Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0008139

Physical Location & Seq

Genomic Coordinates Forward (+)

29709470 .. 29711209

Gene Structure 1740 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG276000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGGCAAAGCTCTCTGATTCCCGCAATTCCAACCGTTCCAATCGTCGGAACAAATACCTGAAGCCGAATCCGGGTGGCCGGAAATCAGGTCCTCGGAAATTGGCGACTCTATTCCAGGGTTTGGGGCTCCAAGACAAAACCCCTTCTTCTTTCATGTTGTCGCCTACGTCAGCAAAGAGCCCTAGCCCTAACCCTAGATCTGGAATCCCGAGCGCACCTCCTACTCCCAATGCACCGGCGAGGCACGGTCTCCGGCCACCGTCTCGCCTCCGGGGCTCGGATATGCAGCAGGCTTTTCGCCGAAGAATGCAGAATGCACAAGCAGTGTGGCAACCGCCGCACTCTCTGTTGTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

118

Amino Acids

12.95

Weight (kDa)

12.0

Isoelectric Point (pI)

77.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008139)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23480 FvH4_5g23480 FvH4_5g23480 FvH4_5g23480 FvH4_5g23480 FvH4_5g23480
rosa_chinensis	RchiOBHm_Chr7g0212721 RchiOBHm_Chr7g0212751 RchiOBHm_Chr7g0219121
rosa_laevigata	RLG00000002874
rosa_roxburghii	Rroxscaffold_3G00240340 Rroxscaffold_3G00240370 Rroxscaffold_3G00240490 Rroxscaffold_3G00246600 Rroxscaffold_7G00194690
rosa_rugosa	Rorug07G0136200
rosa_samantha	Rh7AG267700 Rh7BG258600 Rh7BG258800 Rh7BG263300 Rh7CG286800 Rh7CG291500 Rh7DG275800 Rh7DG276000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	121
AciI	CCGC	3 cut(s)	22, 335, 338
AcoI	YGGCCR	2 cut(s)	76, 254
AcuI	CTGAAG	1 cut(s)	80
AfiI	CCNNNNNNNGG	5 cut(s)	45, 71, 121, 200, 277
AjnI	CCWGG	1 cut(s)	114
AluBI	AGCT	1 cut(s)	10
AluI	AGCT	1 cut(s)	10
Alw26I	GTCTC	2 cut(s)	254, 267
Ama87I	CYCGRG	1 cut(s)	208
AoxI	GGCC	2 cut(s)	76, 254
ApeKI	GCWGC	1 cut(s)	286
AspLEI	GCGC	1 cut(s)	215
AspS9I	GGNCC	1 cut(s)	89
AsuC2I	CCSGG	2 cut(s)	72, 272
AvaI	CYCGRG	1 cut(s)	208
AvaII	GGWCC	1 cut(s)	89
BanII	GRGCYC	3 cut(s)	129, 182, 278
BbvI	GCAGC	1 cut(s)	298
BcgI	CGANNNNNNTGC	2 cut(s)	278, 312
BciT130I	CCWGG	1 cut(s)	116
BcnI	CCSGG	2 cut(s)	72, 272
BcoDI	GTCTC	2 cut(s)	254, 267
BfaI	CTAG	3 cut(s)	183, 195, 355
BglI	GCCNNNNNGGC	1 cut(s)	273
BglII	AGATCT	1 cut(s)	197
BisI	GCNGC	2 cut(s)	287, 338
BlsI	GCNGC	2 cut(s)	288, 339
Bme1390I	CCNGG	3 cut(s)	72, 116, 272
Bme18I	GGWCC	1 cut(s)	89
BmeT110I	CYCGRG	1 cut(s)	208
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	1 cut(s)	128
BmrFI	CCNGG	3 cut(s)	72, 116, 272
BplI	GAGNNNNNCTC	2 cut(s)	202, 234
BpuMI	CCSGG	2 cut(s)	72, 272
