Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008139

Physical Location & Seq

Genomic Coordinates Reverse (-)

32027381 .. 32028877

Gene Structure 1497 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00240340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGCAAAGCTCTCTGATTCCCGCAATTCCAACCGTTCCGATTGCCGGAAAAAAATACCTGAAGCCGAATCTGGGTGGCCGGAAATCGGGTCCTCGGAAATTGGCGACGCTATTCCAGGGTTTGGGGCTCCAAGACAAACCCCTTCTTCTTTCATGTTGTCGCCTACGTCAGCAAAGAGCCCTAGCCCTAACCCTAGATCTGGAATCCCGAGCGCACCTCCTACTCCCAATGCACCGGCGAGGCATGGTCTCCGGCCACCGTCTCGCCTCCGTGGCTCGGATATGCGGCAGGTTACGGCTGTTCTCTTTCAGAGTCAGATTTCTCTTTGCAATTTTAAGCCTTCGGCTAAAGTTTTGTTCTTTGAGGAAGAGGTGTCTCAGGCGCGTGTTTTGTTTAGTTGGCTTTTCGCCGATGAATGCAGAATGCACGAGAGTGCATCCATGAAAATTTGGGATGCTCTCTCTATGACTCTTAGTTGGAGTTTTCCTGCAAAGAATTGGTGGCAGAGACTCTCTGCTTCTGGTGTATTACGGAGTTATTGTAGTTTTTCATTGAAGGGGAATCTCTGCCATGCTTGGAGTTGGTCAAGATTTGGATGCAGAGCTTTGGGGACTTTTAAAGAGATTGGGATTGGATTGGGTTACAGGTCTCAGCTCGACTCCAACCTATTCACATGCTTCATCAAAGGATTTGCTACACAGAACCAAAAAAGCTTGGAGACAACTTGGCTGGTTGCAGATTTTTCAATATTTCTGTTAGAAAGTGATTTCTCCAGGTCTGCTGATATTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

264

Amino Acids

29.3

Weight (kDa)

9.3

Isoelectric Point (pI)

