Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0008139

Physical Location & Seq

Genomic Coordinates Forward (+)

27869752 .. 27870534

Gene Structure 783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG267700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGCAAAGCTCTCTGATTCCCGCAATTCCAACCGTTCCGATCGTCGGAACAAATACCTGAAGCCGAATCCGGGTGGCCGGAAATCGGGTCCTCGGAAATTGGCGACTCTATTCCAGGGTTTGGGGCTCCAAGACAAAACCCCTCCTTTCATGTTGTCGCCTACGTCCGCAAAGAGCCCTAGCCCTAACCCTAGATCTGGAATCCCGAGCGCACCTCCTACTCCCAATGCACCGGCGAGGCACGGGCTCCGGCCACCGTCTCGCCTCCGGGGCTCGGATATGCGGCAGGCTTTTCGCCGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

100

Amino Acids

10.94

Weight (kDa)

12.0

Isoelectric Point (pI)

79.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008139)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23480 FvH4_5g23480 FvH4_5g23480 FvH4_5g23480 FvH4_5g23480 FvH4_5g23480
rosa_chinensis	RchiOBHm_Chr7g0212721 RchiOBHm_Chr7g0212751 RchiOBHm_Chr7g0219121
rosa_laevigata	RLG00000002874
rosa_roxburghii	Rroxscaffold_3G00240340 Rroxscaffold_3G00240370 Rroxscaffold_3G00240490 Rroxscaffold_3G00246600 Rroxscaffold_7G00194690
rosa_rugosa	Rorug07G0136200
rosa_samantha	Rh7AG267700 Rh7BG258600 Rh7BG258800 Rh7BG263300 Rh7CG286800 Rh7CG291500 Rh7DG275800 Rh7DG276000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	121
AciI	CCGC	3 cut(s)	22, 168, 283
AcoI	YGGCCR	2 cut(s)	76, 251
AcuI	CTGAAG	1 cut(s)	80
AfiI	CCNNNNNNNGG	6 cut(s)	45, 71, 85, 121, 197, 274
AjnI	CCWGG	1 cut(s)	114
AluBI	AGCT	1 cut(s)	10
AluI	AGCT	1 cut(s)	10
Alw26I	GTCTC	1 cut(s)	264
Ama87I	CYCGRG	1 cut(s)	205
AoxI	GGCC	2 cut(s)	76, 251
AspLEI	GCGC	1 cut(s)	212
AspS9I	GGNCC	1 cut(s)	89
AsuC2I	CCSGG	2 cut(s)	72, 269
AvaI	CYCGRG	1 cut(s)	205
AvaII	GGWCC	1 cut(s)	89
BanII	GRGCYC	4 cut(s)	129, 179, 249, 275
BcgI	CGANNNNNNTGC	1 cut(s)	275
BciT130I	CCWGG	1 cut(s)	116
BcnI	CCSGG	2 cut(s)	72, 269
BcoDI	GTCTC	1 cut(s)	264
BfaI	CTAG	2 cut(s)	180, 192
BglI	GCCNNNNNGGC	1 cut(s)	270
BglII	AGATCT	1 cut(s)	194
BisI	GCNGC	1 cut(s)	284
BlsI	GCNGC	1 cut(s)	285
Bme1390I	CCNGG	3 cut(s)	72, 116, 269
Bme18I	GGWCC	1 cut(s)	89
BmeT110I	CYCGRG	1 cut(s)	205
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	3 cut(s)	90, 128, 248
BmrFI	CCNGG	3 cut(s)	72, 116, 269
BplI	GAGNNNNNCTC	2 cut(s)	199, 231
BpuMI	CCSGG	2 cut(s)	72, 269
BsaJI	CCNNGG	3 cut(s)	92, 115, 268
Bsc4I	CCNNNNNNNGG	6 cut(s)	45, 71, 85, 121, 197, 274
Bse118I	RCCGGY	1 cut(s)	232
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	3 cut(s)	92, 115, 268
BseLI	CCNNNNNNNGG	6 cut(s)	45, 71, 85, 121, 197, 274
Bsh1285I	CGRYCG	1 cut(s)	43
BshFI	GGCC	2 cut(s)	78, 253
BsiEI	CGRYCG	1 cut(s)	43
BsiHKCI	CYCGRG	1 cut(s)	205
BsiSI	CCGG	5 cut(s)	71, 79, 233, 250, 268
BslI	CCNNNNNNNGG	6 cut(s)	45, 71, 85, 121, 197, 274
BsmAI	GTCTC	1 cut(s)	264
BsmBI	CGTCTC	1 cut(s)	264
BsnI	GGCC	2 cut(s)	78, 253
BsoBI	CYCGRG	1 cut(s)	205
Bsp1286I	GDGCHC	4 cut(s)	129, 179, 249, 275
Bsp143I	GATC	2 cut(s)	40, 194
BspACI	CCGC	3 cut(s)	22, 168, 283
BspANI	GGCC	2 cut(s)	78, 253
BspLI	GGNNCC	3 cut(s)	90, 128, 248
BsrFI	RCCGGY	1 cut(s)	232
BssAI	RCCGGY	1 cut(s)	232
BssECI	CCNNGG	3 cut(s)	92, 115, 268
BssMI	GATC	2 cut(s)	40, 194
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	2 cut(s)	35, 258
BstC8I	GCNNGC	1 cut(s)	288
BstHHI	GCGC	1 cut(s)	212
BstKTI	GATC	2 cut(s)	43, 197
BstMAI	GTCTC	1 cut(s)	264
