Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008139

Physical Location & Seq

Genomic Coordinates Reverse (-)

32058295 .. 32062388

Gene Structure 4094 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00240370.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCAAAGCTCTCTGATTCCCGCAATTCCAACCGTTCCGATCGTCGGAACAAATACCTGAAGCCGAATCCGGGTGGCCGGAAATCTGGTGCTCGGAAATTGGTGACTCTATTCCAGGGTTTGGGGCTCCAAGACAAAACCCCTTCTTCTTTCATGTTGTCGCCTACGTCAGCTAAAAGCCCTAGCCCTAACCCTAGATCTGGAATCCCGAGCGCACCTCCTACTCCCAATGCACCGGCGAGGCATGGTCTCCGGCCACCGTCTCGCCTCCGTGGCTCGGATATGCGGCAGGTTACGGCTGTTCTCTTCCAGAGCTTTTCGCCGATGAATGCAGAATGCACAAGCAGTGTGGCAACCGCCGCACTCTCTGTTGTGCTAGGTGGTTCATGGAATAAATCCCTTGACTTCTGCAATCGGCATGGAGTTACTTGTGGCACAAGGCATCAAGGAGTAACAGCCTCGAAACTACGGGGTTCGACTTGCAAGGAATCATATCACCCGACATTGGCAACCTCTCTTTTCTCGGGTTCATCGGCCTTCGAGATAAGCGCTTCTCCGGCAAGATTCAACAGCAAGTTGATCATTTGTTCGACTCCGGCATCTAAATCTCCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05169 map04010 map04064 map04620 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05169

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

204

Amino Acids

21.62

Weight (kDa)

10.98

Isoelectric Point (pI)