51.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008139)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23480 FvH4_5g23480 FvH4_5g23480 FvH4_5g23480 FvH4_5g23480 FvH4_5g23480
rosa_chinensis	RchiOBHm_Chr7g0212721 RchiOBHm_Chr7g0212751 RchiOBHm_Chr7g0219121
rosa_laevigata	RLG00000002874
rosa_roxburghii	Rroxscaffold_3G00240340 Rroxscaffold_3G00240370 Rroxscaffold_3G00240490 Rroxscaffold_3G00246600 Rroxscaffold_7G00194690
rosa_rugosa	Rorug07G0136200
rosa_samantha	Rh7AG267700 Rh7BG258600 Rh7BG258800 Rh7BG263300 Rh7CG286800 Rh7CG291500 Rh7DG275800 Rh7DG276000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	280
AccB7I	CCANNNNNTGG	1 cut(s)	122
AccII	CGCG	1 cut(s)	385
AciI	CCGC	2 cut(s)	22, 286
AcoI	YGGCCR	2 cut(s)	77, 254
AcsI	RAATTY	1 cut(s)	447
AcuI	CTGAAG	1 cut(s)	81
AfiI	CCNNNNNNNGG	6 cut(s)	45, 72, 86, 122, 200, 277
AgsI	TTSAA	2 cut(s)	556, 747
AjnI	CCWGG	2 cut(s)	115, 773
AleI	CACNNNNGTG	1 cut(s)	432
AluBI	AGCT	4 cut(s)	10, 605, 655, 714
AluI	AGCT	4 cut(s)	10, 605, 655, 714
Alw26I	GTCTC	6 cut(s)	254, 267, 381, 502, 654, 713
Ama87I	CYCGRG	1 cut(s)	208
AoxI	GGCC	2 cut(s)	77, 254
ApoI	RAATTY	1 cut(s)	447
AspLEI	GCGC	2 cut(s)	215, 385
AspS9I	GGNCC	1 cut(s)	90
AvaI	CYCGRG	1 cut(s)	208
AvaII	GGWCC	1 cut(s)	90
BanII	GRGCYC	2 cut(s)	130, 182
BauI	CACGAG	1 cut(s)	428
BceAI	ACGGC	1 cut(s)	312
BciT130I	CCWGG	2 cut(s)	117, 775
BcoDI	GTCTC	6 cut(s)	254, 267, 381, 502, 654, 713
BfaI	CTAG	2 cut(s)	183, 195
BfuAI	ACCTGC	1 cut(s)	280
BglI	GCCNNNNNGGC	1 cut(s)	273
BglII	AGATCT	1 cut(s)	197
BisI	GCNGC	1 cut(s)	287
BlsI	GCNGC	1 cut(s)	288
Bme1390I	CCNGG	2 cut(s)	117, 775
Bme18I	GGWCC	1 cut(s)	90
BmeT110I	CYCGRG	1 cut(s)	208
BmgT120I	GGNCC	1 cut(s)	90
BmiI	GGNNCC	2 cut(s)	91, 129
BmrFI	CCNGG	2 cut(s)	117, 775
BmsI	GCATC	3 cut(s)	445, 446, 587
BplI	GAGNNNNNCTC	2 cut(s)	202, 234
BpmI	CTGGAG	1 cut(s)	757
BsaI	GGTCTC	2 cut(s)	254, 654
BsaJI	CCNNGG	3 cut(s)	93, 116, 271
BsaXI	ACNNNNNCTCC	2 cut(s)	526, 556
Bsc4I	CCNNNNNNNGG	6 cut(s)	45, 72, 86, 122, 200, 277
Bse118I	RCCGGY	1 cut(s)	235
BseBI	CCWGG	2 cut(s)	117, 775
BseDI	CCNNGG	3 cut(s)	93, 116, 271
BseGI	GGATG	3 cut(s)	437, 460, 602
BseLI	CCNNNNNNNGG	6 cut(s)	45, 72, 86, 122, 200, 277
BseMII	CTCAG	2 cut(s)	392, 665
Bsh1236I	CGCG	1 cut(s)	385
BshFI	GGCC	2 cut(s)	79, 256
BsiHKCI	CYCGRG	1 cut(s)	208
BsiSI	CCGG	4 cut(s)	46, 80, 236, 253
BslFI	GGGAC	1 cut(s)	625
BslI	CCNNNNNNNGG	6 cut(s)	45, 72, 86, 122, 200, 277
BsmAI	GTCTC	6 cut(s)	254, 267, 381, 502, 654, 713
BsmBI	CGTCTC	1 cut(s)	267
BsmFI	GGGAC	1 cut(s)	625
BsmI	GAATGC	2 cut(s)	422, 429
BsnI	GGCC	2 cut(s)	79, 256
Bso31I	GGTCTC	2 cut(s)	254, 654
BsoBI	CYCGRG	1 cut(s)	208
