Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0008139

Physical Location & Seq

Genomic Coordinates Forward (+)

29158129 .. 29159867

Gene Structure 1739 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG286800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGCTTGGCTTCTCCTCGTCTGATCATCTCTCTCTCGACCTCACCAACTCTTTCGCTCTCTCCATCTCCATCATGGCAAAGCTCTCTGATTCCCGCAATTCCAACCGTTCCGATCGTCGGAACAAATACCTGAAGCCGAATCCGGGTGGCCGGAAATCGGGTCCTCGGAAATTGGCGACTCTATTCCAGGGTTTGGGGCTCCAAGACAAAACCCCTCCTTTCATGTTGTCGCCTACGTCCGCAAAGAGCCCTAGCCCTAACCCTAGATCTGGAATCCCGAGCGCACCTCCTACTCCCAATGCACCGGCGAGGCACGGGCTCCGGCCACCGTCTCGCCTCCGGGGCTCGGATATGCGGCAGGTTACGGCTGTTCTCTTTCAGAGCCAGATTTCTCTTTGCAATTTTAAGCCTTCCGCTAAAGTTTTCTTCTTTGAGGAAGAGGTGTCTGAGGCGCGTGTTTTGTTTAGTGGGTTAAGCCTAGATTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

162

Amino Acids

17.6

Weight (kDa)

10.71

Isoelectric Point (pI)

