Rroxscaffold_3G00246600

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0008139
Physical Location & Seq
Reverse (-)
39753083 .. 39754868
1786 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00246600.1

Sequence Viewer

Length: 420 bp
ATGGCAAAGCTCTCTGATTCTCGCAATTCCAACCGTTCCGATCGCCGGAACAAATACCTGAAGCCGAATCTGGGTGGCCGGAAATCGGGTGCTCGGAAACTGGCGACTCTATTCCAGGGTTTGGGGCTCCAAGACAAAACCCCTTCTTCTTTCATGTTGTCGCCTACGTCAGCAAAGAGCCCTAGCCCCAATCCTAGATCTGGAATCCCGAGCGCACCTCCTACTCCCAATGCACCGGCGAGGCATGGTCTCCGGCCACCGTCTCGCCTCCGTGGCTCGGATATGCGGCAGGTTACGGCTGTTCTCTTTCAGAGTCAGATTTCTCTTTGCAATTTTAAGCCTTCCGCTAAAGTTTTGTTCTTTGAAGAAGAGGTGTCTGAGGCGCGTGTTTTGTTTAGTGGGTTAAGCCTAGATTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

139

Amino Acids

15.1

Weight (kDa)

11.16

Isoelectric Point (pI)

65.1

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 280
AccB7I CCANNNNNTGG 1 cut(s) 121
AccII CGCG 1 cut(s) 385
AciI CCGC 2 cut(s) 286, 345
AcoI YGGCCR 2 cut(s) 76, 254
AcuI CTGAAG 1 cut(s) 80
AfiI CCNNNNNNNGG 6 cut(s) 45, 71, 85, 121, 200, 277
AgsI TTSAA 1 cut(s) 365
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 1 cut(s) 10
AluI AGCT 1 cut(s) 10
Alw21I GWGCWC 1 cut(s) 94
Alw26I GTCTC 2 cut(s) 254, 267
Ama87I CYCGRG 1 cut(s) 208
AoxI GGCC 2 cut(s) 76, 254
AspLEI GCGC 2 cut(s) 215, 385
AvaI CYCGRG 1 cut(s) 208
BanII GRGCYC 2 cut(s) 129, 182
Bbv12I GWGCWC 1 cut(s) 94
BceAI ACGGC 1 cut(s) 312
BciT130I CCWGG 1 cut(s) 116
BcoDI GTCTC 2 cut(s) 254, 267
BfaI CTAG 3 cut(s) 183, 195, 410
BfuAI ACCTGC 1 cut(s) 280
BglI GCCNNNNNGGC 1 cut(s) 273
BglII AGATCT 1 cut(s) 197
BisI GCNGC 1 cut(s) 287
BlsI GCNGC 1 cut(s) 288
Bme1390I CCNGG 1 cut(s) 116
BmeT110I CYCGRG 1 cut(s) 208
BmiI GGNNCC 1 cut(s) 128
BmrFI CCNGG 1 cut(s) 116
BplI GAGNNNNNCTC 2 cut(s) 202, 234
BsaI GGTCTC 1 cut(s) 254
BsaJI CCNNGG 2 cut(s) 115, 271
Bsc4I CCNNNNNNNGG 6 cut(s) 45, 71, 85, 121, 200, 277
Bse118I RCCGGY 1 cut(s) 235
Bse1I ACTGG 1 cut(s) 105
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 2 cut(s) 115, 271
BseLI CCNNNNNNNGG 6 cut(s) 45, 71, 85, 121, 200, 277
BseMII CTCAG 1 cut(s) 369
BseNI ACTGG 1 cut(s) 105
Bsh1236I CGCG 1 cut(s) 385
Bsh1285I CGRYCG 1 cut(s) 43