Bsp1286I	GDGCHC	2 cut(s)	130, 182
Bsp143I	GATC	1 cut(s)	197
BspACI	CCGC	2 cut(s)	22, 286
BspANI	GGCC	2 cut(s)	79, 256
BspCNI	CTCAG	2 cut(s)	391, 664
BspFNI	CGCG	1 cut(s)	385
BspLI	GGNNCC	2 cut(s)	91, 129
BspMI	ACCTGC	1 cut(s)	280
BspTNI	GGTCTC	2 cut(s)	254, 654
BsrFI	RCCGGY	1 cut(s)	235
BssAI	RCCGGY	1 cut(s)	235
BssECI	CCNNGG	3 cut(s)	93, 116, 271
BssMI	GATC	1 cut(s)	197
BssSI	CACGAG	1 cut(s)	428
Bst2BI	CACGAG	1 cut(s)	428
Bst2UI	CCWGG	2 cut(s)	117, 775
Bst4CI	ACNGT	2 cut(s)	35, 261
Bst6I	CTCTTC	1 cut(s)	363
BstDEI	CTNAG	3 cut(s)	378, 473, 651
BstDSI	CCRYGG	1 cut(s)	271
BstF5I	GGATG	3 cut(s)	437, 460, 602
BstFNI	CGCG	1 cut(s)	385
BstHHI	GCGC	2 cut(s)	215, 385
BstKTI	GATC	1 cut(s)	200
BstMAI	GTCTC	6 cut(s)	254, 267, 381, 502, 654, 713
BstMBI	GATC	1 cut(s)	197
BstMWI	GCNNNNNNNGC	1 cut(s)	273
BstNI	CCWGG	2 cut(s)	117, 775
BstNSI	RCATGY	1 cut(s)	678
BstSCI	CCNGG	2 cut(s)	115, 773
BstUI	CGCG	1 cut(s)	385
BstX2I	RGATCY	1 cut(s)	197
BstYI	RGATCY	1 cut(s)	197
BsuRI	GGCC	2 cut(s)	79, 256
BtgI	CCRYGG	1 cut(s)	271
BtsCI	GGATG	3 cut(s)	437, 460, 602
BveI	ACCTGC	1 cut(s)	280
CfoI	GCGC	2 cut(s)	215, 385
Cfr10I	RCCGGY	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	90
CseI	GACGC	1 cut(s)	116
CviAII	CATG	5 cut(s)	154, 245, 442, 572, 675
DdeI	CTNAG	3 cut(s)	378, 473, 651
DpnI	GATC	1 cut(s)	199
DpnII	GATC	1 cut(s)	197
DraI	TTTAAA	1 cut(s)	619
EaeI	YGGCCR	2 cut(s)	77, 254
Eam1104I	CTCTTC	1 cut(s)	363
EarI	CTCTTC	1 cut(s)	363
Eco24I	GRGCYC	2 cut(s)	130, 182
Eco31I	GGTCTC	2 cut(s)	254, 654
Eco47I	GGWCC	1 cut(s)	90
Eco57I	CTGAAG	1 cut(s)	81
Eco88I	CYCGRG	1 cut(s)	208
EcoO109I	RGGNCCY	1 cut(s)	90
EcoRII	CCWGG	2 cut(s)	115, 773
EcoT38I	GRGCYC	2 cut(s)	130, 182
Esp3I	CGTCTC	1 cut(s)	267
FaeI	CATG	5 cut(s)	157, 248, 445, 575, 678
FaiI	YATR	7 cut(s)	155, 246, 284, 443, 467, 573, 676
FaqI	GGGAC	1 cut(s)	625
FatI	CATG	5 cut(s)	153, 244, 441, 571, 674
FauI	CCCGC	1 cut(s)	29
Fnu4HI	GCNGC	1 cut(s)	287
FokI	GGATG	3 cut(s)	424, 467, 609
FriOI	GRGCYC	2 cut(s)	130, 182
Fsp4HI	GCNGC	1 cut(s)	287
FspBI	CTAG	2 cut(s)	183, 195
GlaI	GCGC	2 cut(s)	214, 384
GluI	GCNGC	1 cut(s)	287
GsuI	CTGGAG	1 cut(s)	757
HaeIII	GGCC	2 cut(s)	79, 256
HapII	CCGG	4 cut(s)	46, 80, 236, 253
HgaI	GACGC	1 cut(s)	116
HhaI	GCGC	2 cut(s)	215, 385
Hin1II	CATG	5 cut(s)	157, 248, 445, 575, 678
Hin6I	GCGC	2 cut(s)	213, 383
HinP1I	GCGC	2 cut(s)	213, 383
HindIII	AAGCTT	1 cut(s)	712
HinfI	GANTC	8 cut(s)	17, 68, 204, 313, 469, 510, 562, 659
HpaII	CCGG	4 cut(s)	46, 80, 236, 253
Hpy188I	TCNGA	6 cut(s)	16, 40, 97, 280, 312, 318
Hpy188III	TCNNGA	3 cut(s)	201, 208, 588
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	3 cut(s)	153, 351, 550