58.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008139)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23480 FvH4_5g23480 FvH4_5g23480 FvH4_5g23480 FvH4_5g23480 FvH4_5g23480
rosa_chinensis	RchiOBHm_Chr7g0212721 RchiOBHm_Chr7g0212751 RchiOBHm_Chr7g0219121
rosa_laevigata	RLG00000002874
rosa_roxburghii	Rroxscaffold_3G00240340 Rroxscaffold_3G00240370 Rroxscaffold_3G00240490 Rroxscaffold_3G00246600 Rroxscaffold_7G00194690
rosa_rugosa	Rorug07G0136200
rosa_samantha	Rh7AG267700 Rh7BG258600 Rh7BG258800 Rh7BG263300 Rh7CG286800 Rh7CG291500 Rh7DG275800 Rh7DG276000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	349
AccB7I	CCANNNNNTGG	1 cut(s)	193
AccII	CGCG	1 cut(s)	454
AciI	CCGC	4 cut(s)	94, 240, 355, 414
AcoI	YGGCCR	2 cut(s)	148, 323
AcuI	CTGAAG	1 cut(s)	152
AfiI	CCNNNNNNNGG	6 cut(s)	117, 143, 157, 193, 269, 346
AjnI	CCWGG	1 cut(s)	186
AluBI	AGCT	1 cut(s)	82
AluI	AGCT	1 cut(s)	82
Alw26I	GTCTC	1 cut(s)	336
Ama87I	CYCGRG	1 cut(s)	277
AoxI	GGCC	2 cut(s)	148, 323
AspLEI	GCGC	2 cut(s)	284, 454
AspS9I	GGNCC	1 cut(s)	161
AsuC2I	CCSGG	2 cut(s)	144, 341
AsuHPI	GGTGA	1 cut(s)	34
AvaI	CYCGRG	1 cut(s)	277
AvaII	GGWCC	1 cut(s)	161
BanII	GRGCYC	4 cut(s)	201, 251, 321, 347
BccI	CCATC	2 cut(s)	71, 77
BceAI	ACGGC	1 cut(s)	381
BciT130I	CCWGG	1 cut(s)	188
BclI	TGATCA	1 cut(s)	22
BcnI	CCSGG	2 cut(s)	144, 341
BcoDI	GTCTC	1 cut(s)	336
BfaI	CTAG	3 cut(s)	252, 264, 479
BfuAI	ACCTGC	1 cut(s)	349
BglI	GCCNNNNNGGC	1 cut(s)	342
BglII	AGATCT	1 cut(s)	266
BisI	GCNGC	1 cut(s)	356
BlsI	GCNGC	1 cut(s)	357
Bme1390I	CCNGG	3 cut(s)	144, 188, 341
Bme18I	GGWCC	1 cut(s)	161
BmeT110I	CYCGRG	1 cut(s)	277
BmgT120I	GGNCC	1 cut(s)	161
BmiI	GGNNCC	3 cut(s)	162, 200, 320
BmrFI	CCNGG	3 cut(s)	144, 188, 341
BplI	GAGNNNNNCTC	2 cut(s)	271, 303
BpuMI	CCSGG	2 cut(s)	144, 341
BsaJI	CCNNGG	3 cut(s)	164, 187, 340
Bsc4I	CCNNNNNNNGG	6 cut(s)	117, 143, 157, 193, 269, 346
Bse118I	RCCGGY	1 cut(s)	304
BseBI	CCWGG	1 cut(s)	188
BseDI	CCNNGG	3 cut(s)	164, 187, 340
BseLI	CCNNNNNNNGG	6 cut(s)	117, 143, 157, 193, 269, 346
BseMII	CTCAG	1 cut(s)	438
BseRI	GAGGAG	1 cut(s)	4
Bsh1236I	CGCG	1 cut(s)	454
Bsh1285I	CGRYCG	1 cut(s)	115
BshFI	GGCC	2 cut(s)	150, 325
BsiEI	CGRYCG	1 cut(s)	115
BsiHKCI	CYCGRG	1 cut(s)	277
BsiSI	CCGG	5 cut(s)	143, 151, 305, 322, 340
BslI	CCNNNNNNNGG	6 cut(s)	117, 143, 157, 193, 269, 346
BsmAI	GTCTC	1 cut(s)	336
BsmBI	CGTCTC	1 cut(s)	336
BsnI	GGCC	2 cut(s)	150, 325
BsoBI	CYCGRG	1 cut(s)	277
Bsp1286I	GDGCHC	4 cut(s)	201, 251, 321, 347
Bsp143I	GATC	3 cut(s)	22, 112, 266
BspACI	CCGC	4 cut(s)	94, 240, 355, 414
BspANI	GGCC	2 cut(s)	150, 325
BspCNI	CTCAG	1 cut(s)	439
BspFNI	CGCG	1 cut(s)	454
BspLI	GGNNCC	3 cut(s)	162, 200, 320
BspMI	ACCTGC	1 cut(s)	349
BsrFI	RCCGGY	1 cut(s)	304
BssAI	RCCGGY	1 cut(s)	304
BssECI	CCNNGG	3 cut(s)	164, 187, 340
BssMI	GATC	3 cut(s)	22, 112, 266
Bst2UI	CCWGG	1 cut(s)	188
Bst4CI	ACNGT	2 cut(s)	107, 330
Bst6I	CTCTTC	1 cut(s)	432
BstDEI	CTNAG	1 cut(s)	447
BstFNI	CGCG	1 cut(s)	454
BstHHI	GCGC	2 cut(s)	284, 454
BstKTI	GATC	3 cut(s)	25, 115, 269
BstMAI	GTCTC	1 cut(s)	336
BstMBI	GATC	3 cut(s)	22, 112, 266
BstMCI	CGRYCG	1 cut(s)	115
BstMWI	GCNNNNNNNGC	1 cut(s)	342
BstNI	CCWGG	1 cut(s)	188
BstSCI	CCNGG	3 cut(s)	142, 186, 339
BstUI	CGCG	1 cut(s)	454
BstX2I	RGATCY	1 cut(s)	266
BstYI	RGATCY	1 cut(s)	266
BsuRI	GGCC	2 cut(s)	150, 325
BveI	ACCTGC	1 cut(s)	349
CfoI	GCGC	2 cut(s)	284, 454
Cfr10I	RCCGGY	1 cut(s)	304
Cfr13I	GGNCC	1 cut(s)	161
CviAII	CATG	2 cut(s)	73, 223
DdeI	CTNAG	1 cut(s)	447
