Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0004192

Physical Location & Seq

Genomic Coordinates Reverse (-)

21299299 .. 21301669

Gene Structure 2371 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g20230.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 804 bp

ATGATTGGAGCGCCAATGGAGACCAAGGGGATCAATGCTAACGGAGAAAGCAAGGCCAAGCCGAGCCGCAAAGCGATAATCGAGAAGAAGAAGGCCATGGATGCACTGTTGAAAGCAGCTTCTTCCGAAAGGGACCATCTTTCCGCTTTCCCTGCCTTTCGCCGTTACCAAGCAAACGGCCTGTCTGCATTGTTGGAATCAGGACGAGGGGACAAGCTTTCGTCTACCCTAAAGCATTACATTCAAAATCTTCTTAAGGCAAATATGGAGGGGCTTTATGGATCTGAGTGGCTGGTGGAAGAGAAGGTGAAGCGCAGGGAGATGGCCGCACCTGAAGCACAATATATATTTGTACGCGAGGCTTCAAATGCAAGTGCTAGTGAAATGTTAACAATGTCAGACCAGGAAAGGACCTCAGCTAGTTGTGAGGAGAGGGGGCCCATGGTTGGGTTTGTACATTTTCGATTTGTCATAGAGGAAGAATTGCCTGTTCTTTATGTGTATGAATTGCAGCTTGAGCCTCGCGTACAAGGGAAAGGTCTGGGGAAGTTCCTAATGCAATTAATTGAGCTAATTGCTCGCAAGAACCACATGGGCGCTGTCGTTCTAACTGTCCAAAAGTCAAACTCAGTAGCCATGAATTTATATTTAAGTAAGATGAGATACATCATATCAACTATATCACCATCACGAGTTGATCCATTGATAGGGATTGAGAAGAGTTATGAAATTCTTTGCAAAGCGTTCAGTAATGAGGCTAAAGCTATCTTGGAGGAACCACTTGAGAAGGTTCATCTGGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004402 GO:0004596 GO:0006325 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031365 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0043998 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0051604 GO:0061733 GO:0071704 GO:0071840 GO:1901564 GO:1990189

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

268

Amino Acids

29.86

Weight (kDa)

8.87

Isoelectric Point (pI)

