RchiOBHm_Chr7g0219121

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0008139
Physical Location & Seq
Forward (+)
37360184 .. 37361879
1696 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ19612

Sequence Viewer

Length: 306 bp
ATGGCAAAGCTCTCTGATTCCCGCAATTCCAACCGTTCCGATCGCCGGAACAAATACCTGAAGCCGAATCTGGGTGGCCGGAAATTGGGTCCTCGGAAATTGGCGACGCTATTCCAGGGTTTGGGGCTCCAAGACAAAACCCCTTCTTCTTTCATGTTATCGCCTATGTCAGCAAAGAGTCCAAGCCCTAACCCTAGATCTGGAATCCCGAGCGCACCTCCTACTCCCAATGCACCGGCGAGGCATGGTCTCCGGCCACCATCTCGCCTCCGTGGCTCGGATATGCGGCAGGCTTTTCGCCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.09

Weight (kDa)

12.0

Isoelectric Point (pI)

82.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 121
AciI CCGC 2 cut(s) 22, 286
AcoI YGGCCR 2 cut(s) 76, 254
AcuI CTGAAG 1 cut(s) 80
AfiI CCNNNNNNNGG 6 cut(s) 45, 71, 85, 121, 200, 277
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 1 cut(s) 10
AluI AGCT 1 cut(s) 10
Alw26I GTCTC 1 cut(s) 254
Ama87I CYCGRG 1 cut(s) 208
AoxI GGCC 2 cut(s) 76, 254
AspLEI GCGC 1 cut(s) 215
AspS9I GGNCC 1 cut(s) 89
AvaI CYCGRG 1 cut(s) 208
AvaII GGWCC 1 cut(s) 89
BanII GRGCYC 1 cut(s) 129
BccI CCATC 1 cut(s) 268
BcgI CGANNNNNNTGC 1 cut(s) 278
BciT130I CCWGG 1 cut(s) 116
BcoDI GTCTC 1 cut(s) 254
BfaI CTAG 1 cut(s) 195
BglI GCCNNNNNGGC 1 cut(s) 273
BglII AGATCT 1 cut(s) 197
BisI GCNGC 1 cut(s) 287
BlsI GCNGC 1 cut(s) 288
Bme1390I CCNGG 1 cut(s) 116
Bme18I GGWCC 1 cut(s) 89
BmeT110I CYCGRG 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 89
BmiI GGNNCC 2 cut(s) 90, 128
BmrFI CCNGG 1 cut(s) 116
BplI GAGNNNNNCTC 2 cut(s) 202, 234
BsaI GGTCTC 1 cut(s) 254
BsaJI CCNNGG 3 cut(s) 92, 115, 271
Bsc4I CCNNNNNNNGG 6 cut(s) 45, 71, 85, 121, 200, 277
Bse118I RCCGGY 1 cut(s) 235
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 3 cut(s) 92, 115, 271
BseLI CCNNNNNNNGG 6 cut(s) 45, 71, 85, 121, 200, 277
Bsh1285I CGRYCG 1 cut(s) 43
BshFI GGCC 2 cut(s) 78, 256
BsiEI CGRYCG 1 cut(s) 43
BsiHKCI CYCGRG 1 cut(s) 208
BsiSI CCGG 4 cut(s) 46, 79, 236, 253
BslI CCNNNNNNNGG 6 cut(s) 45, 71, 85, 121, 200, 277
BsmAI GTCTC 1 cut(s) 254
BsnI GGCC 2 cut(s) 78, 256
Bso31I GGTCTC 1 cut(s) 254
BsoBI CYCGRG 1 cut(s) 208
Bsp1286I GDGCHC 1 cut(s) 129
Bsp143I GATC 2 cut(s) 40, 197
BspACI CCGC 2 cut(s) 22, 286
BspANI GGCC 2 cut(s) 78, 256
BspLI GGNNCC 2 cut(s) 90, 128
BspTNI GGTCTC 1 cut(s) 254
BsrFI RCCGGY 1 cut(s) 235
BssAI RCCGGY 1 cut(s) 235
BssECI CCNNGG 3 cut(s) 92, 115, 271
BssMI GATC 2 cut(s) 40, 197
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 291
BstDSI CCRYGG 1 cut(s) 271
BstHHI GCGC 1 cut(s) 215
BstKTI GATC 2 cut(s) 43, 200
BstMAI GTCTC 1 cut(s) 254
BstMBI GATC 2 cut(s) 40, 197
BstMCI CGRYCG 1 cut(s) 43
BstMWI GCNNNNNNNGC 1 cut(s) 273
BstNI CCWGG 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 114
BstX2I RGATCY 1 cut(s) 197
BstYI RGATCY 1 cut(s) 197
BsuRI GGCC 2 cut(s) 78, 256
BtgI CCRYGG 1 cut(s) 271
Cac8I GCNNGC 1 cut(s) 291
CfoI GCGC 1 cut(s) 215