DpnI	GATC	3 cut(s)	24, 114, 268
DpnII	GATC	3 cut(s)	22, 112, 266
EaeI	YGGCCR	2 cut(s)	148, 323
Eam1104I	CTCTTC	1 cut(s)	432
EarI	CTCTTC	1 cut(s)	432
Eco24I	GRGCYC	4 cut(s)	201, 251, 321, 347
Eco47I	GGWCC	1 cut(s)	161
Eco57I	CTGAAG	1 cut(s)	152
Eco88I	CYCGRG	1 cut(s)	277
EcoO109I	RGGNCCY	1 cut(s)	161
EcoRII	CCWGG	1 cut(s)	186
EcoT38I	GRGCYC	4 cut(s)	201, 251, 321, 347
Esp3I	CGTCTC	1 cut(s)	336
FaeI	CATG	2 cut(s)	76, 226
FaiI	YATR	3 cut(s)	74, 224, 353
FatI	CATG	2 cut(s)	72, 222
FauI	CCCGC	1 cut(s)	101
FbaI	TGATCA	1 cut(s)	22
Fnu4HI	GCNGC	1 cut(s)	356
FriOI	GRGCYC	4 cut(s)	201, 251, 321, 347
Fsp4HI	GCNGC	1 cut(s)	356
FspBI	CTAG	3 cut(s)	252, 264, 479
GlaI	GCGC	2 cut(s)	283, 453
GluI	GCNGC	1 cut(s)	356
HaeIII	GGCC	2 cut(s)	150, 325
HapII	CCGG	5 cut(s)	143, 151, 305, 322, 340
HhaI	GCGC	2 cut(s)	284, 454
Hin1II	CATG	2 cut(s)	76, 226
Hin6I	GCGC	2 cut(s)	282, 452
HinP1I	GCGC	2 cut(s)	282, 452
HinfI	GANTC	5 cut(s)	89, 139, 178, 273, 482
HpaII	CCGG	5 cut(s)	143, 151, 305, 322, 340
HphI	GGTGA	1 cut(s)	34
Hpy188I	TCNGA	8 cut(s)	22, 88, 112, 120, 168, 349, 381, 448
Hpy188III	TCNNGA	4 cut(s)	35, 270, 277, 486
Hpy99I	CGWCG	1 cut(s)	120
HpyAV	CCTTC	1 cut(s)	420
HpyCH4III	ACNGT	2 cut(s)	107, 330
HpyCH4IV	ACGT	1 cut(s)	236
HpyCH4V	TGCA	2 cut(s)	302, 399
HpyF10VI	GCNNNNNNNGC	1 cut(s)	342
HpyF3I	CTNAG	1 cut(s)	447
HpySE526I	ACGT	1 cut(s)	236
Hsp92II	CATG	2 cut(s)	76, 226
HspAI	GCGC	2 cut(s)	282, 452
Ksp22I	TGATCA	1 cut(s)	22
Kzo9I	GATC	3 cut(s)	22, 112, 266
LmnI	GCTCC	2 cut(s)	204, 324
MaeI	CTAG	3 cut(s)	252, 264, 479
MaeII	ACGT	1 cut(s)	236
MaeIII	GTNAC	1 cut(s)	361
MalI	GATC	3 cut(s)	24, 114, 268
MboI	GATC	3 cut(s)	22, 112, 266
MboII	GAAGA	2 cut(s)	418, 449
MflI	RGATCY	1 cut(s)	266
MhlI	GDGCHC	4 cut(s)	201, 251, 321, 347
MluCI	AATT	3 cut(s)	97, 170, 400
MlyI	GAGTC	1 cut(s)	172
MmeI	TCCRAC	2 cut(s)	98, 126
MseI	TTAA	2 cut(s)	405, 473
MspI	CCGG	5 cut(s)	143, 151, 305, 322, 340
MspR9I	CCNGG	3 cut(s)	144, 188, 341
MvaI	CCWGG	1 cut(s)	188
MvnI	CGCG	1 cut(s)	454
MwoI	GCNNNNNNNGC	1 cut(s)	342
NciI	CCSGG	2 cut(s)	144, 341
NdeII	GATC	3 cut(s)	22, 112, 266
NlaIII	CATG	2 cut(s)	76, 226
NlaIV	GGNNCC	3 cut(s)	162, 200, 320
PfeI	GAWTC	4 cut(s)	89, 139, 273, 482
PflMI	CCANNNNNTGG	1 cut(s)	193
PkrI	GCNGC	1 cut(s)	357
Ple19I	CGATCG	1 cut(s)	115
PleI	GAGTC	1 cut(s)	172
PpsI	GAGTC	1 cut(s)	172
PpuMI	RGGWCCY	1 cut(s)	161
Psp5II	RGGWCCY	1 cut(s)	161
Psp6I	CCWGG	1 cut(s)	186
PspGI	CCWGG	1 cut(s)	186
PspN4I	GGNNCC	3 cut(s)	162, 200, 320
PspPI	GGNCC	1 cut(s)	161
PspPPI	RGGWCCY	1 cut(s)	161
PsuI	RGATCY	1 cut(s)	266
PvuI	CGATCG	1 cut(s)	115
SaqAI	TTAA	2 cut(s)	405, 473
SatI	GCNGC	1 cut(s)	356
Sau3AI	GATC	3 cut(s)	22, 112, 266
Sau96I	GGNCC	1 cut(s)	161
SchI	GAGTC	1 cut(s)	172
ScrFI	CCNGG	3 cut(s)	144, 188, 341
SduI	GDGCHC	4 cut(s)	201, 251, 321, 347
SetI	ASST	7 cut(s)	42, 84, 132, 239, 289, 363, 444
SgrAI	CRCCGGYG	1 cut(s)	304
SinI	GGWCC	1 cut(s)	161
Sse9I	AATT	3 cut(s)	97, 170, 400
SsiI	CCGC	4 cut(s)	94, 240, 355, 414
SspMI	CTAG	3 cut(s)	252, 264, 479
StyD4I	CCNGG	3 cut(s)	142, 186, 339
TaaI	ACNGT	2 cut(s)	107, 330
TaiI	ACGT	1 cut(s)	239
TaqI	TCGA	1 cut(s)	36
TasI	AATT	3 cut(s)	97, 170, 400
TauI	GCSGC	1 cut(s)	358
TfiI	GAWTC	4 cut(s)	89, 139, 273, 482
Tru1I	TTAA	2 cut(s)	405, 473
Tru9I	TTAA	2 cut(s)	405, 473
TspDTI	ATGAA	1 cut(s)	211
Van91I	CCANNNNNTGG	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	161
XcmI	CCANNNNNNNNNTGG	1 cut(s)	70
XspI	CTAG	3 cut(s)	252, 264, 479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.