42.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18335 AT1G18335 AT1G18335
fragaria_vesca	FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800
malus_domestica	MD06G1234100.v1.1 MD14G1240800.v1.1
prunus_persica	Prupe.5G238600_v2.0.a1 Prupe.5G238600_v2.0.a1 Prupe.5G238600_v2.0.a1
pyrus_communis	pycom06g20880 pycom14g20230
rosa_chinensis	RchiOBHm_Chr7g0177781
rosa_laevigata	RLG00000005504
rosa_multiflora	Rmu_co8374283.1_g000001 Rmu_sc0006214.1_g000013
rosa_roxburghii	Rroxscaffold_3G00275560
rosa_rugosa	Rorug06G0409400
rosa_samantha	Rh7AG009100 Rh7BG009200 Rh7CG009300 Rh7DG009200
rosa_wichuraiana	Rw7G000750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	224
AccII	CGCG	2 cut(s)	357, 525
AciI	CCGC	3 cut(s)	67, 144, 327
AclWI	GGATC	3 cut(s)	38, 289, 692
AcoI	YGGCCR	1 cut(s)	324
AcsI	RAATTY	2 cut(s)	640, 729
AcuI	CTGAAG	1 cut(s)	354
AfaI	GTAC	3 cut(s)	354, 456, 528
AfiI	CCNNNNNNNGG	3 cut(s)	446, 447, 707
AflII	CTTAAG	1 cut(s)	254
AgsI	TTSAA	3 cut(s)	112, 245, 366
AjnI	CCWGG	1 cut(s)	402
AluBI	AGCT	6 cut(s)	119, 217, 419, 514, 571, 764
AluI	AGCT	6 cut(s)	119, 217, 419, 514, 571, 764
Alw26I	GTCTC	1 cut(s)	14
AlwI	GGATC	3 cut(s)	38, 289, 692
AoxI	GGCC	5 cut(s)	54, 93, 178, 324, 437
ApaI	GGGCCC	1 cut(s)	441
ApeKI	GCWGC	2 cut(s)	116, 511
ApoI	RAATTY	2 cut(s)	640, 729
ArsI	GACNNNNNNTTYG	2 cut(s)	167, 199
AseI	ATTAAT	1 cut(s)	563
AspLEI	GCGC	3 cut(s)	13, 315, 599
AspS9I	GGNCC	4 cut(s)	133, 411, 437, 438
AsuHPI	GGTGA	2 cut(s)	319, 675
AvaII	GGWCC	2 cut(s)	133, 411
BaeGI	GKGCMC	1 cut(s)	441
BanII	GRGCYC	1 cut(s)	441
BauI	CACGAG	1 cut(s)	690
BbvCI	CCTCAGC	1 cut(s)	415
BbvI	GCAGC	2 cut(s)	128, 523
BccI	CCATC	3 cut(s)	144, 316, 694
BceAI	ACGGC	2 cut(s)	147, 193
BciT130I	CCWGG	1 cut(s)	404
BcoDI	GTCTC	1 cut(s)	14
BfaI	CTAG	2 cut(s)	378, 420
BfoI	RGCGCY	2 cut(s)	14, 600
BfrI	CTTAAG	1 cut(s)	254
BisI	GCNGC	4 cut(s)	67, 117, 327, 512
BlsI	GCNGC	4 cut(s)	68, 118, 328, 513
Bme1390I	CCNGG	1 cut(s)	404
Bme18I	GGWCC	2 cut(s)	133, 411
BmgT120I	GGNCC	4 cut(s)	133, 411, 437, 438
BmiI	GGNNCC	4 cut(s)	134, 438, 439, 777
BmrFI	CCNGG	1 cut(s)	404
BmsI	GCATC	1 cut(s)	91
Bpu10I	CCTNAGC	1 cut(s)	415
BpuEI	CTTGAG	2 cut(s)	536, 803
BsaI	GGTCTC	1 cut(s)	14
BsaJI	CCNNGG	3 cut(s)	24, 96, 441
Bsc4I	CCNNNNNNNGG	3 cut(s)	446, 447, 707
BseBI	CCWGG	1 cut(s)	404
BseDI	CCNNGG	3 cut(s)	24, 96, 441
BseGI	GGATG	1 cut(s)	106
BseLI	CCNNNNNNNGG	3 cut(s)	446, 447, 707
BseMII	CTCAG	3 cut(s)	276, 429, 642
BseRI	GAGGAG	1 cut(s)	443
BseSI	GKGCMC	1 cut(s)	441
BseXI	GCAGC	2 cut(s)	128, 523
Bsh1236I	CGCG	2 cut(s)	357, 525
BshFI	GGCC	5 cut(s)	56, 95, 180, 326, 439
BslFI	GGGAC	2 cut(s)	146, 224
BslI	CCNNNNNNNGG	3 cut(s)	446, 447, 707
BsmAI	GTCTC	1 cut(s)	14
BsmFI	GGGAC	2 cut(s)	146, 224
BsnI	GGCC	5 cut(s)	56, 95, 180, 326, 439
Bso31I	GGTCTC	1 cut(s)	14
Bsp120I	GGGCCC	1 cut(s)	437
Bsp1286I	GDGCHC	1 cut(s)	441