HpyCH4III	ACNGT	2 cut(s)	35, 261
HpyCH4IV	ACGT	1 cut(s)	167
HpyCH4V	TGCA	8 cut(s)	233, 330, 420, 427, 437, 491, 600, 737
HpyF10VI	GCNNNNNNNGC	1 cut(s)	273
HpyF3I	CTNAG	3 cut(s)	378, 473, 651
HpySE526I	ACGT	1 cut(s)	167
Hsp92II	CATG	5 cut(s)	157, 248, 445, 575, 678
HspAI	GCGC	2 cut(s)	213, 383
Kzo9I	GATC	1 cut(s)	197
LmnI	GCTCC	1 cut(s)	133
LweI	GCATC	3 cut(s)	445, 446, 587
MaeI	CTAG	2 cut(s)	183, 195
MaeII	ACGT	1 cut(s)	167
MaeIII	GTNAC	2 cut(s)	292, 641
MalI	GATC	1 cut(s)	199
MboI	GATC	1 cut(s)	197
MboII	GAAGA	2 cut(s)	138, 380
MflI	RGATCY	1 cut(s)	197
MhlI	GDGCHC	2 cut(s)	130, 182
MluCI	AATT	5 cut(s)	25, 99, 331, 447, 496
MlyI	GAGTC	4 cut(s)	322, 463, 504, 653
MmeI	TCCRAC	3 cut(s)	54, 458, 687
MnlI	CCTC	6 cut(s)	103, 228, 234, 278, 358, 364
MseI	TTAA	2 cut(s)	336, 618
MslI	CAYNNNNRTG	1 cut(s)	432
MspI	CCGG	4 cut(s)	46, 80, 236, 253
MspR9I	CCNGG	2 cut(s)	117, 775
Mva1269I	GAATGC	2 cut(s)	422, 429
MvaI	CCWGG	2 cut(s)	117, 775
MvnI	CGCG	1 cut(s)	385
MwoI	GCNNNNNNNGC	1 cut(s)	273
NdeII	GATC	1 cut(s)	197
NlaIII	CATG	5 cut(s)	157, 248, 445, 575, 678
NlaIV	GGNNCC	2 cut(s)	91, 129
NspI	RCATGY	1 cut(s)	678
OliI	CACNNNNGTG	1 cut(s)	432
PctI	GAATGC	2 cut(s)	422, 429
PfeI	GAWTC	4 cut(s)	17, 68, 204, 562
PflMI	CCANNNNNTGG	1 cut(s)	122
PkrI	GCNGC	1 cut(s)	288
PleI	GAGTC	4 cut(s)	321, 463, 504, 653
PpsI	GAGTC	4 cut(s)	321, 463, 504, 653
PpuMI	RGGWCCY	1 cut(s)	90
Psp5II	RGGWCCY	1 cut(s)	90
Psp6I	CCWGG	2 cut(s)	115, 773
PspGI	CCWGG	2 cut(s)	115, 773
PspN4I	GGNNCC	2 cut(s)	91, 129
PspPI	GGNCC	1 cut(s)	90
PspPPI	RGGWCCY	1 cut(s)	90
PsuI	RGATCY	1 cut(s)	197
RseI	CAYNNNNRTG	1 cut(s)	432
SaqAI	TTAA	2 cut(s)	336, 618
SatI	GCNGC	1 cut(s)	287
Sau3AI	GATC	1 cut(s)	197
Sau96I	GGNCC	1 cut(s)	90
SchI	GAGTC	4 cut(s)	322, 463, 504, 653
ScrFI	CCNGG	2 cut(s)	117, 775
SduI	GDGCHC	2 cut(s)	130, 182
SfaNI	GCATC	3 cut(s)	445, 446, 587
SgrAI	CRCCGGYG	1 cut(s)	235
SinI	GGWCC	1 cut(s)	90
SmiMI	CAYNNNNRTG	1 cut(s)	432
Sse9I	AATT	5 cut(s)	25, 99, 331, 447, 496
SsiI	CCGC	2 cut(s)	22, 286
SspI	AATATT	1 cut(s)	750
SspMI	CTAG	2 cut(s)	183, 195
StyD4I	CCNGG	2 cut(s)	115, 773
TaaI	ACNGT	2 cut(s)	35, 261
TaiI	ACGT	1 cut(s)	170
TaqI	TCGA	1 cut(s)	657
TasI	AATT	5 cut(s)	25, 99, 331, 447, 496
TauI	GCSGC	1 cut(s)	289
TfiI	GAWTC	4 cut(s)	17, 68, 204, 562
Tru1I	TTAA	2 cut(s)	336, 618
Tru9I	TTAA	2 cut(s)	336, 618
TspDTI	ATGAA	5 cut(s)	142, 429, 458, 540, 670
TspGWI	ACGGA	2 cut(s)	260, 547
Van91I	CCANNNNNTGG	1 cut(s)	122
VpaK11BI	GGWCC	1 cut(s)	90
XapI	RAATTY	1 cut(s)	447
XceI	RCATGY	1 cut(s)	678
XspI	CTAG	2 cut(s)	183, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.