Cfr10I RCCGGY 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 89
CseI GACGC 1 cut(s) 115
CviAII CATG 2 cut(s) 154, 245
CviJI RGCY 8 cut(s) 10, 64, 78, 127, 186, 256, 276, 293
CviKI_1 RGCY 8 cut(s) 10, 64, 78, 127, 186, 256, 276, 293
DpnI GATC 2 cut(s) 42, 199
DpnII GATC 2 cut(s) 40, 197
EaeI YGGCCR 2 cut(s) 76, 254
Eco24I GRGCYC 1 cut(s) 129
Eco31I GGTCTC 1 cut(s) 254
Eco47I GGWCC 1 cut(s) 89
Eco57I CTGAAG 1 cut(s) 80
Eco88I CYCGRG 1 cut(s) 208
EcoO109I RGGNCCY 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 114
EcoT38I GRGCYC 1 cut(s) 129
FaeI CATG 2 cut(s) 157, 248
FaiI YATR 4 cut(s) 155, 167, 246, 284
FatI CATG 2 cut(s) 153, 244
FauI CCCGC 1 cut(s) 29
Fnu4HI GCNGC 1 cut(s) 287
FriOI GRGCYC 1 cut(s) 129
Fsp4HI GCNGC 1 cut(s) 287
FspBI CTAG 1 cut(s) 195
GlaI GCGC 1 cut(s) 214
GluI GCNGC 1 cut(s) 287
HaeIII GGCC 2 cut(s) 78, 256
HapII CCGG 4 cut(s) 46, 79, 236, 253
HgaI GACGC 1 cut(s) 115
HhaI GCGC 1 cut(s) 215
Hin1II CATG 2 cut(s) 157, 248
Hin6I GCGC 1 cut(s) 213
HinP1I GCGC 1 cut(s) 213
HinfI GANTC 4 cut(s) 17, 67, 178, 204
HpaII CCGG 4 cut(s) 46, 79, 236, 253
Hpy188I TCNGA 4 cut(s) 16, 40, 96, 280
Hpy188III TCNNGA 2 cut(s) 201, 208
Hpy99I CGWCG 1 cut(s) 109
HpyAV CCTTC 1 cut(s) 153
HpyCH4III ACNGT 1 cut(s) 35
HpyCH4V TGCA 1 cut(s) 233
HpyF10VI GCNNNNNNNGC 1 cut(s) 273
Hsp92II CATG 2 cut(s) 157, 248
HspAI GCGC 1 cut(s) 213
Kzo9I GATC 2 cut(s) 40, 197
LmnI GCTCC 1 cut(s) 132
MaeI CTAG 1 cut(s) 195
MalI GATC 2 cut(s) 42, 199
MboI GATC 2 cut(s) 40, 197
MboII GAAGA 1 cut(s) 138
MflI RGATCY 1 cut(s) 197
MhlI GDGCHC 1 cut(s) 129
MluCI AATT 3 cut(s) 25, 83, 98
MlyI GAGTC 1 cut(s) 187
MmeI TCCRAC 1 cut(s) 54
MnlI CCTC 4 cut(s) 102, 228, 234, 278
MspI CCGG 4 cut(s) 46, 79, 236, 253
MspR9I CCNGG 1 cut(s) 116
MvaI CCWGG 1 cut(s) 116
MwoI GCNNNNNNNGC 1 cut(s) 273
NdeII GATC 2 cut(s) 40, 197
NlaIII CATG 2 cut(s) 157, 248
NlaIV GGNNCC 2 cut(s) 90, 128
PfeI GAWTC 3 cut(s) 17, 67, 204
PflMI CCANNNNNTGG 1 cut(s) 121
PkrI GCNGC 1 cut(s) 288
Ple19I CGATCG 1 cut(s) 43
PleI GAGTC 1 cut(s) 186
PpsI GAGTC 1 cut(s) 186
PpuMI RGGWCCY 1 cut(s) 89
Psp5II RGGWCCY 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 2 cut(s) 90, 128
PspPI GGNCC 1 cut(s) 89
PspPPI RGGWCCY 1 cut(s) 89
PsuI RGATCY 1 cut(s) 197
PvuI CGATCG 1 cut(s) 43
SatI GCNGC 1 cut(s) 287
Sau3AI GATC 2 cut(s) 40, 197
Sau96I GGNCC 1 cut(s) 89
SchI GAGTC 1 cut(s) 187
ScrFI CCNGG 1 cut(s) 116
SduI GDGCHC 1 cut(s) 129
SetI ASST 3 cut(s) 12, 60, 220
SgrAI CRCCGGYG 1 cut(s) 235
SinI GGWCC 1 cut(s) 89
Sse9I AATT 3 cut(s) 25, 83, 98
SsiI CCGC 2 cut(s) 22, 286
SspMI CTAG 1 cut(s) 195
StyD4I CCNGG 1 cut(s) 114
TaaI ACNGT 1 cut(s) 35
TasI AATT 3 cut(s) 25, 83, 98
TauI GCSGC 1 cut(s) 289
TfiI GAWTC 3 cut(s) 17, 67, 204
TspDTI ATGAA 1 cut(s) 142
TspGWI ACGGA 1 cut(s) 260
Van91I CCANNNNNTGG 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 89
XspI CTAG 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.