BsaI	GGTCTC	1 cut(s)	254
BsaJI	CCNNGG	3 cut(s)	92, 115, 271
Bsc4I	CCNNNNNNNGG	5 cut(s)	45, 71, 121, 200, 277
Bse118I	RCCGGY	1 cut(s)	235
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	3 cut(s)	92, 115, 271
BseLI	CCNNNNNNNGG	5 cut(s)	45, 71, 121, 200, 277
BseXI	GCAGC	1 cut(s)	298
BshFI	GGCC	2 cut(s)	78, 256
BsiHKCI	CYCGRG	1 cut(s)	208
BsiSI	CCGG	5 cut(s)	71, 79, 236, 253, 271
BslI	CCNNNNNNNGG	5 cut(s)	45, 71, 121, 200, 277
BsmAI	GTCTC	2 cut(s)	254, 267
BsmBI	CGTCTC	1 cut(s)	267
BsmI	GAATGC	2 cut(s)	312, 319
BsnI	GGCC	2 cut(s)	78, 256
Bso31I	GGTCTC	1 cut(s)	254
BsoBI	CYCGRG	1 cut(s)	208
Bsp1286I	GDGCHC	3 cut(s)	129, 182, 278
Bsp143I	GATC	1 cut(s)	197
BspACI	CCGC	3 cut(s)	22, 335, 338
BspANI	GGCC	2 cut(s)	78, 256
BspLI	GGNNCC	1 cut(s)	128
BspTNI	GGTCTC	1 cut(s)	254
BsrFI	RCCGGY	1 cut(s)	235
BssAI	RCCGGY	1 cut(s)	235
BssECI	CCNNGG	3 cut(s)	92, 115, 271
BssMI	GATC	1 cut(s)	197
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	3 cut(s)	35, 248, 261
BstC8I	GCNNGC	1 cut(s)	291
BstHHI	GCGC	1 cut(s)	215
BstKTI	GATC	1 cut(s)	200
BstMAI	GTCTC	2 cut(s)	254, 267
BstMBI	GATC	1 cut(s)	197
BstMWI	GCNNNNNNNGC	2 cut(s)	273, 337
BstNI	CCWGG	1 cut(s)	116
BstSCI	CCNGG	3 cut(s)	70, 114, 270
BstV1I	GCAGC	1 cut(s)	298
BstX2I	RGATCY	1 cut(s)	197
BstYI	RGATCY	1 cut(s)	197
BsuRI	GGCC	2 cut(s)	78, 256
BtsI	GCAGTG	1 cut(s)	330
BtsIMutI	CAGTG	1 cut(s)	330
Cac8I	GCNNGC	1 cut(s)	291
CfoI	GCGC	1 cut(s)	215
Cfr10I	RCCGGY	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	89
CspCI	CAANNNNNGTGG	2 cut(s)	308, 343
CviAII	CATG	1 cut(s)	154
CviJI	RGCY	9 cut(s)	10, 64, 78, 127, 180, 186, 256, 276, 293
CviKI_1	RGCY	9 cut(s)	10, 64, 78, 127, 180, 186, 256, 276, 293
DpnI	GATC	1 cut(s)	199
DpnII	GATC	1 cut(s)	197
EaeI	YGGCCR	2 cut(s)	76, 254
Eco24I	GRGCYC	3 cut(s)	129, 182, 278
Eco31I	GGTCTC	1 cut(s)	254
Eco47I	GGWCC	1 cut(s)	89
Eco57I	CTGAAG	1 cut(s)	80
Eco88I	CYCGRG	1 cut(s)	208
EcoO109I	RGGNCCY	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	114
EcoT38I	GRGCYC	3 cut(s)	129, 182, 278
Esp3I	CGTCTC	1 cut(s)	267
FaeI	CATG	1 cut(s)	157
FaiI	YATR	2 cut(s)	155, 284
FatI	CATG	1 cut(s)	153
FauI	CCCGC	1 cut(s)	29
Fnu4HI	GCNGC	2 cut(s)	287, 338
FriOI	GRGCYC	3 cut(s)	129, 182, 278
Fsp4HI	GCNGC	2 cut(s)	287, 338
FspBI	CTAG	3 cut(s)	183, 195, 355
GlaI	GCGC	1 cut(s)	214
GluI	GCNGC	2 cut(s)	287, 338
HaeIII	GGCC	2 cut(s)	78, 256
HapII	CCGG	5 cut(s)	71, 79, 236, 253, 271
HhaI	GCGC	1 cut(s)	215
