FvH4_5g23480

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0008139
Physical Location & Seq
Forward (+)
14806681 .. 14808967
2287 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g23480.t6

Sequence Viewer

Length: 273 bp
ATGGCAAAATCTGGCAAATCAAACTGTTCCGATCGCCGGAACAAATACCTGAAGCCCAATCTGGGTGGTGGCCGGAAATCGGGTGCTGGGAAATTGGCTACTCAACTCCATGGTTTGGCGCTGGGAGACAAAACCCCTCCCTCGCCGCCTAAGTCACCAAAGAGCCCGATCCCTAACCCTGCATCACCTCCTACTCCTGATGCACCCATGAGGCTCGTTCGCCGGCCACCGTCTCGCCTCCGTGGCGCGGATTTGCGACAGGCTTTTGATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

9.53

Weight (kDa)

11.3

Isoelectric Point (pI)

63.82

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 115
AccII CGCG 1 cut(s) 248
AciI CCGC 2 cut(s) 146, 248
AclWI GGATC 1 cut(s) 163
AcoI YGGCCR 2 cut(s) 70, 224
AcuI CTGAAG 1 cut(s) 71
AfiI CCNNNNNNNGG 5 cut(s) 36, 62, 79, 115, 247
Alw26I GTCTC 2 cut(s) 120, 237
AlwI GGATC 1 cut(s) 163
AoxI GGCC 2 cut(s) 70, 224
AspLEI GCGC 2 cut(s) 121, 248
AsuHPI GGTGA 2 cut(s) 147, 177
BanII GRGCYC 1 cut(s) 167
BcoDI GTCTC 2 cut(s) 120, 237
BfoI RGCGCY 1 cut(s) 122
BglI GCCNNNNNGGC 1 cut(s) 243
BisI GCNGC 1 cut(s) 146
BlsI GCNGC 1 cut(s) 147
BmsI GCATC 2 cut(s) 190, 191
BsaJI CCNNGG 2 cut(s) 109, 241
Bsc4I CCNNNNNNNGG 5 cut(s) 36, 62, 79, 115, 247
Bse118I RCCGGY 1 cut(s) 222
BseDI CCNNGG 2 cut(s) 109, 241
BseLI CCNNNNNNNGG 5 cut(s) 36, 62, 79, 115, 247
BseYI CCCAGC 2 cut(s) 86, 121
Bsh1236I CGCG 1 cut(s) 248
Bsh1285I CGRYCG 1 cut(s) 34
BshFI GGCC 2 cut(s) 72, 226
BsiEI CGRYCG 1 cut(s) 34
BsiSI CCGG 3 cut(s) 37, 73, 223
BslI CCNNNNNNNGG 5 cut(s) 36, 62, 79, 115, 247
BsmAI GTCTC 2 cut(s) 120, 237
BsmBI CGTCTC 1 cut(s) 237
BsnI GGCC 2 cut(s) 72, 226
Bsp1286I GDGCHC 1 cut(s) 167
Bsp143I GATC 2 cut(s) 31, 168
Bsp19I CCATGG 1 cut(s) 109
BspACI CCGC 2 cut(s) 146, 248
BspANI GGCC 2 cut(s) 72, 226
BspFNI CGCG 1 cut(s) 248
BspPI GGATC 1 cut(s) 163
BsrFI RCCGGY 1 cut(s) 222
BssAI RCCGGY 1 cut(s) 222
BssECI CCNNGG 2 cut(s) 109, 241
BssMI GATC 2 cut(s) 31, 168
BssT1I CCWWGG 1 cut(s) 109
Bst4CI ACNGT 2 cut(s) 26, 231
BstC8I GCNNGC 1 cut(s) 224
BstDEI CTNAG 1 cut(s) 150
BstDSI CCRYGG 2 cut(s) 109, 241
BstFNI CGCG 1 cut(s) 248
BstH2I RGCGCY 1 cut(s) 122
BstHHI GCGC 2 cut(s) 121, 248
BstKTI GATC 2 cut(s) 34, 171
BstMAI GTCTC 2 cut(s) 120, 237
BstMBI GATC 2 cut(s) 31, 168
BstMCI CGRYCG 1 cut(s) 34
BstMWI GCNNNNNNNGC 1 cut(s) 243
BstUI CGCG 1 cut(s) 248
BsuRI GGCC 2 cut(s) 72, 226
BtgI CCRYGG 2 cut(s) 109, 241
