Rh7BG258600

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0008139
Physical Location & Seq
Reverse (-)
23531911 .. 23533998
2088 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG258600.1

Sequence Viewer

Length: 420 bp
ATGGCAAAGCTCTCTGATTCCCGCAATTCCAAGCGTTCCGATCGTCGGAACAAATACCTGAAGCCGAATCCGGCTGGCCGGAAATCGGGTCCTCGGAAATTGGCGACTCTATTCCAGGGTTTGGGGCTCCAAGACAAAACCCCTTCTTCTTTCATGTTGTCGCCTACGTCAGCAAAGAGCCCTAGCCCTAACCCTAGATCTGGAATCCCGAGCTCACCTCCTACCCCCAATGCACCGGCGAGGCACGGTCTCCGGCCACCGTCTCGCCTCCGGGGCTCGGATATGCGGCAGGTTACGGCTGTTCTCTTTCAGAGTCAGATTTCTCTTTGCACTTTTAAGCCTTCCGCTAAAGTTTTGTTCTTTGAGGAAGAGGTGTCTGAGGCGCGTGTTTTGTTTAGTGGGTTAAGCCTAGATTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.14

Weight (kDa)

11.18

Isoelectric Point (pI)

75.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 280
AccB7I CCANNNNNTGG 1 cut(s) 121
AccII CGCG 1 cut(s) 385
AciI CCGC 3 cut(s) 22, 286, 345
AcoI YGGCCR 2 cut(s) 76, 254
AcuI CTGAAG 1 cut(s) 80
AfiI CCNNNNNNNGG 5 cut(s) 45, 85, 121, 200, 277
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 2 cut(s) 10, 213
AluI AGCT 2 cut(s) 10, 213
Alw21I GWGCWC 1 cut(s) 215
Alw26I GTCTC 2 cut(s) 254, 267
Ama87I CYCGRG 1 cut(s) 208
AoxI GGCC 2 cut(s) 76, 254
AspLEI GCGC 1 cut(s) 385
AspS9I GGNCC 1 cut(s) 89
AsuC2I CCSGG 1 cut(s) 272
AsuHPI GGTGA 1 cut(s) 207
AvaI CYCGRG 1 cut(s) 208
AvaII GGWCC 1 cut(s) 89
BanII GRGCYC 4 cut(s) 129, 182, 215, 278
Bbv12I GWGCWC 1 cut(s) 215
BceAI ACGGC 1 cut(s) 312
BciT130I CCWGG 1 cut(s) 116
BcnI CCSGG 1 cut(s) 272
BcoDI GTCTC 2 cut(s) 254, 267
BfaI CTAG 3 cut(s) 183, 195, 410
BfuAI ACCTGC 1 cut(s) 280
BglI GCCNNNNNGGC 1 cut(s) 273
BglII AGATCT 1 cut(s) 197
BisI GCNGC 1 cut(s) 287
BlsI GCNGC 1 cut(s) 288
Bme1390I CCNGG 2 cut(s) 116, 272
Bme18I GGWCC 1 cut(s) 89
BmeT110I CYCGRG 1 cut(s) 208
BmgT120I GGNCC 1 cut(s) 89
BmiI GGNNCC 2 cut(s) 90, 128
BmrFI CCNGG 2 cut(s) 116, 272
BplI GAGNNNNNCTC 2 cut(s) 202, 234
BpuMI CCSGG 1 cut(s) 272
BsaI GGTCTC 1 cut(s) 254
BsaJI CCNNGG 3 cut(s) 92, 115, 271
Bsc4I CCNNNNNNNGG 5 cut(s) 45, 85, 121, 200, 277
Bse118I RCCGGY 1 cut(s) 235
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 3 cut(s) 92, 115, 271
BseLI CCNNNNNNNGG 5 cut(s) 45, 85, 121, 200, 277
BseMII CTCAG 1 cut(s) 369
Bsh1236I CGCG 1 cut(s) 385
Bsh1285I CGRYCG 1 cut(s) 43
BshFI GGCC 2 cut(s) 78, 256
BsiEI CGRYCG 1 cut(s) 43
BsiHKAI GWGCWC 1 cut(s) 215
BsiHKCI CYCGRG 1 cut(s) 208