Hin1II	CATG	1 cut(s)	157
Hin6I	GCGC	1 cut(s)	213
HinP1I	GCGC	1 cut(s)	213
HinfI	GANTC	4 cut(s)	17, 67, 106, 204
HpaII	CCGG	5 cut(s)	71, 79, 236, 253, 271
Hpy188I	TCNGA	4 cut(s)	16, 48, 96, 280
Hpy188III	TCNNGA	2 cut(s)	201, 208
Hpy99I	CGWCG	1 cut(s)	48
HpyAV	CCTTC	1 cut(s)	153
HpyCH4III	ACNGT	3 cut(s)	35, 248, 261
HpyCH4IV	ACGT	1 cut(s)	167
HpyCH4V	TGCA	4 cut(s)	233, 286, 310, 317
HpyF10VI	GCNNNNNNNGC	2 cut(s)	273, 337
HpySE526I	ACGT	1 cut(s)	167
Hsp92II	CATG	1 cut(s)	157
HspAI	GCGC	1 cut(s)	213
Kzo9I	GATC	1 cut(s)	197
LmnI	GCTCC	1 cut(s)	132
Lsp1109I	GCAGC	1 cut(s)	298
MaeI	CTAG	3 cut(s)	183, 195, 355
MaeII	ACGT	1 cut(s)	167
MalI	GATC	1 cut(s)	199
MboI	GATC	1 cut(s)	197
MboII	GAAGA	2 cut(s)	138, 315
MflI	RGATCY	1 cut(s)	197
MhlI	GDGCHC	3 cut(s)	129, 182, 278
MluCI	AATT	2 cut(s)	25, 98
MlyI	GAGTC	1 cut(s)	100
MmeI	TCCRAC	2 cut(s)	26, 54
MnlI	CCTC	4 cut(s)	102, 228, 234, 278
MspI	CCGG	5 cut(s)	71, 79, 236, 253, 271
MspR9I	CCNGG	3 cut(s)	72, 116, 272
Mva1269I	GAATGC	2 cut(s)	312, 319
MvaI	CCWGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	2 cut(s)	273, 337
NciI	CCSGG	2 cut(s)	72, 272
NdeII	GATC	1 cut(s)	197
NlaIII	CATG	1 cut(s)	157
NlaIV	GGNNCC	1 cut(s)	128
PctI	GAATGC	2 cut(s)	312, 319
PfeI	GAWTC	3 cut(s)	17, 67, 204
PflMI	CCANNNNNTGG	1 cut(s)	121
PkrI	GCNGC	2 cut(s)	288, 339
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
PpuMI	RGGWCCY	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	89
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	1 cut(s)	128
PspPI	GGNCC	1 cut(s)	89
PspPPI	RGGWCCY	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	197
SatI	GCNGC	2 cut(s)	287, 338
Sau3AI	GATC	1 cut(s)	197
Sau96I	GGNCC	1 cut(s)	89
SchI	GAGTC	1 cut(s)	100
ScrFI	CCNGG	3 cut(s)	72, 116, 272
SduI	GDGCHC	3 cut(s)	129, 182, 278
SetI	ASST	5 cut(s)	12, 60, 91, 170, 220
SgrAI	CRCCGGYG	1 cut(s)	235
SinI	GGWCC	1 cut(s)	89
Sse9I	AATT	2 cut(s)	25, 98
SsiI	CCGC	3 cut(s)	22, 335, 338
SspMI	CTAG	3 cut(s)	183, 195, 355
StyD4I	CCNGG	3 cut(s)	70, 114, 270
TaaI	ACNGT	3 cut(s)	35, 248, 261
TaiI	ACGT	1 cut(s)	170
TasI	AATT	2 cut(s)	25, 98
TauI	GCSGC	1 cut(s)	340
TfiI	GAWTC	3 cut(s)	17, 67, 204
TscAI	CASTG	1 cut(s)	330
TseI	GCWGC	1 cut(s)	286
TspDTI	ATGAA	1 cut(s)	142
TspRI	CASTG	1 cut(s)	330
Van91I	CCANNNNNTGG	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	89
XspI	CTAG	3 cut(s)	183, 195, 355

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.