BshFI GGCC 2 cut(s) 78, 256
BsiEI CGRYCG 1 cut(s) 43
BsiHKAI GWGCWC 1 cut(s) 94
BsiHKCI CYCGRG 1 cut(s) 208
BsiSI CCGG 4 cut(s) 46, 79, 236, 253
BslI CCNNNNNNNGG 6 cut(s) 45, 71, 85, 121, 200, 277
BsmAI GTCTC 2 cut(s) 254, 267
BsmBI CGTCTC 1 cut(s) 267
BsnI GGCC 2 cut(s) 78, 256
Bso31I GGTCTC 1 cut(s) 254
BsoBI CYCGRG 1 cut(s) 208
Bsp1286I GDGCHC 3 cut(s) 94, 129, 182
Bsp143I GATC 2 cut(s) 40, 197
BspACI CCGC 2 cut(s) 286, 345
BspANI GGCC 2 cut(s) 78, 256
BspCNI CTCAG 1 cut(s) 370
BspFNI CGCG 1 cut(s) 385
BspLI GGNNCC 1 cut(s) 128
BspMI ACCTGC 1 cut(s) 280
BspTNI GGTCTC 1 cut(s) 254
BsrFI RCCGGY 1 cut(s) 235
BsrI ACTGG 1 cut(s) 105
BssAI RCCGGY 1 cut(s) 235
BssECI CCNNGG 2 cut(s) 115, 271
BssMI GATC 2 cut(s) 40, 197
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 2 cut(s) 35, 261
Bst6I CTCTTC 1 cut(s) 363
BstDEI CTNAG 1 cut(s) 378
BstDSI CCRYGG 1 cut(s) 271
BstFNI CGCG 1 cut(s) 385
BstHHI GCGC 2 cut(s) 215, 385
BstKTI GATC 2 cut(s) 43, 200
BstMAI GTCTC 2 cut(s) 254, 267
BstMBI GATC 2 cut(s) 40, 197
BstMCI CGRYCG 1 cut(s) 43
BstMWI GCNNNNNNNGC 1 cut(s) 273
BstNI CCWGG 1 cut(s) 116
BstSCI CCNGG 1 cut(s) 114
BstUI CGCG 1 cut(s) 385
BstX2I RGATCY 1 cut(s) 197
BstYI RGATCY 1 cut(s) 197
BsuRI GGCC 2 cut(s) 78, 256
BtgI CCRYGG 1 cut(s) 271
BveI ACCTGC 1 cut(s) 280
CfoI GCGC 2 cut(s) 215, 385
Cfr10I RCCGGY 1 cut(s) 235
CviAII CATG 2 cut(s) 154, 245
DdeI CTNAG 1 cut(s) 378
DpnI GATC 2 cut(s) 42, 199
DpnII GATC 2 cut(s) 40, 197
EaeI YGGCCR 2 cut(s) 76, 254
Eam1104I CTCTTC 1 cut(s) 363
EarI CTCTTC 1 cut(s) 363
Eco24I GRGCYC 2 cut(s) 129, 182
Eco31I GGTCTC 1 cut(s) 254
Eco57I CTGAAG 1 cut(s) 80
Eco88I CYCGRG 1 cut(s) 208
EcoRII CCWGG 1 cut(s) 114
EcoT38I GRGCYC 2 cut(s) 129, 182
Esp3I CGTCTC 1 cut(s) 267
FaeI CATG 2 cut(s) 157, 248
FaiI YATR 3 cut(s) 155, 246, 284
FatI CATG 2 cut(s) 153, 244
Fnu4HI GCNGC 1 cut(s) 287
FriOI GRGCYC 2 cut(s) 129, 182
Fsp4HI GCNGC 1 cut(s) 287
FspBI CTAG 3 cut(s) 183, 195, 410
GlaI GCGC 2 cut(s) 214, 384
GluI GCNGC 1 cut(s) 287
HaeIII GGCC 2 cut(s) 78, 256
HapII CCGG 4 cut(s) 46, 79, 236, 253
HhaI GCGC 2 cut(s) 215, 385
Hin1II CATG 2 cut(s) 157, 248
Hin6I GCGC 2 cut(s) 213, 383
