Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0008139

Physical Location & Seq

Genomic Coordinates Reverse (-)

29750020 .. 29750800

Gene Structure 781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG291500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGCAAAGCTCTCTGATTCCCGCAATTCCAACCGTTCCGATCGTCGGAACAAATACCTGAAGCCGAATCCGGGTGGCCGGAAATCGGGTCCTCGGAAATTGGCGACTCTATTCCAGGGTTTGGGGCTGCAAGACAAAACCCCTTCTTCGTTGTCGCCTACGTCCGCAAAGAGCCCTAGCCCTAACCCTAGATCTGGAATCCCGAGCGCACCTCCTACTCCCAATGCACCGGCGAGGGACGGTCTCCGGCCACCGTCTCGCCTCCGGGGCTCGGATATGCGGCAGGCTTTTCGCCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

99

Amino Acids

10.69

Weight (kDa)

11.95

Isoelectric Point (pI)

75.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008139)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23480 FvH4_5g23480 FvH4_5g23480 FvH4_5g23480 FvH4_5g23480 FvH4_5g23480
rosa_chinensis	RchiOBHm_Chr7g0212721 RchiOBHm_Chr7g0212751 RchiOBHm_Chr7g0219121
rosa_laevigata	RLG00000002874
rosa_roxburghii	Rroxscaffold_3G00240340 Rroxscaffold_3G00240370 Rroxscaffold_3G00240490 Rroxscaffold_3G00246600 Rroxscaffold_7G00194690
rosa_rugosa	Rorug07G0136200
rosa_samantha	Rh7AG267700 Rh7BG258600 Rh7BG258800 Rh7BG263300 Rh7CG286800 Rh7CG291500 Rh7DG275800 Rh7DG276000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	121
AciI	CCGC	3 cut(s)	22, 165, 280
AcoI	YGGCCR	2 cut(s)	76, 248
AcuI	CTGAAG	1 cut(s)	80
AfiI	CCNNNNNNNGG	6 cut(s)	45, 71, 85, 121, 194, 271
AjnI	CCWGG	1 cut(s)	114
AluBI	AGCT	1 cut(s)	10
AluI	AGCT	1 cut(s)	10
Alw26I	GTCTC	2 cut(s)	248, 261
Ama87I	CYCGRG	1 cut(s)	202
AoxI	GGCC	2 cut(s)	76, 248
ApeKI	GCWGC	1 cut(s)	127
AspLEI	GCGC	1 cut(s)	209
AspS9I	GGNCC	1 cut(s)	89
AsuC2I	CCSGG	2 cut(s)	72, 266
AvaI	CYCGRG	1 cut(s)	202
AvaII	GGWCC	1 cut(s)	89
BanII	GRGCYC	2 cut(s)	176, 272
BbvI	GCAGC	1 cut(s)	114
BcgI	CGANNNNNNTGC	1 cut(s)	272
BciT130I	CCWGG	1 cut(s)	116
BcnI	CCSGG	2 cut(s)	72, 266
BcoDI	GTCTC	2 cut(s)	248, 261
BfaI	CTAG	2 cut(s)	177, 189
BglI	GCCNNNNNGGC	1 cut(s)	267
BglII	AGATCT	1 cut(s)	191
BisI	GCNGC	2 cut(s)	128, 281
BlsI	GCNGC	2 cut(s)	129, 282
Bme1390I	CCNGG	3 cut(s)	72, 116, 266
Bme18I	GGWCC	1 cut(s)	89
BmeT110I	CYCGRG	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	1 cut(s)	90
BmrFI	CCNGG	3 cut(s)	72, 116, 266
BplI	GAGNNNNNCTC	2 cut(s)	196, 228