Bsp1407I	TGTACA	1 cut(s)	454
Bsp143I	GATC	3 cut(s)	30, 281, 697
Bsp19I	CCATGG	2 cut(s)	96, 441
BspACI	CCGC	3 cut(s)	67, 144, 327
BspANI	GGCC	5 cut(s)	56, 95, 180, 326, 439
BspCNI	CTCAG	3 cut(s)	277, 428, 641
BspFNI	CGCG	2 cut(s)	357, 525
BspLI	GGNNCC	4 cut(s)	134, 438, 439, 777
BspPI	GGATC	3 cut(s)	38, 289, 692
BspTI	CTTAAG	1 cut(s)	254
BspTNI	GGTCTC	1 cut(s)	14
BsrGI	TGTACA	1 cut(s)	454
BssECI	CCNNGG	3 cut(s)	24, 96, 441
BssMI	GATC	3 cut(s)	30, 281, 697
BssSI	CACGAG	1 cut(s)	690
BssT1I	CCWWGG	3 cut(s)	24, 96, 441
Bst2BI	CACGAG	1 cut(s)	690
Bst2UI	CCWGG	1 cut(s)	404
Bst4CI	ACNGT	2 cut(s)	108, 613
Bst6I	CTCTTC	2 cut(s)	294, 713
BstAFI	CTTAAG	1 cut(s)	254
BstAUI	TGTACA	1 cut(s)	454
BstC8I	GCNNGC	1 cut(s)	580
BstDEI	CTNAG	3 cut(s)	285, 415, 628
BstDSI	CCRYGG	2 cut(s)	96, 441
BstF5I	GGATG	1 cut(s)	106
BstFNI	CGCG	2 cut(s)	357, 525
BstH2I	RGCGCY	2 cut(s)	14, 600
BstHHI	GCGC	3 cut(s)	13, 315, 599
BstKTI	GATC	3 cut(s)	33, 284, 700
BstMAI	GTCTC	1 cut(s)	14
BstMBI	GATC	3 cut(s)	30, 281, 697
BstMWI	GCNNNNNNNGC	5 cut(s)	101, 152, 335, 368, 517
BstNI	CCWGG	1 cut(s)	404
BstSCI	CCNGG	1 cut(s)	402
BstSLI	GKGCMC	1 cut(s)	441
BstUI	CGCG	2 cut(s)	357, 525
BstV1I	GCAGC	2 cut(s)	128, 523
BstX2I	RGATCY	1 cut(s)	281
BstYI	RGATCY	1 cut(s)	281
BsuRI	GGCC	5 cut(s)	56, 95, 180, 326, 439
BtgI	CCRYGG	2 cut(s)	96, 441
BtsCI	GGATG	1 cut(s)	106
BtsIMutI	CAGTG	1 cut(s)	104
Cac8I	GCNNGC	1 cut(s)	580
CfoI	GCGC	3 cut(s)	13, 315, 599
Cfr13I	GGNCC	4 cut(s)	133, 411, 437, 438
Csp6I	GTAC	3 cut(s)	353, 455, 527
CviAII	CATG	4 cut(s)	97, 442, 592, 637
CviQI	GTAC	3 cut(s)	353, 455, 527
DdeI	CTNAG	3 cut(s)	285, 415, 628
DpnI	GATC	3 cut(s)	32, 283, 699
DpnII	GATC	3 cut(s)	30, 281, 697
EaeI	YGGCCR	1 cut(s)	324
Eam1104I	CTCTTC	2 cut(s)	294, 713
EarI	CTCTTC	2 cut(s)	294, 713
Eco130I	CCWWGG	3 cut(s)	24, 96, 441
Eco24I	GRGCYC	1 cut(s)	441
Eco31I	GGTCTC	1 cut(s)	14
Eco47I	GGWCC	2 cut(s)	133, 411
Eco57I	CTGAAG	1 cut(s)	354
EcoO109I	RGGNCCY	2 cut(s)	411, 437
EcoRII	CCWGG	1 cut(s)	402
EcoT14I	CCWWGG	3 cut(s)	24, 96, 441
EcoT38I	GRGCYC	1 cut(s)	441
ErhI	CCWWGG	3 cut(s)	24, 96, 441
FaeI	CATG	4 cut(s)	100, 445, 595, 640
FaqI	GGGAC	2 cut(s)	146, 224
FatI	CATG	4 cut(s)	96, 441, 591, 636
FblI	GTMKAC	1 cut(s)	224
Fnu4HI	GCNGC	4 cut(s)	67, 117, 327, 512
FokI	GGATG	1 cut(s)	113
FriOI	GRGCYC	1 cut(s)	441
Fsp4HI	GCNGC	4 cut(s)	67, 117, 327, 512
FspBI	CTAG	2 cut(s)	378, 420
GlaI	GCGC	3 cut(s)	12, 314, 598
GluI	GCNGC	4 cut(s)	67, 117, 327, 512
HaeII	RGCGCY	2 cut(s)	14, 600
HaeIII	GGCC	5 cut(s)	56, 95, 180, 326, 439
HhaI	GCGC	3 cut(s)	13, 315, 599
Hin1II	CATG	4 cut(s)	100, 445, 595, 640
Hin6I	GCGC	3 cut(s)	11, 313, 597
HinP1I	GCGC	3 cut(s)	11, 313, 597
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HindIII	AAGCTT	1 cut(s)	215
HinfI	GANTC	1 cut(s)	197
HpaI	GTTAAC	1 cut(s)	390
HphI	GGTGA	2 cut(s)	319, 675