HinP1I GCGC 2 cut(s) 213, 383
HinfI GANTC 6 cut(s) 17, 67, 106, 204, 313, 413
HpaII CCGG 4 cut(s) 46, 79, 236, 253
Hpy188I TCNGA 7 cut(s) 16, 40, 96, 280, 312, 318, 379
Hpy188III TCNNGA 3 cut(s) 201, 208, 417
HpyAV CCTTC 2 cut(s) 153, 351
HpyCH4III ACNGT 2 cut(s) 35, 261
HpyCH4IV ACGT 1 cut(s) 167
HpyCH4V TGCA 2 cut(s) 233, 330
HpyF10VI GCNNNNNNNGC 1 cut(s) 273
HpyF3I CTNAG 1 cut(s) 378
HpySE526I ACGT 1 cut(s) 167
Hsp92II CATG 2 cut(s) 157, 248
HspAI GCGC 2 cut(s) 213, 383
Kzo9I GATC 2 cut(s) 40, 197
LmnI GCTCC 1 cut(s) 132
MaeI CTAG 3 cut(s) 183, 195, 410
MaeII ACGT 1 cut(s) 167
MaeIII GTNAC 1 cut(s) 292
MalI GATC 2 cut(s) 42, 199
MboI GATC 2 cut(s) 40, 197
MboII GAAGA 3 cut(s) 138, 377, 380
MflI RGATCY 1 cut(s) 197
MhlI GDGCHC 3 cut(s) 94, 129, 182
MluCI AATT 2 cut(s) 25, 331
MlyI GAGTC 2 cut(s) 100, 322
MmeI TCCRAC 1 cut(s) 54
MnlI CCTC 5 cut(s) 228, 234, 278, 364, 373
MseI TTAA 2 cut(s) 336, 404
MspI CCGG 4 cut(s) 46, 79, 236, 253
MspR9I CCNGG 1 cut(s) 116
MvaI CCWGG 1 cut(s) 116
MvnI CGCG 1 cut(s) 385
MwoI GCNNNNNNNGC 1 cut(s) 273
NdeII GATC 2 cut(s) 40, 197
NlaIII CATG 2 cut(s) 157, 248
NlaIV GGNNCC 1 cut(s) 128
PfeI GAWTC 4 cut(s) 17, 67, 204, 413
PflMI CCANNNNNTGG 1 cut(s) 121
PkrI GCNGC 1 cut(s) 288
Ple19I CGATCG 1 cut(s) 43
PleI GAGTC 2 cut(s) 100, 321
PpsI GAGTC 2 cut(s) 100, 321
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 128
PsuI RGATCY 1 cut(s) 197
PvuI CGATCG 1 cut(s) 43
SaqAI TTAA 2 cut(s) 336, 404
SatI GCNGC 1 cut(s) 287
Sau3AI GATC 2 cut(s) 40, 197
SchI GAGTC 2 cut(s) 100, 322
ScrFI CCNGG 1 cut(s) 116
SduI GDGCHC 3 cut(s) 94, 129, 182
SetI ASST 6 cut(s) 12, 60, 170, 220, 294, 375
SgrAI CRCCGGYG 1 cut(s) 235
Sse9I AATT 2 cut(s) 25, 331
SsiI CCGC 2 cut(s) 286, 345
SspMI CTAG 3 cut(s) 183, 195, 410
StyD4I CCNGG 1 cut(s) 114
TaaI ACNGT 2 cut(s) 35, 261
TaiI ACGT 1 cut(s) 170
TasI AATT 2 cut(s) 25, 331
TauI GCSGC 1 cut(s) 289
TfiI GAWTC 4 cut(s) 17, 67, 204, 413
Tru1I TTAA 2 cut(s) 336, 404
Tru9I TTAA 2 cut(s) 336, 404
TspDTI ATGAA 1 cut(s) 142
TspGWI ACGGA 1 cut(s) 260
Van91I CCANNNNNTGG 1 cut(s) 121
XspI CTAG 3 cut(s) 183, 195, 410
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.