BpuMI	CCSGG	2 cut(s)	72, 266
BsaI	GGTCTC	1 cut(s)	248
BsaJI	CCNNGG	3 cut(s)	92, 115, 265
Bsc4I	CCNNNNNNNGG	6 cut(s)	45, 71, 85, 121, 194, 271
Bse118I	RCCGGY	1 cut(s)	229
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	3 cut(s)	92, 115, 265
BseLI	CCNNNNNNNGG	6 cut(s)	45, 71, 85, 121, 194, 271
BseXI	GCAGC	1 cut(s)	114
Bsh1285I	CGRYCG	1 cut(s)	43
BshFI	GGCC	2 cut(s)	78, 250
BsiEI	CGRYCG	1 cut(s)	43
BsiHKCI	CYCGRG	1 cut(s)	202
BsiSI	CCGG	5 cut(s)	71, 79, 230, 247, 265
BslFI	GGGAC	1 cut(s)	251
BslI	CCNNNNNNNGG	6 cut(s)	45, 71, 85, 121, 194, 271
BsmAI	GTCTC	2 cut(s)	248, 261
BsmBI	CGTCTC	1 cut(s)	261
BsmFI	GGGAC	1 cut(s)	251
BsnI	GGCC	2 cut(s)	78, 250
Bso31I	GGTCTC	1 cut(s)	248
BsoBI	CYCGRG	1 cut(s)	202
Bsp1286I	GDGCHC	2 cut(s)	176, 272
Bsp143I	GATC	2 cut(s)	40, 191
BspACI	CCGC	3 cut(s)	22, 165, 280
BspANI	GGCC	2 cut(s)	78, 250
BspLI	GGNNCC	1 cut(s)	90
BspTNI	GGTCTC	1 cut(s)	248
BsrFI	RCCGGY	1 cut(s)	229
BssAI	RCCGGY	1 cut(s)	229
BssECI	CCNNGG	3 cut(s)	92, 115, 265
BssMI	GATC	2 cut(s)	40, 191
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	3 cut(s)	35, 242, 255
BstC8I	GCNNGC	1 cut(s)	285
BstHHI	GCGC	1 cut(s)	209
BstKTI	GATC	2 cut(s)	43, 194
BstMAI	GTCTC	2 cut(s)	248, 261
BstMBI	GATC	2 cut(s)	40, 191
BstMCI	CGRYCG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	1 cut(s)	267
BstNI	CCWGG	1 cut(s)	116
BstSCI	CCNGG	3 cut(s)	70, 114, 264
BstV1I	GCAGC	1 cut(s)	114
BstX2I	RGATCY	1 cut(s)	191
BstYI	RGATCY	1 cut(s)	191
BsuRI	GGCC	2 cut(s)	78, 250
Cac8I	GCNNGC	1 cut(s)	285
CfoI	GCGC	1 cut(s)	209
Cfr10I	RCCGGY	1 cut(s)	229
Cfr13I	GGNCC	1 cut(s)	89
CviJI	RGCY	9 cut(s)	10, 64, 78, 127, 174, 180, 250, 270, 287
CviKI_1	RGCY	9 cut(s)	10, 64, 78, 127, 174, 180, 250, 270, 287
DpnI	GATC	2 cut(s)	42, 193
DpnII	GATC	2 cut(s)	40, 191
EaeI	YGGCCR	2 cut(s)	76, 248
Eco24I	GRGCYC	2 cut(s)	176, 272
Eco31I	GGTCTC	1 cut(s)	248
Eco47I	GGWCC	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	80
Eco88I	CYCGRG	1 cut(s)	202
EcoO109I	RGGNCCY	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	114
EcoT38I	GRGCYC	2 cut(s)	176, 272
Esp3I	CGTCTC	1 cut(s)	261
FaiI	YATR	1 cut(s)	278
FaqI	GGGAC	1 cut(s)	251
FauI	CCCGC	1 cut(s)	29
Fnu4HI	GCNGC	2 cut(s)	128, 281
FriOI	GRGCYC	2 cut(s)	176, 272
Fsp4HI	GCNGC	2 cut(s)	128, 281
FspBI	CTAG	2 cut(s)	177, 189
