Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008139

Physical Location & Seq

Genomic Coordinates Forward (+)

29934688 .. 29936268

Gene Structure 1581 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19036

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGTTGTCGCCTACGTCCGCAAAGAGCCCTAGCCCTAACCCTAGATCTGGAATCCCGAGCGCACCTCCTACTCCCAATGCACCGGTGAGGCACGGTCTCCGGCCACCGTCTCGCCTCGGGGCTCGGATATGCGGCAGGCTTTTCGCCGATGAATGCAGAATGCACAAGCAGTGTGGCAACCGCCGCACTCTCTGTTGTGCTAGGTGTACTAGCTGCTATATATTGATTATCGTTTCAAAGGATGCAGGCATCCACGACAATTTGGGCTGCTCTCTCTATGACTGTGAGTTCTATTCCTCCTTTTCTATGATTTTTAATGGTTTCTTGCTCTTAAACTTGAAATCCATTAGTGTTCTGCATTTTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

122

Amino Acids

13.33

Weight (kDa)

9.28

Isoelectric Point (pI)

64.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008139)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23480 FvH4_5g23480 FvH4_5g23480 FvH4_5g23480 FvH4_5g23480 FvH4_5g23480
rosa_chinensis	RchiOBHm_Chr7g0212721 RchiOBHm_Chr7g0212751 RchiOBHm_Chr7g0219121
rosa_laevigata	RLG00000002874
rosa_roxburghii	Rroxscaffold_3G00240340 Rroxscaffold_3G00240370 Rroxscaffold_3G00240490 Rroxscaffold_3G00246600 Rroxscaffold_7G00194690
rosa_rugosa	Rorug07G0136200
rosa_samantha	Rh7AG267700 Rh7BG258600 Rh7BG258800 Rh7BG263300 Rh7CG286800 Rh7CG291500 Rh7DG275800 Rh7DG276000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	18, 132, 181, 184
AcoI	YGGCCR	1 cut(s)	101
AfaI	GTAC	1 cut(s)	208
AfiI	CCNNNNNNNGG	1 cut(s)	47
AgeI	ACCGGT	1 cut(s)	82
AgsI	TTSAA	2 cut(s)	237, 340
AluBI	AGCT	1 cut(s)	213
AluI	AGCT	1 cut(s)	213
Alw26I	GTCTC	2 cut(s)	101, 114
Ama87I	CYCGRG	2 cut(s)	55, 116
AoxI	GGCC	1 cut(s)	101
ApeKI	GCWGC	2 cut(s)	213, 267
AsiGI	ACCGGT	1 cut(s)	82
AspLEI	GCGC	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	97
AvaI	CYCGRG	2 cut(s)	55, 116
BanII	GRGCYC	2 cut(s)	29, 124
BbvI	GCAGC	2 cut(s)	200, 254
BcgI	CGANNNNNNTGC	2 cut(s)	124, 158
BcoDI	GTCTC	2 cut(s)	101, 114
BfaI	CTAG	4 cut(s)	30, 42, 201, 210
BglII	AGATCT	1 cut(s)	44
BisI	GCNGC	4 cut(s)	133, 184, 214, 268
BlsI	GCNGC	4 cut(s)	134, 185, 215, 269
BmeT110I	CYCGRG	2 cut(s)	55, 116
BmsI	GCATC	2 cut(s)	232, 258
BplI	GAGNNNNNCTC	2 cut(s)	49, 81
BsaI	GGTCTC	1 cut(s)	101
BsaJI	CCNNGG	1 cut(s)	115
BsaWI	WCCGGW	1 cut(s)	82
Bsc4I	CCNNNNNNNGG	1 cut(s)	47
Bse118I	RCCGGY	1 cut(s)	82
BseDI	CCNNGG	1 cut(s)	115
BseGI	GGATG	2 cut(s)	247, 249
BseLI	CCNNNNNNNGG	1 cut(s)	47
BseXI	GCAGC	2 cut(s)	200, 254
BshFI	GGCC	1 cut(s)	103
BshTI	ACCGGT	1 cut(s)	82
BsiHKCI	CYCGRG	2 cut(s)	55, 116
BsiSI	CCGG	2 cut(s)	83, 100
BslI	CCNNNNNNNGG	1 cut(s)	47
BsmAI	GTCTC	2 cut(s)	101, 114
BsmBI	CGTCTC	1 cut(s)	114
BsmI	GAATGC	2 cut(s)	158, 165
BsnI	GGCC	1 cut(s)	103
Bso31I	GGTCTC	1 cut(s)	101
BsoBI	CYCGRG	2 cut(s)	55, 116
Bsp1286I	GDGCHC	2 cut(s)	29, 124
Bsp143I	GATC	1 cut(s)	44
BspACI	CCGC	4 cut(s)	18, 132, 181, 184
BspANI	GGCC	1 cut(s)	103
BspTNI	GGTCTC	1 cut(s)	101
BsrFI	RCCGGY	1 cut(s)	82
BssAI	RCCGGY	1 cut(s)	82
BssECI	CCNNGG	1 cut(s)	115
BssMI	GATC	1 cut(s)	44
Bst4CI	ACNGT	3 cut(s)	95, 108, 284
BstC8I	GCNNGC	2 cut(s)	137, 247