BsiSI CCGG 5 cut(s) 71, 79, 236, 253, 271
BslI CCNNNNNNNGG 5 cut(s) 45, 85, 121, 200, 277
BsmAI GTCTC 2 cut(s) 254, 267
BsmBI CGTCTC 1 cut(s) 267
BsnI GGCC 2 cut(s) 78, 256
Bso31I GGTCTC 1 cut(s) 254
BsoBI CYCGRG 1 cut(s) 208
Bsp1286I GDGCHC 4 cut(s) 129, 182, 215, 278
Bsp143I GATC 2 cut(s) 40, 197
BspACI CCGC 3 cut(s) 22, 286, 345
BspANI GGCC 2 cut(s) 78, 256
BspCNI CTCAG 1 cut(s) 370
BspFNI CGCG 1 cut(s) 385
BspLI GGNNCC 2 cut(s) 90, 128
BspMI ACCTGC 1 cut(s) 280
BspTNI GGTCTC 1 cut(s) 254
BsrFI RCCGGY 1 cut(s) 235
BssAI RCCGGY 1 cut(s) 235
BssECI CCNNGG 3 cut(s) 92, 115, 271
BssMI GATC 2 cut(s) 40, 197
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 2 cut(s) 248, 261
Bst6I CTCTTC 1 cut(s) 363
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 1 cut(s) 378
BstFNI CGCG 1 cut(s) 385
BstHHI GCGC 1 cut(s) 385
BstKTI GATC 2 cut(s) 43, 200
BstMAI GTCTC 2 cut(s) 254, 267
BstMBI GATC 2 cut(s) 40, 197
BstMCI CGRYCG 1 cut(s) 43
BstMWI GCNNNNNNNGC 1 cut(s) 273
BstNI CCWGG 1 cut(s) 116
BstSCI CCNGG 2 cut(s) 114, 270
BstUI CGCG 1 cut(s) 385
BstX2I RGATCY 1 cut(s) 197
BstYI RGATCY 1 cut(s) 197
BsuRI GGCC 2 cut(s) 78, 256
BveI ACCTGC 1 cut(s) 280
Cac8I GCNNGC 1 cut(s) 76
CfoI GCGC 1 cut(s) 385
Cfr10I RCCGGY 1 cut(s) 235
Cfr13I GGNCC 1 cut(s) 89
CviAII CATG 1 cut(s) 154
DdeI CTNAG 1 cut(s) 378
DpnI GATC 2 cut(s) 42, 199
DpnII GATC 2 cut(s) 40, 197
EaeI YGGCCR 2 cut(s) 76, 254
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Ecl136II GAGCTC 1 cut(s) 213
Eco24I GRGCYC 4 cut(s) 129, 182, 215, 278
Eco31I GGTCTC 1 cut(s) 254
Eco47I GGWCC 1 cut(s) 89
Eco53kI GAGCTC 1 cut(s) 213
Eco57I CTGAAG 1 cut(s) 80
Eco88I CYCGRG 1 cut(s) 208
EcoICRI GAGCTC 1 cut(s) 213
EcoO109I RGGNCCY 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 114
EcoT38I GRGCYC 4 cut(s) 129, 182, 215, 278
Esp3I CGTCTC 1 cut(s) 267
FaeI CATG 1 cut(s) 157
FaiI YATR 2 cut(s) 155, 284
FatI CATG 1 cut(s) 153
FauI CCCGC 1 cut(s) 29
Fnu4HI GCNGC 1 cut(s) 287
FriOI GRGCYC 4 cut(s) 129, 182, 215, 278
Fsp4HI GCNGC 1 cut(s) 287
FspBI CTAG 3 cut(s) 183, 195, 410
GlaI GCGC 1 cut(s) 384
GluI GCNGC 1 cut(s) 287
HaeIII GGCC 2 cut(s) 78, 256
HapII CCGG 5 cut(s) 71, 79, 236, 253, 271
HhaI GCGC 1 cut(s) 385
Hin1II CATG 1 cut(s) 157
Hin6I GCGC 1 cut(s) 383
HinP1I GCGC 1 cut(s) 383
HinfI GANTC 6 cut(s) 17, 67, 106, 204, 313, 413
HpaII CCGG 5 cut(s) 71, 79, 236, 253, 271
HphI GGTGA 1 cut(s) 207
