Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8374283.1

Orthogroup ID

OG0004192

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 554

Gene Structure 554 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8374283.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

gctaatatggaggggccatatggaaccgagtggccagtggaagagaaggtgaagcgtagggagatggttgcatcagaagcacgttatatatttgtccatgaggctttggatgcaagtgcaagtgaattgttgacagtgtctgagcaggagaggactgaagcttgttgtgtggaggggaggggatccatgctcgggtttgtgcattttcgctttgtcatagaggaagatttgcctgttctttatgtgtatgagttacaacttgagcctcgtgtgcaagggaaaggtctcggcaagttcctaatgcaactaattgagctaattgctcgcaaggtgctgaattccgtctcttctcccattttatgcttttattttatagacatctcagtattatgcaaaatggaaaggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004402 GO:0004596 GO:0006325 GO:0006464 GO:0006473 GO:0006474 GO:0006475 GO:0006807 GO:0006996 GO:0008080 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0010485 GO:0016043 GO:0016407 GO:0016410 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019538 GO:0031365 GO:0034212 GO:0036211 GO:0043170 GO:0043412 GO:0043543 GO:0043967 GO:0043968 GO:0043998 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0051276 GO:0051604 GO:0061733 GO:0071704 GO:0071840 GO:1901564 GO:1990189

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Acetyltransf_1

Protein Analysis

135

Amino Acids

15.45

Weight (kDa)

5.01

Isoelectric Point (pI)