BstF5I	GGATG	2 cut(s)	247, 249
BstHHI	GCGC	1 cut(s)	62
BstKTI	GATC	1 cut(s)	47
BstMAI	GTCTC	2 cut(s)	101, 114
BstMBI	GATC	1 cut(s)	44
BstMWI	GCNNNNNNNGC	1 cut(s)	183
BstV1I	GCAGC	2 cut(s)	200, 254
BstX2I	RGATCY	1 cut(s)	44
BstYI	RGATCY	1 cut(s)	44
BsuRI	GGCC	1 cut(s)	103
BtsCI	GGATG	2 cut(s)	247, 249
BtsI	GCAGTG	1 cut(s)	176
BtsIMutI	CAGTG	1 cut(s)	176
Cac8I	GCNNGC	2 cut(s)	137, 247
CfoI	GCGC	1 cut(s)	62
Cfr10I	RCCGGY	1 cut(s)	82
Csp6I	GTAC	1 cut(s)	207
CspAI	ACCGGT	1 cut(s)	82
CspCI	CAANNNNNGTGG	2 cut(s)	154, 189
CviJI	RGCY	7 cut(s)	27, 33, 103, 122, 139, 213, 267
CviKI_1	RGCY	7 cut(s)	27, 33, 103, 122, 139, 213, 267
CviQI	GTAC	1 cut(s)	207
DpnI	GATC	1 cut(s)	46
DpnII	GATC	1 cut(s)	44
EaeI	YGGCCR	1 cut(s)	101
Eco24I	GRGCYC	2 cut(s)	29, 124
Eco31I	GGTCTC	1 cut(s)	101
Eco88I	CYCGRG	2 cut(s)	55, 116
EcoT38I	GRGCYC	2 cut(s)	29, 124
Esp3I	CGTCTC	1 cut(s)	114
FaiI	YATR	5 cut(s)	130, 219, 221, 279, 308
Fnu4HI	GCNGC	4 cut(s)	133, 184, 214, 268
FokI	GGATG	2 cut(s)	236, 254
FriOI	GRGCYC	2 cut(s)	29, 124
Fsp4HI	GCNGC	4 cut(s)	133, 184, 214, 268
FspBI	CTAG	4 cut(s)	30, 42, 201, 210
GlaI	GCGC	1 cut(s)	61
GluI	GCNGC	4 cut(s)	133, 184, 214, 268
HaeIII	GGCC	1 cut(s)	103
HapII	CCGG	2 cut(s)	83, 100
HhaI	GCGC	1 cut(s)	62
Hin6I	GCGC	1 cut(s)	60
HinP1I	GCGC	1 cut(s)	60
HinfI	GANTC	1 cut(s)	51
HpaII	CCGG	2 cut(s)	83, 100
HphI	GGTGA	1 cut(s)	97
Hpy166II	GTNNAC	1 cut(s)	207
Hpy188I	TCNGA	1 cut(s)	126
Hpy188III	TCNNGA	2 cut(s)	48, 55
Hpy8I	GTNNAC	1 cut(s)	207
HpyCH4III	ACNGT	3 cut(s)	95, 108, 284
HpyCH4IV	ACGT	1 cut(s)	14
HpyCH4V	TGCA	5 cut(s)	80, 156, 163, 245, 358
HpyF10VI	GCNNNNNNNGC	1 cut(s)	183
HpySE526I	ACGT	1 cut(s)	14
HspAI	GCGC	1 cut(s)	60
Kzo9I	GATC	1 cut(s)	44
LpnPI	CCDG	5 cut(s)	33, 96, 113, 121, 231
Lsp1109I	GCAGC	2 cut(s)	200, 254
LweI	GCATC	2 cut(s)	232, 258
MaeI	CTAG	4 cut(s)	30, 42, 201, 210
MaeII	ACGT	1 cut(s)	14
MalI	GATC	1 cut(s)	46
MboI	GATC	1 cut(s)	44
MflI	RGATCY	1 cut(s)	44
MhlI	GDGCHC	2 cut(s)	29, 124
MluCI	AATT	1 cut(s)	259
MnlI	CCTC	4 cut(s)	75, 81, 125, 307
MseI	TTAA	2 cut(s)	315, 332
MspI	CCGG	2 cut(s)	83, 100
Mva1269I	GAATGC	2 cut(s)	158, 165
MwoI	GCNNNNNNNGC	1 cut(s)	183
NdeII	GATC	1 cut(s)	44
PctI	GAATGC	2 cut(s)	158, 165
PfeI	GAWTC	1 cut(s)	51
PinAI	ACCGGT	1 cut(s)	82
PkrI	GCNGC	4 cut(s)	134, 185, 215, 269
PsuI	RGATCY	1 cut(s)	44
RsaI	GTAC	1 cut(s)	208
RsaNI	GTAC	1 cut(s)	207
SaqAI	TTAA	2 cut(s)	315, 332
SatI	GCNGC	4 cut(s)	133, 184, 214, 268
Sau3AI	GATC	1 cut(s)	44
SduI	GDGCHC	2 cut(s)	29, 124
SetI	ASST	4 cut(s)	17, 67, 206, 215
SfaNI	GCATC	2 cut(s)	232, 258
SgrAI	CRCCGGYG	1 cut(s)	82
Sse9I	AATT	1 cut(s)	259
SsiI	CCGC	4 cut(s)	18, 132, 181, 184
SspMI	CTAG	4 cut(s)	30, 42, 201, 210
TaaI	ACNGT	3 cut(s)	95, 108, 284
TaiI	ACGT	1 cut(s)	17
TasI	AATT	1 cut(s)	259
TatI	WGTACW	1 cut(s)	206
TauI	GCSGC	2 cut(s)	135, 186
TfiI	GAWTC	1 cut(s)	51
Tru1I	TTAA	2 cut(s)	315, 332
Tru9I	TTAA	2 cut(s)	315, 332
TscAI	CASTG	1 cut(s)	176
TseI	GCWGC	2 cut(s)	213, 267
TspDTI	ATGAA	1 cut(s)	165
TspRI	CASTG	1 cut(s)	176
XspI	CTAG	4 cut(s)	30, 42, 201, 210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.