GlaI	GCGC	1 cut(s)	208
GluI	GCNGC	2 cut(s)	128, 281
HaeIII	GGCC	2 cut(s)	78, 250
HapII	CCGG	5 cut(s)	71, 79, 230, 247, 265
HhaI	GCGC	1 cut(s)	209
Hin6I	GCGC	1 cut(s)	207
HinP1I	GCGC	1 cut(s)	207
HinfI	GANTC	4 cut(s)	17, 67, 106, 198
HpaII	CCGG	5 cut(s)	71, 79, 230, 247, 265
Hpy188I	TCNGA	5 cut(s)	16, 40, 48, 96, 274
Hpy188III	TCNNGA	2 cut(s)	195, 202
Hpy99I	CGWCG	1 cut(s)	48
HpyAV	CCTTC	1 cut(s)	153
HpyCH4III	ACNGT	3 cut(s)	35, 242, 255
HpyCH4IV	ACGT	1 cut(s)	161
HpyCH4V	TGCA	2 cut(s)	130, 227
HpyF10VI	GCNNNNNNNGC	1 cut(s)	267
HpySE526I	ACGT	1 cut(s)	161
HspAI	GCGC	1 cut(s)	207
Kzo9I	GATC	2 cut(s)	40, 191
Lsp1109I	GCAGC	1 cut(s)	114
MaeI	CTAG	2 cut(s)	177, 189
MaeII	ACGT	1 cut(s)	161
MalI	GATC	2 cut(s)	42, 193
MboI	GATC	2 cut(s)	40, 191
MboII	GAAGA	1 cut(s)	138
MflI	RGATCY	1 cut(s)	191
MhlI	GDGCHC	2 cut(s)	176, 272
MluCI	AATT	2 cut(s)	25, 98
MlyI	GAGTC	1 cut(s)	100
MmeI	TCCRAC	2 cut(s)	26, 54
MnlI	CCTC	4 cut(s)	102, 222, 228, 272
MspI	CCGG	5 cut(s)	71, 79, 230, 247, 265
MspR9I	CCNGG	3 cut(s)	72, 116, 266
MvaI	CCWGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	1 cut(s)	267
NciI	CCSGG	2 cut(s)	72, 266
NdeII	GATC	2 cut(s)	40, 191
NlaIV	GGNNCC	1 cut(s)	90
PfeI	GAWTC	3 cut(s)	17, 67, 198
PflMI	CCANNNNNTGG	1 cut(s)	121
PkrI	GCNGC	2 cut(s)	129, 282
Ple19I	CGATCG	1 cut(s)	43
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PpuMI	RGGWCCY	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	89
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	89
PspPPI	RGGWCCY	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	191
PvuI	CGATCG	1 cut(s)	43
SatI	GCNGC	2 cut(s)	128, 281
Sau3AI	GATC	2 cut(s)	40, 191
Sau96I	GGNCC	1 cut(s)	89
SchI	GAGTC	1 cut(s)	100
ScrFI	CCNGG	3 cut(s)	72, 116, 266
SduI	GDGCHC	2 cut(s)	176, 272
SetI	ASST	4 cut(s)	12, 60, 164, 214
SgrAI	CRCCGGYG	1 cut(s)	229
SinI	GGWCC	1 cut(s)	89
Sse9I	AATT	2 cut(s)	25, 98
SsiI	CCGC	3 cut(s)	22, 165, 280
SspMI	CTAG	2 cut(s)	177, 189
StyD4I	CCNGG	3 cut(s)	70, 114, 264
TaaI	ACNGT	3 cut(s)	35, 242, 255
TaiI	ACGT	1 cut(s)	164
TasI	AATT	2 cut(s)	25, 98
TauI	GCSGC	1 cut(s)	283
TfiI	GAWTC	3 cut(s)	17, 67, 198
TseI	GCWGC	1 cut(s)	127
Van91I	CCANNNNNTGG	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	89
XspI	CTAG	2 cut(s)	177, 189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.