51.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004192)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18335 AT1G18335 AT1G18335
fragaria_vesca	FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800 FvH4_5g17800
malus_domestica	MD06G1234100.v1.1 MD14G1240800.v1.1
prunus_persica	Prupe.5G238600_v2.0.a1 Prupe.5G238600_v2.0.a1 Prupe.5G238600_v2.0.a1
pyrus_communis	pycom06g20880 pycom14g20230
rosa_chinensis	RchiOBHm_Chr7g0177781
rosa_laevigata	RLG00000005504
rosa_multiflora	Rmu_co8374283.1_g000001 Rmu_sc0006214.1_g000013
rosa_roxburghii	Rroxscaffold_3G00275560
rosa_rugosa	Rorug06G0409400
rosa_samantha	Rh7AG009100 Rh7BG009200 Rh7CG009300 Rh7DG009200
rosa_wichuraiana	Rw7G000750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	177, 190
AcoI	YGGCCR	1 cut(s)	32
AcsI	RAATTY	1 cut(s)	337
AcuI	CTGAAG	1 cut(s)	177
AfiI	CCNNNNNNNGG	1 cut(s)	192
AluBI	AGCT	2 cut(s)	161, 316
AluI	AGCT	2 cut(s)	161, 316
Alw26I	GTCTC	2 cut(s)	290, 349
AlwI	GGATC	2 cut(s)	177, 190
AlwNI	CAGNNNCTG	1 cut(s)	140
Ama87I	CYCGRG	1 cut(s)	191
AoxI	GGCC	2 cut(s)	14, 32
ApoI	RAATTY	1 cut(s)	337
AspS9I	GGNCC	1 cut(s)	14
AsuHPI	GGTGA	1 cut(s)	61
AvaI	CYCGRG	1 cut(s)	191
BalI	TGGCCA	1 cut(s)	34
BamHI	GGATCC	1 cut(s)	182
BauI	CACGAG	1 cut(s)	267
BccI	CCATC	1 cut(s)	58
BcoDI	GTCTC	2 cut(s)	290, 349
BmeT110I	CYCGRG	1 cut(s)	191
BmgT120I	GGNCC	1 cut(s)	14
BmiI	GGNNCC	3 cut(s)	15, 25, 184
BmsI	GCATC	2 cut(s)	80, 100
BpuEI	CTTGAG	1 cut(s)	281
BsaI	GGTCTC	1 cut(s)	290
Bsc4I	CCNNNNNNNGG	1 cut(s)	192
Bse1I	ACTGG	1 cut(s)	35
BseGI	GGATG	1 cut(s)	115
BseLI	CCNNNNNNNGG	1 cut(s)	192
BseMII	CTCAG	2 cut(s)	132, 396
BseNI	ACTGG	1 cut(s)	35
BshFI	GGCC	2 cut(s)	16, 34
BsiHKCI	CYCGRG	1 cut(s)	191
BslI	CCNNNNNNNGG	1 cut(s)	192
BsmAI	GTCTC	2 cut(s)	290, 349
BsmBI	CGTCTC	1 cut(s)	349
BsnI	GGCC	2 cut(s)	16, 34
Bso31I	GGTCTC	1 cut(s)	290
BsoBI	CYCGRG	1 cut(s)	191
Bsp143I	GATC	1 cut(s)	182
BspANI	GGCC	2 cut(s)	16, 34
BspCNI	CTCAG	2 cut(s)	133, 395
BspLI	GGNNCC	3 cut(s)	15, 25, 184
BspPI	GGATC	2 cut(s)	177, 190
BspTNI	GGTCTC	1 cut(s)	290
BsrI	ACTGG	1 cut(s)	35
BssMI	GATC	1 cut(s)	182
BssSI	CACGAG	1 cut(s)	267
Bst2BI	CACGAG	1 cut(s)	267
Bst4CI	ACNGT	1 cut(s)	136
Bst6I	CTCTTC	2 cut(s)	36, 352
BstC8I	GCNNGC	1 cut(s)	325
BstDEI	CTNAG	2 cut(s)	141, 382
BstF5I	GGATG	1 cut(s)	115
BstKTI	GATC	1 cut(s)	185
BstMAI	GTCTC	2 cut(s)	290, 349
BstMBI	GATC	1 cut(s)	182
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 110, 271
BstX2I	RGATCY	1 cut(s)	182
BstYI	RGATCY	1 cut(s)	182
BsuRI	GGCC	2 cut(s)	16, 34
BtsCI	GGATG	1 cut(s)	115
BtsIMutI	CAGTG	2 cut(s)	42, 141
Cac8I	GCNNGC	1 cut(s)	325
CaiI	CAGNNNCTG	1 cut(s)	140
Cfr13I	GGNCC	1 cut(s)	14
CviAII	CATG	2 cut(s)	98, 187
CviJI	RGCY	6 cut(s)	16, 34, 104, 161, 265, 316
CviKI_1	RGCY	6 cut(s)	16, 34, 104, 161, 265, 316
DdeI	CTNAG	2 cut(s)	141, 382
DpnI	GATC	1 cut(s)	184
DpnII	GATC	1 cut(s)	182
EaeI	YGGCCR	1 cut(s)	32
Eam1104I	CTCTTC	2 cut(s)	36, 352
EarI	CTCTTC	2 cut(s)	36, 352
Eco31I	GGTCTC	1 cut(s)	290
Eco57I	CTGAAG	1 cut(s)	177
Eco88I	CYCGRG	1 cut(s)	191
EcoRI	GAATTC	1 cut(s)	337
Esp3I	CGTCTC	1 cut(s)	349
FaeI	CATG	2 cut(s)	101, 190
FatI	CATG	2 cut(s)	97, 186
FauNDI	CATATG	1 cut(s)	19
FokI	GGATG	1 cut(s)	122
HaeIII	GGCC	2 cut(s)	16, 34
Hin1II	CATG	2 cut(s)	101, 190
HincII	GTYRAC	1 cut(s)	132
HindII	GTYRAC	1 cut(s)	132
HindIII	AAGCTT	1 cut(s)	159
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188I	TCNGA	2 cut(s)	76, 142
Hpy8I	GTNNAC	1 cut(s)	132
HpyAV	CCTTC	1 cut(s)	40
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	1 cut(s)	82
HpyCH4V	TGCA	7 cut(s)	71, 113, 119, 202, 274, 304, 393
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 110, 271
HpyF3I	CTNAG	2 cut(s)	141, 382
HpySE526I	ACGT	1 cut(s)	82
Hsp92II	CATG	2 cut(s)	101, 190
Kzo9I	GATC	1 cut(s)	182
LpnPI	CCDG	3 cut(s)	48, 131, 246
LweI	GCATC	2 cut(s)	80, 100
MaeII	ACGT	1 cut(s)	82
MaeIII	GTNAC	1 cut(s)	252
MalI	GATC	1 cut(s)	184
MboI	GATC	1 cut(s)	182
MboII	GAAGA	3 cut(s)	53, 236, 339
MflI	RGATCY	1 cut(s)	182
MlsI	TGGCCA	1 cut(s)	34
MluCI	AATT	4 cut(s)	125, 309, 318, 337
MluNI	TGGCCA	1 cut(s)	34
MnlI	CCTC	7 cut(s)	4, 94, 144, 166, 171, 214, 276
Mox20I	TGGCCA	1 cut(s)	34
MscI	TGGCCA	1 cut(s)	34
Msp20I	TGGCCA	1 cut(s)	34
MwoI	GCNNNNNNNGC	3 cut(s)	77, 110, 271
NdeI	CATATG	1 cut(s)	19
NdeII	GATC	1 cut(s)	182
NlaIII	CATG	2 cut(s)	101, 190
NlaIV	GGNNCC	3 cut(s)	15, 25, 184
NmeAIII	GCCGAG	1 cut(s)	267
PflFI	GACNNNGTC	1 cut(s)	136
PspN4I	GGNNCC	3 cut(s)	15, 25, 184
PspPI	GGNCC	1 cut(s)	14
PstNI	CAGNNNCTG	1 cut(s)	140
PsuI	RGATCY	1 cut(s)	182
PsyI	GACNNNGTC	1 cut(s)	136
Sau3AI	GATC	1 cut(s)	182
Sau96I	GGNCC	1 cut(s)	14
SetI	ASST	7 cut(s)	51, 85, 163, 286, 318, 333, 407
SfaNI	GCATC	2 cut(s)	80, 100
SmlI	CTYRAG	1 cut(s)	260
SmoI	CTYRAG	1 cut(s)	260
Sse9I	AATT	4 cut(s)	125, 309, 318, 337
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	1 cut(s)	85
TasI	AATT	4 cut(s)	125, 309, 318, 337
TscAI	CASTG	2 cut(s)	42, 141
TspGWI	ACGGA	1 cut(s)	331
TspRI	CASTG	2 cut(s)	42, 141
Tth111I	GACNNNGTC	1 cut(s)	136
XapI	RAATTY	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.