Hpy166II	GTNNAC	2 cut(s)	225, 390
Hpy188I	TCNGA	3 cut(s)	127, 286, 400
Hpy188III	TCNNGA	3 cut(s)	82, 201, 690
Hpy8I	GTNNAC	2 cut(s)	225, 390
HpyAV	CCTTC	3 cut(s)	85, 298, 781
HpyCH4III	ACNGT	2 cut(s)	108, 613
HpyCH4V	TGCA	6 cut(s)	104, 188, 371, 511, 559, 738
HpyF10VI	GCNNNNNNNGC	5 cut(s)	101, 152, 335, 368, 517
HpyF3I	CTNAG	3 cut(s)	285, 415, 628
Hsp92II	CATG	4 cut(s)	100, 445, 595, 640
HspAI	GCGC	3 cut(s)	11, 313, 597
KspAI	GTTAAC	1 cut(s)	390
Kzo9I	GATC	3 cut(s)	30, 281, 697
LmnI	GCTCC	1 cut(s)	8
Lsp1109I	GCAGC	2 cut(s)	128, 523
LweI	GCATC	1 cut(s)	91
MaeI	CTAG	2 cut(s)	378, 420
MaeIII	GTNAC	1 cut(s)	164
MalI	GATC	3 cut(s)	32, 283, 699
MboI	GATC	3 cut(s)	30, 281, 697
MboII	GAAGA	7 cut(s)	97, 100, 114, 242, 311, 491, 730
MflI	RGATCY	1 cut(s)	281
MhlI	GDGCHC	1 cut(s)	441
MluCI	AATT	7 cut(s)	482, 506, 560, 564, 573, 640, 729
MmeI	TCCRAC	1 cut(s)	174
MseI	TTAA	5 cut(s)	255, 389, 563, 650, 802
MspCI	CTTAAG	1 cut(s)	254
MspR9I	CCNGG	1 cut(s)	404
MvaI	CCWGG	1 cut(s)	404
MvnI	CGCG	2 cut(s)	357, 525
MwoI	GCNNNNNNNGC	5 cut(s)	101, 152, 335, 368, 517
NcoI	CCATGG	2 cut(s)	96, 441
NdeII	GATC	3 cut(s)	30, 281, 697
NlaIII	CATG	4 cut(s)	100, 445, 595, 640
NlaIV	GGNNCC	4 cut(s)	134, 438, 439, 777
NmeAIII	GCCGAG	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	197
PkrI	GCNGC	4 cut(s)	68, 118, 328, 513
PpuMI	RGGWCCY	1 cut(s)	411
PshBI	ATTAAT	1 cut(s)	563
Psp5II	RGGWCCY	1 cut(s)	411
Psp6I	CCWGG	1 cut(s)	402
PspGI	CCWGG	1 cut(s)	402
PspN4I	GGNNCC	4 cut(s)	134, 438, 439, 777
PspOMI	GGGCCC	1 cut(s)	437
PspPI	GGNCC	4 cut(s)	133, 411, 437, 438
PspPPI	RGGWCCY	1 cut(s)	411
PsuI	RGATCY	1 cut(s)	281
RsaI	GTAC	3 cut(s)	354, 456, 528
RsaNI	GTAC	3 cut(s)	353, 455, 527
SaqAI	TTAA	5 cut(s)	255, 389, 563, 650, 802
SatI	GCNGC	4 cut(s)	67, 117, 327, 512
Sau3AI	GATC	3 cut(s)	30, 281, 697
Sau96I	GGNCC	4 cut(s)	133, 411, 437, 438
ScrFI	CCNGG	1 cut(s)	404
SduI	GDGCHC	1 cut(s)	441
SfaNI	GCATC	1 cut(s)	91
SinI	GGWCC	2 cut(s)	133, 411
SmlI	CTYRAG	3 cut(s)	254, 515, 782
SmoI	CTYRAG	3 cut(s)	254, 515, 782
Sse9I	AATT	7 cut(s)	482, 506, 560, 564, 573, 640, 729
SsiI	CCGC	3 cut(s)	67, 144, 327
SspMI	CTAG	2 cut(s)	378, 420
StyD4I	CCNGG	1 cut(s)	402
StyI	CCWWGG	3 cut(s)	24, 96, 441
TaaI	ACNGT	2 cut(s)	108, 613
TaqI	TCGA	2 cut(s)	81, 463
TasI	AATT	7 cut(s)	482, 506, 560, 564, 573, 640, 729
TatI	WGTACW	1 cut(s)	454
TauI	GCSGC	2 cut(s)	69, 329
TfiI	GAWTC	1 cut(s)	197
Tru1I	TTAA	5 cut(s)	255, 389, 563, 650, 802
Tru9I	TTAA	5 cut(s)	255, 389, 563, 650, 802
TscAI	CASTG	1 cut(s)	111
TseI	GCWGC	2 cut(s)	116, 511
TspDTI	ATGAA	4 cut(s)	519, 653, 741, 782
TspGWI	ACGGA	1 cut(s)	57
TspRI	CASTG	1 cut(s)	111
Vha464I	CTTAAG	1 cut(s)	254
VpaK11BI	GGWCC	2 cut(s)	133, 411
VspI	ATTAAT	1 cut(s)	563
XapI	RAATTY	2 cut(s)	640, 729
XmiI	GTMKAC	1 cut(s)	224
XspI	CTAG	2 cut(s)	378, 420

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.