
Bst2BI	CACGAG	1 cut(s)	696
Bst4CI	ACNGT	2 cut(s)	108, 619
Bst6I	CTCTTC	3 cut(s)	297, 431, 719
BstAFI	CTTAAG	1 cut(s)	257
BstAPI	GCANNNNNTGC	1 cut(s)	122
BstAUI	TGTACA	1 cut(s)	460
BstBAI	YACGTR	3 cut(s)	359, 505, 532
BstC8I	GCNNGC	3 cut(s)	53, 222, 586
BstDEI	CTNAG	2 cut(s)	288, 418
BstDSI	CCRYGG	2 cut(s)	96, 447
BstF5I	GGATG	1 cut(s)	106
BstFNI	CGCG	1 cut(s)	210
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	2 cut(s)	13, 318
BstKTI	GATC	2 cut(s)	287, 706
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	2 cut(s)	284, 703
BstMWI	GCNNNNNNNGC	6 cut(s)	101, 122, 152, 338, 371, 523
BstSLI	GKGCMC	1 cut(s)	447
BstUI	CGCG	1 cut(s)	210
BstV1I	GCAGC	1 cut(s)	128
BstV2I	GAAGAC	1 cut(s)	219
BstX2I	RGATCY	1 cut(s)	284
BstXI	CCANNNNNNTGG	1 cut(s)	714
BstYI	RGATCY	1 cut(s)	284
BsuRI	GGCC	4 cut(s)	95, 263, 295, 445
BtgI	CCRYGG	2 cut(s)	96, 447
BtsCI	GGATG	1 cut(s)	106
BtsIMutI	CAGTG	3 cut(s)	104, 303, 760
Cac8I	GCNNGC	3 cut(s)	53, 222, 586
CaiI	CAGNNNCTG	1 cut(s)	122
CfoI	GCGC	2 cut(s)	13, 318
Cfr13I	GGNCC	3 cut(s)	133, 443, 444
CseI	GACGC	2 cut(s)	213, 216
Csp6I	GTAC	5 cut(s)	356, 414, 461, 497, 533
CviAII	CATG	3 cut(s)	97, 448, 643
CviQI	GTAC	5 cut(s)	356, 414, 461, 497, 533
DdeI	CTNAG	2 cut(s)	288, 418
DpnI	GATC	2 cut(s)	286, 705
DpnII	GATC	2 cut(s)	284, 703
EaeI	YGGCCR	1 cut(s)	293
Eam1104I	CTCTTC	3 cut(s)	297, 431, 719
EarI	CTCTTC	3 cut(s)	297, 431, 719
Eco130I	CCWWGG	2 cut(s)	96, 447
Eco24I	GRGCYC	2 cut(s)	33, 447
Eco47I	GGWCC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	357
Eco88I	CYCGRG	1 cut(s)	521
EcoO109I	RGGNCCY	1 cut(s)	443
EcoT14I	CCWWGG	2 cut(s)	96, 447
EcoT38I	GRGCYC	2 cut(s)	33, 447
ErhI	CCWWGG	2 cut(s)	96, 447
Esp3I	CGTCTC	1 cut(s)	14
FaeI	CATG	3 cut(s)	100, 451, 646
FaqI	GGGAC	1 cut(s)	227
FatI	CATG	3 cut(s)	96, 447, 642
FauI	CCCGC	1 cut(s)	203
Fnu4HI	GCNGC	2 cut(s)	67, 117
FokI	GGATG	1 cut(s)	113
FriOI	GRGCYC	2 cut(s)	33, 447
Fsp4HI	GCNGC	2 cut(s)	67, 117
FspBI	CTAG	2 cut(s)	381, 423
GlaI	GCGC	2 cut(s)	12, 317
GluI	GCNGC	2 cut(s)	67, 117
HaeII	RGCGCY	1 cut(s)	14
HaeIII	GGCC	4 cut(s)	95, 263, 295, 445
HgaI	GACGC	2 cut(s)	213, 216
HhaI	GCGC	2 cut(s)	13, 318
Hin1II	CATG	3 cut(s)	100, 451, 646
Hin6I	GCGC	2 cut(s)	11, 316
HinP1I	GCGC	2 cut(s)	11, 316
HincII	GTYRAC	1 cut(s)	393
HindII	GTYRAC	1 cut(s)	393
HindIII	AAGCTT	1 cut(s)	218
HinfI	GANTC	1 cut(s)	200
HphI	GGTGA	2 cut(s)	322, 681
Hpy166II	GTNNAC	1 cut(s)	393
Hpy188I	TCNGA	3 cut(s)	63, 289, 403
Hpy188III	TCNNGA	3 cut(s)	82, 204, 696
Hpy8I	GTNNAC	1 cut(s)	393
HpyAV	CCTTC	2 cut(s)	19, 85
HpyCH4III	ACNGT	2 cut(s)	108, 619
HpyCH4IV	ACGT	4 cut(s)	343, 358, 504, 531
HpyCH4V	TGCA	7 cut(s)	104, 191, 332, 374, 517, 565, 744
HpyF10VI	GCNNNNNNNGC	6 cut(s)	101, 122, 152, 338, 371, 523
HpyF3I	CTNAG	2 cut(s)	288, 418
