RLG00000002874

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0008139
Physical Location & Seq
Reverse (-)
40987268 .. 40987745
478 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000002874

Sequence Viewer

Length: 399 bp
ATGGCAAAGCTCTCTGATTCCCGCAATTCCAACCGTTCCGATCGCTGGAAAAAATACCTGAAGCCGAATCTGGGTGGCCGGAAATCGGGTCCTCGGAAATTGGTGACTCTATTCCAGGGTTTGGGGCTCCAAGATAAAGCCCCTTCTTCTTTCATGTTGTCGCCTACGTCGGCAAAGAGCCCTAGCCCTAACCCTAGATCTCGAATCCCGAGCGCACCTCCTACTCCCAATGCACCAGCGAGGCACGGTCTCGGGCCACCGTCTCGCTTCCGGGGCTCGGATATGCAGCAGAAAGATATCTCCGGTAGAGAGAGGGAGGGGAGAGAGAGAAAGAAGAAGAAGTCAAAGTCAGCGCCGGCAGAGAGAGAAGAAGTCGCCGATAGAGAAAGGGAGGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

133

Amino Acids

14.63

Weight (kDa)

11.13

Isoelectric Point (pI)

58.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 121
AciI CCGC 1 cut(s) 22
AcoI YGGCCR 1 cut(s) 76
AcuI CTGAAG 1 cut(s) 80
AfiI CCNNNNNNNGG 5 cut(s) 45, 71, 85, 121, 277
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 1 cut(s) 10
AluI AGCT 1 cut(s) 10
Alw26I GTCTC 2 cut(s) 254, 267
Ama87I CYCGRG 2 cut(s) 208, 251
AoxI GGCC 2 cut(s) 76, 254
ApeKI GCWGC 1 cut(s) 286
AspLEI GCGC 2 cut(s) 215, 355
AspS9I GGNCC 2 cut(s) 89, 254
AsuC2I CCSGG 1 cut(s) 272
AsuHPI GGTGA 1 cut(s) 115
AvaI CYCGRG 2 cut(s) 208, 251
AvaII GGWCC 1 cut(s) 89
BanII GRGCYC 3 cut(s) 129, 182, 278
BbvI GCAGC 1 cut(s) 298
BciT130I CCWGG 1 cut(s) 116
BcnI CCSGG 1 cut(s) 272
BcoDI GTCTC 2 cut(s) 254, 267
BfaI CTAG 2 cut(s) 183, 195
BfoI RGCGCY 1 cut(s) 356
BglII AGATCT 1 cut(s) 197
BisI GCNGC 1 cut(s) 287
BlsI GCNGC 1 cut(s) 288
Bme1390I CCNGG 2 cut(s) 116, 272
Bme18I GGWCC 1 cut(s) 89
BmeT110I CYCGRG 2 cut(s) 208, 251
BmgT120I GGNCC 2 cut(s) 89, 254
BmiI GGNNCC 2 cut(s) 90, 128
BmrFI CCNGG 2 cut(s) 116, 272
BplI GAGNNNNNCTC 2 cut(s) 202, 234
BpuMI CCSGG 1 cut(s) 272
BsaI GGTCTC 1 cut(s) 254
BsaJI CCNNGG 3 cut(s) 92, 115, 271
BsaWI WCCGGW 1 cut(s) 302
Bsc4I CCNNNNNNNGG 5 cut(s) 45, 71, 85, 121, 277
Bse118I RCCGGY 1 cut(s) 355
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 3 cut(s) 92, 115, 271
BseLI CCNNNNNNNGG 5 cut(s) 45, 71, 85, 121, 277
BseXI GCAGC 1 cut(s) 298
Bsh1285I CGRYCG 1 cut(s) 43
BshFI GGCC 2 cut(s) 78, 256
BsiEI CGRYCG 1 cut(s) 43
BsiHKCI CYCGRG 2 cut(s) 208, 251