60.07

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008139)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23480 FvH4_5g23480 FvH4_5g23480 FvH4_5g23480 FvH4_5g23480 FvH4_5g23480
rosa_chinensis	RchiOBHm_Chr7g0212721 RchiOBHm_Chr7g0212751 RchiOBHm_Chr7g0219121
rosa_laevigata	RLG00000002874
rosa_roxburghii	Rroxscaffold_3G00240340 Rroxscaffold_3G00240370 Rroxscaffold_3G00240490 Rroxscaffold_3G00246600 Rroxscaffold_7G00194690
rosa_rugosa	Rorug07G0136200
rosa_samantha	Rh7AG267700 Rh7BG258600 Rh7BG258800 Rh7BG263300 Rh7CG286800 Rh7CG291500 Rh7DG275800 Rh7DG276000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	280
AccB7I	CCANNNNNTGG	1 cut(s)	121
AciI	CCGC	4 cut(s)	22, 286, 357, 360
AcoI	YGGCCR	2 cut(s)	76, 254
AcuI	CTGAAG	1 cut(s)	80
AfeI	AGCGCT	1 cut(s)	550
AfiI	CCNNNNNNNGG	6 cut(s)	45, 71, 121, 200, 277, 505
AgsI	TTSAA	1 cut(s)	568
AjnI	CCWGG	1 cut(s)	114
AluBI	AGCT	3 cut(s)	10, 173, 315
AluI	AGCT	3 cut(s)	10, 173, 315
Alw21I	GWGCWC	1 cut(s)	94
Alw26I	GTCTC	2 cut(s)	254, 267
Ama87I	CYCGRG	2 cut(s)	208, 523
Aor51HI	AGCGCT	1 cut(s)	550
AoxI	GGCC	3 cut(s)	76, 254, 534
AspLEI	GCGC	2 cut(s)	215, 551
AsuC2I	CCSGG	1 cut(s)	72
AsuHPI	GGTGA	2 cut(s)	115, 488
AvaI	CYCGRG	2 cut(s)	208, 523
BanII	GRGCYC	1 cut(s)	129
Bbv12I	GWGCWC	1 cut(s)	94
BceAI	ACGGC	1 cut(s)	312
BciT130I	CCWGG	1 cut(s)	116
BclI	TGATCA	1 cut(s)	579
BcnI	CCSGG	1 cut(s)	72
BcoDI	GTCTC	2 cut(s)	254, 267
BfaI	CTAG	3 cut(s)	183, 195, 377
BfoI	RGCGCY	1 cut(s)	552
BfuAI	ACCTGC	1 cut(s)	280
BglI	GCCNNNNNGGC	1 cut(s)	273
BglII	AGATCT	1 cut(s)	197
BisI	GCNGC	2 cut(s)	287, 360
BlsI	GCNGC	2 cut(s)	288, 361
Bme1390I	CCNGG	2 cut(s)	72, 116
BmeT110I	CYCGRG	2 cut(s)	208, 523
BmiI	GGNNCC	1 cut(s)	128
BmrFI	CCNGG	2 cut(s)	72, 116
BmsI	GCATC	2 cut(s)	451, 608
BplI	GAGNNNNNCTC	2 cut(s)	202, 234
BpuMI	CCSGG	1 cut(s)	72
BsaI	GGTCTC	1 cut(s)	254
BsaJI	CCNNGG	2 cut(s)	115, 271
Bsc4I	CCNNNNNNNGG	6 cut(s)	45, 71, 121, 200, 277, 505
Bse118I	RCCGGY	1 cut(s)	235
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	2 cut(s)	115, 271
BseLI	CCNNNNNNNGG	6 cut(s)	45, 71, 121, 200, 277, 505
Bsh1285I	CGRYCG	1 cut(s)	43
BshFI	GGCC	3 cut(s)	78, 256, 536
BsiEI	CGRYCG	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	94
BsiHKCI	CYCGRG	2 cut(s)	208, 523
BsiSI	CCGG	6 cut(s)	71, 79, 236, 253, 557, 596
BslI	CCNNNNNNNGG	6 cut(s)	45, 71, 121, 200, 277, 505
BsmAI	GTCTC	2 cut(s)	254, 267
BsmBI	CGTCTC	1 cut(s)	267
BsmI	GAATGC	2 cut(s)	334, 341
BsnI	GGCC	3 cut(s)	78, 256, 536
Bso31I	GGTCTC	1 cut(s)	254
BsoBI	CYCGRG	2 cut(s)	208, 523
Bsp1286I	GDGCHC	2 cut(s)	94, 129
Bsp143I	GATC	3 cut(s)	40, 197, 579
BspACI	CCGC	4 cut(s)	22, 286, 357, 360
BspANI	GGCC	3 cut(s)	78, 256, 536
BspLI	GGNNCC	1 cut(s)	128
BspMI	ACCTGC	1 cut(s)	280
BspTNI	GGTCTC	1 cut(s)	254
BsrFI	RCCGGY	1 cut(s)	235
BssAI	RCCGGY	1 cut(s)	235
BssECI	CCNNGG	2 cut(s)	115, 271
BssMI	GATC	3 cut(s)	40, 197, 579
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	2 cut(s)	35, 261
Bst6I	CTCTTC	1 cut(s)	311
BstDSI	CCRYGG	1 cut(s)	271
BstH2I	RGCGCY	1 cut(s)	552
BstHHI	GCGC	2 cut(s)	215, 551
BstKTI	GATC	3 cut(s)	43, 200, 582
BstMAI	GTCTC	2 cut(s)	254, 267
BstMBI	GATC	3 cut(s)	40, 197, 579
BstMCI	CGRYCG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	3 cut(s)	273, 359, 557
BstNI	CCWGG	1 cut(s)	116
BstSCI	CCNGG	2 cut(s)	70, 114
BstX2I	RGATCY	1 cut(s)	197
BstYI	RGATCY	1 cut(s)	197
BsuRI	GGCC	3 cut(s)	78, 256, 536
BtgI	CCRYGG	1 cut(s)	271
BtsI	GCAGTG	1 cut(s)	352
BtsIMutI	CAGTG	1 cut(s)	352
BveI	ACCTGC	1 cut(s)	280
CfoI	GCGC	2 cut(s)	215, 551
Cfr10I	RCCGGY	1 cut(s)	235
CspCI	CAANNNNNGTGG	2 cut(s)	330, 365