BstMBI	GATC	2 cut(s)	40, 194
BstMCI	CGRYCG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	1 cut(s)	270
BstNI	CCWGG	1 cut(s)	116
BstSCI	CCNGG	3 cut(s)	70, 114, 267
BstX2I	RGATCY	1 cut(s)	194
BstYI	RGATCY	1 cut(s)	194
BsuRI	GGCC	2 cut(s)	78, 253
Cac8I	GCNNGC	1 cut(s)	288
CfoI	GCGC	1 cut(s)	212
Cfr10I	RCCGGY	1 cut(s)	232
Cfr13I	GGNCC	1 cut(s)	89
CviAII	CATG	1 cut(s)	151
DpnI	GATC	2 cut(s)	42, 196
DpnII	GATC	2 cut(s)	40, 194
EaeI	YGGCCR	2 cut(s)	76, 251
Eco24I	GRGCYC	4 cut(s)	129, 179, 249, 275
Eco47I	GGWCC	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	80
Eco88I	CYCGRG	1 cut(s)	205
EcoO109I	RGGNCCY	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	114
EcoT38I	GRGCYC	4 cut(s)	129, 179, 249, 275
Esp3I	CGTCTC	1 cut(s)	264
FaeI	CATG	1 cut(s)	154
FaiI	YATR	2 cut(s)	152, 281
FatI	CATG	1 cut(s)	150
FauI	CCCGC	1 cut(s)	29
Fnu4HI	GCNGC	1 cut(s)	284
FriOI	GRGCYC	4 cut(s)	129, 179, 249, 275
Fsp4HI	GCNGC	1 cut(s)	284
FspBI	CTAG	2 cut(s)	180, 192
GlaI	GCGC	1 cut(s)	211
GluI	GCNGC	1 cut(s)	284
HaeIII	GGCC	2 cut(s)	78, 253
HapII	CCGG	5 cut(s)	71, 79, 233, 250, 268
HhaI	GCGC	1 cut(s)	212
Hin1II	CATG	1 cut(s)	154
Hin6I	GCGC	1 cut(s)	210
HinP1I	GCGC	1 cut(s)	210
HinfI	GANTC	4 cut(s)	17, 67, 106, 201
HpaII	CCGG	5 cut(s)	71, 79, 233, 250, 268
Hpy188I	TCNGA	5 cut(s)	16, 40, 48, 96, 277
Hpy188III	TCNNGA	2 cut(s)	198, 205
Hpy99I	CGWCG	1 cut(s)	48
HpyCH4III	ACNGT	2 cut(s)	35, 258
HpyCH4IV	ACGT	1 cut(s)	164
HpyCH4V	TGCA	1 cut(s)	230
HpyF10VI	GCNNNNNNNGC	1 cut(s)	270
HpySE526I	ACGT	1 cut(s)	164
Hsp92II	CATG	1 cut(s)	154
HspAI	GCGC	1 cut(s)	210
Kzo9I	GATC	2 cut(s)	40, 194
LmnI	GCTCC	2 cut(s)	132, 252
MaeI	CTAG	2 cut(s)	180, 192
MaeII	ACGT	1 cut(s)	164
MalI	GATC	2 cut(s)	42, 196
MboI	GATC	2 cut(s)	40, 194
MflI	RGATCY	1 cut(s)	194
MhlI	GDGCHC	4 cut(s)	129, 179, 249, 275
MluCI	AATT	2 cut(s)	25, 98
MlyI	GAGTC	1 cut(s)	100
MmeI	TCCRAC	2 cut(s)	26, 54
MnlI	CCTC	5 cut(s)	102, 153, 225, 231, 275
MspI	CCGG	5 cut(s)	71, 79, 233, 250, 268
MspR9I	CCNGG	3 cut(s)	72, 116, 269
MvaI	CCWGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	1 cut(s)	270
NciI	CCSGG	2 cut(s)	72, 269
NdeII	GATC	2 cut(s)	40, 194
NlaIII	CATG	1 cut(s)	154
NlaIV	GGNNCC	3 cut(s)	90, 128, 248
PfeI	GAWTC	3 cut(s)	17, 67, 201
PflMI	CCANNNNNTGG	1 cut(s)	121
PkrI	GCNGC	1 cut(s)	285
Ple19I	CGATCG	1 cut(s)	43
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PpuMI	RGGWCCY	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	89
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	3 cut(s)	90, 128, 248
PspPI	GGNCC	1 cut(s)	89
PspPPI	RGGWCCY	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	194
PvuI	CGATCG	1 cut(s)	43
SatI	GCNGC	1 cut(s)	284
Sau3AI	GATC	2 cut(s)	40, 194
Sau96I	GGNCC	1 cut(s)	89
SchI	GAGTC	1 cut(s)	100
ScrFI	CCNGG	3 cut(s)	72, 116, 269
SduI	GDGCHC	4 cut(s)	129, 179, 249, 275
SetI	ASST	4 cut(s)	12, 60, 167, 217
SgrAI	CRCCGGYG	1 cut(s)	232
SinI	GGWCC	1 cut(s)	89
Sse9I	AATT	2 cut(s)	25, 98
SsiI	CCGC	3 cut(s)	22, 168, 283
SspMI	CTAG	2 cut(s)	180, 192
StyD4I	CCNGG	3 cut(s)	70, 114, 267
TaaI	ACNGT	2 cut(s)	35, 258
TaiI	ACGT	1 cut(s)	167
TasI	AATT	2 cut(s)	25, 98
TauI	GCSGC	1 cut(s)	286
TfiI	GAWTC	3 cut(s)	17, 67, 201
TspDTI	ATGAA	1 cut(s)	139
Van91I	CCANNNNNTGG	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	89
XspI	CTAG	2 cut(s)	180, 192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.