Hpy188I TCNGA 8 cut(s) 16, 40, 48, 96, 280, 312, 318, 379
Hpy188III TCNNGA 3 cut(s) 201, 208, 417
Hpy99I CGWCG 1 cut(s) 48
HpyAV CCTTC 2 cut(s) 153, 351
HpyCH4III ACNGT 2 cut(s) 248, 261
HpyCH4IV ACGT 1 cut(s) 167
HpyCH4V TGCA 2 cut(s) 233, 330
HpyF10VI GCNNNNNNNGC 1 cut(s) 273
HpyF3I CTNAG 1 cut(s) 378
HpySE526I ACGT 1 cut(s) 167
Hsp92II CATG 1 cut(s) 157
HspAI GCGC 1 cut(s) 383
Kzo9I GATC 2 cut(s) 40, 197
LmnI GCTCC 1 cut(s) 132
MaeI CTAG 3 cut(s) 183, 195, 410
MaeII ACGT 1 cut(s) 167
MaeIII GTNAC 1 cut(s) 292
MalI GATC 2 cut(s) 42, 199
MboI GATC 2 cut(s) 40, 197
MboII GAAGA 2 cut(s) 138, 380
MflI RGATCY 1 cut(s) 197
MhlI GDGCHC 4 cut(s) 129, 182, 215, 278
MluCI AATT 2 cut(s) 25, 98
MlyI GAGTC 2 cut(s) 100, 322
MmeI TCCRAC 1 cut(s) 26
MnlI CCTC 7 cut(s) 102, 228, 234, 278, 358, 364, 373
MseI TTAA 2 cut(s) 336, 404
MspI CCGG 5 cut(s) 71, 79, 236, 253, 271
MspR9I CCNGG 2 cut(s) 116, 272
MvaI CCWGG 1 cut(s) 116
MvnI CGCG 1 cut(s) 385
MwoI GCNNNNNNNGC 1 cut(s) 273
NciI CCSGG 1 cut(s) 272
NdeII GATC 2 cut(s) 40, 197
NlaIII CATG 1 cut(s) 157
NlaIV GGNNCC 2 cut(s) 90, 128
PfeI GAWTC 4 cut(s) 17, 67, 204, 413
PflMI CCANNNNNTGG 1 cut(s) 121
PkrI GCNGC 1 cut(s) 288
Ple19I CGATCG 1 cut(s) 43
PleI GAGTC 2 cut(s) 100, 321
PpsI GAGTC 2 cut(s) 100, 321
PpuMI RGGWCCY 1 cut(s) 89
Psp124BI GAGCTC 1 cut(s) 215
Psp5II RGGWCCY 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 2 cut(s) 90, 128
PspPI GGNCC 1 cut(s) 89
PspPPI RGGWCCY 1 cut(s) 89
PsuI RGATCY 1 cut(s) 197
PvuI CGATCG 1 cut(s) 43
SacI GAGCTC 1 cut(s) 215
SaqAI TTAA 2 cut(s) 336, 404
SatI GCNGC 1 cut(s) 287
Sau3AI GATC 2 cut(s) 40, 197
Sau96I GGNCC 1 cut(s) 89
SchI GAGTC 2 cut(s) 100, 322
ScrFI CCNGG 2 cut(s) 116, 272
SduI GDGCHC 4 cut(s) 129, 182, 215, 278
SetI ASST 7 cut(s) 12, 60, 170, 215, 220, 294, 375
SgrAI CRCCGGYG 1 cut(s) 235
SinI GGWCC 1 cut(s) 89
Sse9I AATT 2 cut(s) 25, 98
SsiI CCGC 3 cut(s) 22, 286, 345
SspMI CTAG 3 cut(s) 183, 195, 410
SstI GAGCTC 1 cut(s) 215
StyD4I CCNGG 2 cut(s) 114, 270
TaaI ACNGT 2 cut(s) 248, 261
TaiI ACGT 1 cut(s) 170
TasI AATT 2 cut(s) 25, 98
TauI GCSGC 1 cut(s) 289
TfiI GAWTC 4 cut(s) 17, 67, 204, 413
Tru1I TTAA 2 cut(s) 336, 404
Tru9I TTAA 2 cut(s) 336, 404
TspDTI ATGAA 1 cut(s) 142
Van91I CCANNNNNTGG 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 89
XspI CTAG 3 cut(s) 183, 195, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.