CviAII	CATG	4 cut(s)	154, 245, 387, 419
DpnI	GATC	3 cut(s)	42, 199, 581
DpnII	GATC	3 cut(s)	40, 197, 579
EaeI	YGGCCR	2 cut(s)	76, 254
Eam1104I	CTCTTC	1 cut(s)	311
EarI	CTCTTC	1 cut(s)	311
Eco24I	GRGCYC	1 cut(s)	129
Eco31I	GGTCTC	1 cut(s)	254
Eco47III	AGCGCT	1 cut(s)	550
Eco57I	CTGAAG	1 cut(s)	80
Eco88I	CYCGRG	2 cut(s)	208, 523
EcoRII	CCWGG	1 cut(s)	114
EcoT38I	GRGCYC	1 cut(s)	129
Esp3I	CGTCTC	1 cut(s)	267
FaeI	CATG	4 cut(s)	157, 248, 390, 422
FaiI	YATR	6 cut(s)	155, 246, 284, 388, 420, 493
FatI	CATG	4 cut(s)	153, 244, 386, 418
FauI	CCCGC	1 cut(s)	29
FbaI	TGATCA	1 cut(s)	579
Fnu4HI	GCNGC	2 cut(s)	287, 360
FriOI	GRGCYC	1 cut(s)	129
Fsp4HI	GCNGC	2 cut(s)	287, 360
FspBI	CTAG	3 cut(s)	183, 195, 377
GlaI	GCGC	2 cut(s)	214, 550
GluI	GCNGC	2 cut(s)	287, 360
HaeII	RGCGCY	1 cut(s)	552
HaeIII	GGCC	3 cut(s)	78, 256, 536
HapII	CCGG	6 cut(s)	71, 79, 236, 253, 557, 596
HhaI	GCGC	2 cut(s)	215, 551
Hin1II	CATG	4 cut(s)	157, 248, 390, 422
Hin6I	GCGC	2 cut(s)	213, 549
HinP1I	GCGC	2 cut(s)	213, 549
HinfI	GANTC	7 cut(s)	17, 67, 106, 204, 488, 564, 592
HpaII	CCGG	6 cut(s)	71, 79, 236, 253, 557, 596
HphI	GGTGA	2 cut(s)	115, 488
Hpy188I	TCNGA	5 cut(s)	16, 40, 48, 96, 280
Hpy188III	TCNNGA	4 cut(s)	201, 208, 310, 541
Hpy99I	CGWCG	1 cut(s)	48
HpyAV	CCTTC	2 cut(s)	153, 547
HpyCH4III	ACNGT	2 cut(s)	35, 261
HpyCH4IV	ACGT	1 cut(s)	167
HpyCH4V	TGCA	5 cut(s)	233, 332, 339, 411, 483
HpyF10VI	GCNNNNNNNGC	3 cut(s)	273, 359, 557
HpySE526I	ACGT	1 cut(s)	167
Hsp92II	CATG	4 cut(s)	157, 248, 390, 422
HspAI	GCGC	2 cut(s)	213, 549
Ksp22I	TGATCA	1 cut(s)	579
Kzo9I	GATC	3 cut(s)	40, 197, 579
LmnI	GCTCC	1 cut(s)	132
LweI	GCATC	2 cut(s)	451, 608
MaeI	CTAG	3 cut(s)	183, 195, 377
MaeII	ACGT	1 cut(s)	167
MaeIII	GTNAC	4 cut(s)	103, 292, 424, 451
MalI	GATC	3 cut(s)	42, 199, 581
MboI	GATC	3 cut(s)	40, 197, 579
MboII	GAAGA	2 cut(s)	138, 298
MflI	RGATCY	1 cut(s)	197
MhlI	GDGCHC	2 cut(s)	94, 129
MluCI	AATT	2 cut(s)	25, 98
MlyI	GAGTC	2 cut(s)	100, 586
MmeI	TCCRAC	2 cut(s)	26, 54
MnlI	CCTC	5 cut(s)	228, 234, 278, 469, 523
MspI	CCGG	6 cut(s)	71, 79, 236, 253, 557, 596
MspR9I	CCNGG	2 cut(s)	72, 116
Mva1269I	GAATGC	2 cut(s)	334, 341
MvaI	CCWGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	3 cut(s)	273, 359, 557
NciI	CCSGG	1 cut(s)	72
NdeII	GATC	3 cut(s)	40, 197, 579
NlaIII	CATG	4 cut(s)	157, 248, 390, 422
NlaIV	GGNNCC	1 cut(s)	128
NmuCI	GTSAC	1 cut(s)	103
PctI	GAATGC	2 cut(s)	334, 341
PfeI	GAWTC	5 cut(s)	17, 67, 204, 488, 564
PflMI	CCANNNNNTGG	1 cut(s)	121
PkrI	GCNGC	2 cut(s)	288, 361
Ple19I	CGATCG	1 cut(s)	43
PleI	GAGTC	2 cut(s)	100, 586
PpsI	GAGTC	2 cut(s)	100, 586
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	128
PsuI	RGATCY	1 cut(s)	197
PvuI	CGATCG	1 cut(s)	43
SatI	GCNGC	2 cut(s)	287, 360
Sau3AI	GATC	3 cut(s)	40, 197, 579
SchI	GAGTC	2 cut(s)	100, 586
ScrFI	CCNGG	2 cut(s)	72, 116
SduI	GDGCHC	2 cut(s)	94, 129
SetI	ASST	9 cut(s)	12, 60, 170, 175, 220, 294, 317, 382, 515
SfaNI	GCATC	2 cut(s)	451, 608
SgrAI	CRCCGGYG	1 cut(s)	235
Sse9I	AATT	2 cut(s)	25, 98
SsiI	CCGC	4 cut(s)	22, 286, 357, 360
SspMI	CTAG	3 cut(s)	183, 195, 377
StyD4I	CCNGG	2 cut(s)	70, 114
TaaI	ACNGT	2 cut(s)	35, 261
TaiI	ACGT	1 cut(s)	170
TaqI	TCGA	4 cut(s)	461, 476, 540, 590
TasI	AATT	2 cut(s)	25, 98
TauI	GCSGC	2 cut(s)	289, 362
TfiI	GAWTC	5 cut(s)	17, 67, 204, 488, 564
TscAI	CASTG	1 cut(s)	352
TseFI	GTSAC	1 cut(s)	103
Tsp45I	GTSAC	1 cut(s)	103
TspDTI	ATGAA	4 cut(s)	142, 341, 375, 519
TspGWI	ACGGA	2 cut(s)	260, 600
TspRI	CASTG	1 cut(s)	352
Van91I	CCANNNNNTGG	1 cut(s)	121
XspI	CTAG	3 cut(s)	183, 195, 377

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.