BsiSI CCGG 4 cut(s) 79, 271, 303, 356
BslI CCNNNNNNNGG 5 cut(s) 45, 71, 85, 121, 277
BsmAI GTCTC 2 cut(s) 254, 267
BsmBI CGTCTC 1 cut(s) 267
BsnI GGCC 2 cut(s) 78, 256
Bso31I GGTCTC 1 cut(s) 254
BsoBI CYCGRG 2 cut(s) 208, 251
Bsp1286I GDGCHC 3 cut(s) 129, 182, 278
Bsp143I GATC 2 cut(s) 40, 197
BspACI CCGC 1 cut(s) 22
BspANI GGCC 2 cut(s) 78, 256
BspLI GGNNCC 2 cut(s) 90, 128
BspTNI GGTCTC 1 cut(s) 254
BsrFI RCCGGY 1 cut(s) 355
BssAI RCCGGY 1 cut(s) 355
BssECI CCNNGG 3 cut(s) 92, 115, 271
BssMI GATC 2 cut(s) 40, 197
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 3 cut(s) 35, 248, 261
BstC8I GCNNGC 1 cut(s) 357
BstH2I RGCGCY 1 cut(s) 356
BstHHI GCGC 2 cut(s) 215, 355
BstKTI GATC 2 cut(s) 43, 200
BstMAI GTCTC 2 cut(s) 254, 267
BstMBI GATC 2 cut(s) 40, 197
BstMCI CGRYCG 1 cut(s) 43
BstMWI GCNNNNNNNGC 1 cut(s) 273
BstNI CCWGG 1 cut(s) 116
BstSCI CCNGG 2 cut(s) 114, 270
BstV1I GCAGC 1 cut(s) 298
BstX2I RGATCY 1 cut(s) 197
BstYI RGATCY 1 cut(s) 197
BsuRI GGCC 2 cut(s) 78, 256
Cac8I GCNNGC 1 cut(s) 357
CfoI GCGC 2 cut(s) 215, 355
Cfr10I RCCGGY 1 cut(s) 355
Cfr13I GGNCC 2 cut(s) 89, 254
CviAII CATG 1 cut(s) 154
CviJI RGCY 9 cut(s) 10, 64, 78, 127, 140, 180, 186, 256, 276
CviKI_1 RGCY 9 cut(s) 10, 64, 78, 127, 140, 180, 186, 256, 276
DpnI GATC 2 cut(s) 42, 199
DpnII GATC 2 cut(s) 40, 197
EaeI YGGCCR 1 cut(s) 76
Eco24I GRGCYC 3 cut(s) 129, 182, 278
Eco31I GGTCTC 1 cut(s) 254
Eco32I GATATC 1 cut(s) 298
Eco47I GGWCC 1 cut(s) 89
Eco57I CTGAAG 1 cut(s) 80
Eco88I CYCGRG 2 cut(s) 208, 251
EcoO109I RGGNCCY 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 114
EcoRV GATATC 1 cut(s) 298
EcoT38I GRGCYC 3 cut(s) 129, 182, 278
Esp3I CGTCTC 1 cut(s) 267
FaeI CATG 1 cut(s) 157
FaiI YATR 2 cut(s) 155, 284
FatI CATG 1 cut(s) 153
FauI CCCGC 1 cut(s) 29
Fnu4HI GCNGC 1 cut(s) 287
FriOI GRGCYC 3 cut(s) 129, 182, 278
Fsp4HI GCNGC 1 cut(s) 287
FspBI CTAG 2 cut(s) 183, 195
GlaI GCGC 2 cut(s) 214, 354
GluI GCNGC 1 cut(s) 287
HaeII RGCGCY 1 cut(s) 356
HaeIII GGCC 2 cut(s) 78, 256
HapII CCGG 4 cut(s) 79, 271, 303, 356
HhaI GCGC 2 cut(s) 215, 355
Hin1II CATG 1 cut(s) 157
Hin6I GCGC 2 cut(s) 213, 353
HinP1I GCGC 2 cut(s) 213, 353
HinfI GANTC 4 cut(s) 17, 67, 106, 204
HpaII CCGG 4 cut(s) 79, 271, 303, 356
HphI GGTGA 1 cut(s) 115
Hpy188I TCNGA 4 cut(s) 16, 40, 96, 280