HpySE526I	ACGT	4 cut(s)	343, 358, 504, 531
Hsp92II	CATG	3 cut(s)	100, 451, 646
HspAI	GCGC	2 cut(s)	11, 316
Kzo9I	GATC	2 cut(s)	284, 703
LmnI	GCTCC	3 cut(s)	8, 63, 403
LpnPI	CCDG	9 cut(s)	165, 189, 304, 309, 348, 507, 533, 608, 788
Lsp1109I	GCAGC	1 cut(s)	128
LweI	GCATC	1 cut(s)	91
MaeI	CTAG	2 cut(s)	381, 423
MaeII	ACGT	4 cut(s)	343, 358, 504, 531
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	2 cut(s)	286, 705
MboI	GATC	2 cut(s)	284, 703
MboII	GAAGA	8 cut(s)	97, 100, 219, 245, 314, 448, 497, 736
MflI	RGATCY	1 cut(s)	284
MhlI	GDGCHC	2 cut(s)	33, 447
MlsI	TGGCCA	1 cut(s)	295
MluCI	AATT	6 cut(s)	488, 512, 570, 579, 646, 735
MluNI	TGGCCA	1 cut(s)	295
MmeI	TCCRAC	1 cut(s)	381
Mox20I	TGGCCA	1 cut(s)	295
MscI	TGGCCA	1 cut(s)	295
MseI	TTAA	5 cut(s)	110, 234, 258, 656, 808
MslI	CAYNNNNRTG	1 cut(s)	712
Msp20I	TGGCCA	1 cut(s)	295
MspCI	CTTAAG	1 cut(s)	257
Mva1269I	GAATGC	1 cut(s)	749
MvnI	CGCG	1 cut(s)	210
MwoI	GCNNNNNNNGC	6 cut(s)	101, 122, 152, 338, 371, 523
NcoI	CCATGG	2 cut(s)	96, 447
NdeII	GATC	2 cut(s)	284, 703
NlaIII	CATG	3 cut(s)	100, 451, 646
NlaIV	GGNNCC	4 cut(s)	65, 444, 445, 783
PaeR7I	CTCGAG	1 cut(s)	521
PcsI	WCGNNNNNNNCGW	1 cut(s)	528
PctI	GAATGC	1 cut(s)	749
PfeI	GAWTC	1 cut(s)	200
PkrI	GCNGC	2 cut(s)	68, 118
Ppu21I	YACGTR	3 cut(s)	359, 505, 532
PspN4I	GGNNCC	4 cut(s)	65, 444, 445, 783
PspOMI	GGGCCC	1 cut(s)	443
PspPI	GGNCC	3 cut(s)	133, 443, 444
PspXI	VCTCGAGB	1 cut(s)	521
PstNI	CAGNNNCTG	1 cut(s)	122
PsuI	RGATCY	1 cut(s)	284
RsaI	GTAC	5 cut(s)	357, 415, 462, 498, 534
RsaNI	GTAC	5 cut(s)	356, 414, 461, 497, 533
RseI	CAYNNNNRTG	1 cut(s)	712
SaqAI	TTAA	5 cut(s)	110, 234, 258, 656, 808
SatI	GCNGC	2 cut(s)	67, 117
Sau3AI	GATC	2 cut(s)	284, 703
Sau96I	GGNCC	3 cut(s)	133, 443, 444
SduI	GDGCHC	2 cut(s)	33, 447
SfaNI	GCATC	1 cut(s)	91
Sfr274I	CTCGAG	1 cut(s)	521
SinI	GGWCC	1 cut(s)	133
SlaI	CTCGAG	1 cut(s)	521
SmiMI	CAYNNNNRTG	1 cut(s)	712
SmlI	CTYRAG	3 cut(s)	257, 521, 788
SmoI	CTYRAG	3 cut(s)	257, 521, 788
Sse9I	AATT	6 cut(s)	488, 512, 570, 579, 646, 735
SsiI	CCGC	2 cut(s)	67, 210
SspMI	CTAG	2 cut(s)	381, 423
StyI	CCWWGG	2 cut(s)	96, 447
TaaI	ACNGT	2 cut(s)	108, 619
TaiI	ACGT	4 cut(s)	346, 361, 507, 534
TaqI	TCGA	3 cut(s)	81, 469, 522
TasI	AATT	6 cut(s)	488, 512, 570, 579, 646, 735
TatI	WGTACW	2 cut(s)	460, 496
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	5 cut(s)	110, 234, 258, 656, 808
Tru9I	TTAA	5 cut(s)	110, 234, 258, 656, 808
TscAI	CASTG	3 cut(s)	111, 303, 760
TseI	GCWGC	1 cut(s)	116
TspDTI	ATGAA	5 cut(s)	525, 611, 659, 747, 788
TspRI	CASTG	3 cut(s)	111, 303, 760
Vha464I	CTTAAG	1 cut(s)	257
VpaK11BI	GGWCC	1 cut(s)	133
XapI	RAATTY	2 cut(s)	646, 735
XcmI	CCANNNNNNNNNTGG	1 cut(s)	176
XhoI	CTCGAG	1 cut(s)	521
XspI	CTAG	2 cut(s)	381, 423

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.