Cac8I GCNNGC 1 cut(s) 224
CfoI GCGC 2 cut(s) 121, 248
Cfr10I RCCGGY 1 cut(s) 222
CspCI CAANNNNNGTGG 2 cut(s) 46, 81
CviAII CATG 2 cut(s) 110, 208
CviJI RGCY 7 cut(s) 55, 72, 98, 165, 214, 226, 263
CviKI_1 RGCY 7 cut(s) 55, 72, 98, 165, 214, 226, 263
DdeI CTNAG 1 cut(s) 150
DpnI GATC 2 cut(s) 33, 170
DpnII GATC 2 cut(s) 31, 168
EaeI YGGCCR 2 cut(s) 70, 224
Eco130I CCWWGG 1 cut(s) 109
Eco24I GRGCYC 1 cut(s) 167
Eco57I CTGAAG 1 cut(s) 71
EcoT14I CCWWGG 1 cut(s) 109
EcoT38I GRGCYC 1 cut(s) 167
ErhI CCWWGG 1 cut(s) 109
Esp3I CGTCTC 1 cut(s) 237
FaeI CATG 2 cut(s) 113, 211
FaiI YATR 2 cut(s) 111, 209
FatI CATG 2 cut(s) 109, 207
Fnu4HI GCNGC 1 cut(s) 146
FriOI GRGCYC 1 cut(s) 167
Fsp4HI GCNGC 1 cut(s) 146
GlaI GCGC 2 cut(s) 120, 247
GluI GCNGC 1 cut(s) 146
GsaI CCCAGC 2 cut(s) 90, 125
HaeII RGCGCY 1 cut(s) 122
HaeIII GGCC 2 cut(s) 72, 226
HapII CCGG 3 cut(s) 37, 73, 223
HhaI GCGC 2 cut(s) 121, 248
Hin1II CATG 2 cut(s) 113, 211
Hin6I GCGC 2 cut(s) 119, 246
HinP1I GCGC 2 cut(s) 119, 246
HpaII CCGG 3 cut(s) 37, 73, 223
HphI GGTGA 2 cut(s) 147, 177
Hpy188I TCNGA 1 cut(s) 31
Hpy188III TCNNGA 1 cut(s) 197
HpyCH4III ACNGT 2 cut(s) 26, 231
HpyCH4V TGCA 2 cut(s) 182, 203
HpyF10VI GCNNNNNNNGC 1 cut(s) 243
HpyF3I CTNAG 1 cut(s) 150
Hsp92II CATG 2 cut(s) 113, 211
HspAI GCGC 2 cut(s) 119, 246
KroI GCCGGC 1 cut(s) 222
KroNI GCCGGC 1 cut(s) 224
Kzo9I GATC 2 cut(s) 31, 168
LweI GCATC 2 cut(s) 190, 191
MaeIII GTNAC 1 cut(s) 153
MalI GATC 2 cut(s) 33, 170
MboI GATC 2 cut(s) 31, 168
MhlI GDGCHC 1 cut(s) 167
MluCI AATT 1 cut(s) 92
MnlI CCTC 5 cut(s) 147, 151, 198, 204, 248
MroNI GCCGGC 1 cut(s) 222
MspI CCGG 3 cut(s) 37, 73, 223
MvnI CGCG 1 cut(s) 248
MwoI GCNNNNNNNGC 1 cut(s) 243
NaeI GCCGGC 1 cut(s) 224
NcoI CCATGG 1 cut(s) 109
NdeII GATC 2 cut(s) 31, 168
NgoMIV GCCGGC 1 cut(s) 222
NlaIII CATG 2 cut(s) 113, 211
NmuCI GTSAC 1 cut(s) 153
PdiI GCCGGC 1 cut(s) 224
PflMI CCANNNNNTGG 1 cut(s) 115
PkrI GCNGC 1 cut(s) 147
Ple19I CGATCG 1 cut(s) 34
PspFI CCCAGC 2 cut(s) 86, 121
PvuI CGATCG 1 cut(s) 34
SatI GCNGC 1 cut(s) 146
Sau3AI GATC 2 cut(s) 31, 168
SduI GDGCHC 1 cut(s) 167
SetI ASST 2 cut(s) 51, 190
SfaNI GCATC 2 cut(s) 190, 191
Sse9I AATT 1 cut(s) 92
SsiI CCGC 2 cut(s) 146, 248
StyI CCWWGG 1 cut(s) 109
TaaI ACNGT 2 cut(s) 26, 231
TasI AATT 1 cut(s) 92
TauI GCSGC 1 cut(s) 148
TseFI GTSAC 1 cut(s) 153
Tsp45I GTSAC 1 cut(s) 153
TspGWI ACGGA 1 cut(s) 230
Van91I CCANNNNNTGG 1 cut(s) 115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.