Hpy188III TCNNGA 2 cut(s) 201, 208
Hpy99I CGWCG 1 cut(s) 172
HpyAV CCTTC 1 cut(s) 153
HpyCH4III ACNGT 3 cut(s) 35, 248, 261
HpyCH4IV ACGT 1 cut(s) 167
HpyCH4V TGCA 2 cut(s) 233, 286
HpyF10VI GCNNNNNNNGC 1 cut(s) 273
HpySE526I ACGT 1 cut(s) 167
Hsp92II CATG 1 cut(s) 157
HspAI GCGC 2 cut(s) 213, 353
KroI GCCGGC 1 cut(s) 355
KroNI GCCGGC 1 cut(s) 357
Kzo9I GATC 2 cut(s) 40, 197
LmnI GCTCC 1 cut(s) 132
Lsp1109I GCAGC 1 cut(s) 298
MaeI CTAG 2 cut(s) 183, 195
MaeII ACGT 1 cut(s) 167
MaeIII GTNAC 1 cut(s) 103
MalI GATC 2 cut(s) 42, 199
MboI GATC 2 cut(s) 40, 197
MboII GAAGA 4 cut(s) 138, 346, 349, 380
MflI RGATCY 1 cut(s) 197
MhlI GDGCHC 3 cut(s) 129, 182, 278
MluCI AATT 2 cut(s) 25, 98
MlyI GAGTC 1 cut(s) 100
MmeI TCCRAC 1 cut(s) 54
MnlI CCTC 6 cut(s) 102, 228, 234, 306, 310, 385
MroNI GCCGGC 1 cut(s) 355
MspI CCGG 4 cut(s) 79, 271, 303, 356
MspR9I CCNGG 2 cut(s) 116, 272
MvaI CCWGG 1 cut(s) 116
MwoI GCNNNNNNNGC 1 cut(s) 273
NaeI GCCGGC 1 cut(s) 357
NciI CCSGG 1 cut(s) 272
NdeII GATC 2 cut(s) 40, 197
NgoMIV GCCGGC 1 cut(s) 355
NlaIII CATG 1 cut(s) 157
NlaIV GGNNCC 2 cut(s) 90, 128
NmuCI GTSAC 1 cut(s) 103
PdiI GCCGGC 1 cut(s) 357
PfeI GAWTC 3 cut(s) 17, 67, 204
PflMI CCANNNNNTGG 1 cut(s) 121
PkrI GCNGC 1 cut(s) 288
Ple19I CGATCG 1 cut(s) 43
PleI GAGTC 1 cut(s) 100
PpsI GAGTC 1 cut(s) 100
PpuMI RGGWCCY 1 cut(s) 89
Psp5II RGGWCCY 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 2 cut(s) 90, 128
PspPI GGNCC 2 cut(s) 89, 254
PspPPI RGGWCCY 1 cut(s) 89
PsuI RGATCY 1 cut(s) 197
PvuI CGATCG 1 cut(s) 43
SatI GCNGC 1 cut(s) 287
Sau3AI GATC 2 cut(s) 40, 197
Sau96I GGNCC 2 cut(s) 89, 254
SchI GAGTC 1 cut(s) 100
ScrFI CCNGG 2 cut(s) 116, 272
SduI GDGCHC 3 cut(s) 129, 182, 278
SetI ASST 4 cut(s) 12, 60, 170, 220
SinI GGWCC 1 cut(s) 89
Sse9I AATT 2 cut(s) 25, 98
SsiI CCGC 1 cut(s) 22
SspMI CTAG 2 cut(s) 183, 195
StyD4I CCNGG 2 cut(s) 114, 270
TaaI ACNGT 3 cut(s) 35, 248, 261
TaiI ACGT 1 cut(s) 170
TaqI TCGA 1 cut(s) 202
TasI AATT 2 cut(s) 25, 98
TfiI GAWTC 3 cut(s) 17, 67, 204
TseFI GTSAC 1 cut(s) 103
TseI GCWGC 1 cut(s) 286
Tsp45I GTSAC 1 cut(s) 103
TspDTI ATGAA 1 cut(s) 142
Van91I CCANNNNNTGG 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 89
XspI CTAG 2 cut(s) 183, 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.