Rroxscaffold_3G00240490

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0008139
Physical Location & Seq
Forward (+)
32246036 .. 32247338
1303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00240490.1

Sequence Viewer

Length: 714 bp
ATGGCAAAGCTCTCTGATTCCCGCAATTCCAACCGTTCCGATCGTCGGAACAAATACCTGAAGCCGAATCCGGGTGGCCGGAAATCCGGTGCTCGGAAATTGGTGACTCTATTCCAGGGTTTGGGGCTCCAAGACAAAACCCCTTCTTGTTTCATGTTGTCGCCTACGTCAGCAAAGAGCCCTAGCCCTAATCCTAGATTTGGAATCCTGAGCGCACCTCCTACTCCCAATGCACCGGCGAGGCATGGTCTCCGGCCACCGTCTCGCCTCCGTGGCTCGGATATGCGGCAGGTTACGGCTGTTCTCTTCCAGAGTCAGATTTCTCTTTGCAATTTTAAGCCTTCTGCTAAAGTTTTGTTGTTTGAGGAAGAGGTGTCTGAGGCGTGTGTTTTGTTTAGCTTTTCGCCGATGAATGCAGAATGCACAAGCAGTGTGGCAACCGCCGCACTCTCTGTTGTGCTAGGTTATGGTTACTATGAAACCAATAAGGCTGTGAATGCAAAACTTGCAAGAAATGTTGTGCAGCTTGGTTGGAGTTTTGCTGCAGATGATTGGTGGCAGAGTCACTCTACTTGTGGTGTATTACAGAATGATTGTAGTGTTTCATTGAAGGGGATTCTCTACCATGCTTGGAGTTGGTCAAGTGTTGGAGGCGGAGCTTTGGTGCTGTCTCAAGGGTTTGGGATTTTGATTGGGTCGCAGGTCTCAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

25.49

Weight (kDa)

9.72

Isoelectric Point (pI)

53.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 280, 691
AccB7I CCANNNNNTGG 1 cut(s) 121
AciI CCGC 5 cut(s) 22, 286, 441, 444, 654
AcoI YGGCCR 2 cut(s) 76, 254
AcuI CTGAAG 1 cut(s) 80
AfiI CCNNNNNNNGG 6 cut(s) 45, 71, 93, 121, 200, 277
AgsI TTSAA 1 cut(s) 610
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 5 cut(s) 10, 399, 526, 659, 710
AluI AGCT 5 cut(s) 10, 399, 526, 659, 710
Alw21I GWGCWC 1 cut(s) 94
Alw26I GTCTC 4 cut(s) 254, 267, 675, 709
AoxI GGCC 2 cut(s) 76, 254
ApeKI GCWGC 2 cut(s) 523, 542
AspLEI GCGC 1 cut(s) 215
AsuC2I CCSGG 1 cut(s) 72
AsuHPI GGTGA 1 cut(s) 115
BanII GRGCYC 2 cut(s) 129, 182
Bbv12I GWGCWC 1 cut(s) 94
BbvI GCAGC 2 cut(s) 529, 535
BceAI ACGGC 1 cut(s) 312
BciT130I CCWGG 1 cut(s) 116
BcnI CCSGG 1 cut(s) 72
BcoDI GTCTC 4 cut(s) 254, 267, 675, 709
BfaI CTAG 3 cut(s) 183, 195, 461
BfmI CTRYAG 1 cut(s) 543
BfuAI ACCTGC 2 cut(s) 280, 691
BglI GCCNNNNNGGC 1 cut(s) 273
BisI GCNGC 4 cut(s) 287, 444, 524, 543
BlsI GCNGC 4 cut(s) 288, 445, 525, 544
Bme1390I CCNGG 2 cut(s) 72, 116
BmiI GGNNCC 1 cut(s) 128
BmrFI CCNGG 2 cut(s) 72, 116
BplI GAGNNNNNCTC 2 cut(s) 202, 234
Bpu10I CCTNAGC 1 cut(s) 209
BpuEI CTTGAG 1 cut(s) 657
BpuMI CCSGG 1 cut(s) 72
BsaI GGTCTC 2 cut(s) 254, 709
BsaJI CCNNGG 2 cut(s) 115, 271
BsaWI WCCGGW 1 cut(s) 86
BsaXI ACNNNNNCTCC 2 cut(s) 648, 678
Bsc4I CCNNNNNNNGG 6 cut(s) 45, 71, 93, 121, 200, 277
Bse118I RCCGGY 1 cut(s) 235
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 2 cut(s) 115, 271
BseLI CCNNNNNNNGG 6 cut(s) 45, 71, 93, 121, 200, 277
BseMII CTCAG 2 cut(s) 200, 369
BseXI GCAGC 2 cut(s) 529, 535
BsgI GTGCAG 1 cut(s) 542
Bsh1285I CGRYCG 1 cut(s) 43
BshFI GGCC 2 cut(s) 78, 256
BsiEI CGRYCG 1 cut(s) 43
BsiHKAI GWGCWC 1 cut(s) 94
BsiSI CCGG 5 cut(s) 71, 79, 87, 236, 253
BslI CCNNNNNNNGG 6 cut(s) 45, 71, 93, 121, 200, 277
BsmAI GTCTC 4 cut(s) 254, 267, 675, 709
BsmBI CGTCTC 1 cut(s) 267
BsmI GAATGC 3 cut(s) 418, 425, 502
BsnI GGCC 2 cut(s) 78, 256
Bso31I GGTCTC 2 cut(s) 254, 709
Bsp1286I GDGCHC 3 cut(s) 94, 129, 182
Bsp143I GATC 1 cut(s) 40
BspACI CCGC 5 cut(s) 22, 286, 441, 444, 654
BspANI GGCC 2 cut(s) 78, 256
BspCNI CTCAG 2 cut(s) 201, 370
BspLI GGNNCC 1 cut(s) 128
BspMAI CTGCAG 1 cut(s) 547
BspMI ACCTGC 2 cut(s) 280, 691
BspTNI GGTCTC 2 cut(s) 254, 709
BsrFI RCCGGY 1 cut(s) 235
BssAI RCCGGY 1 cut(s) 235
BssECI CCNNGG 2 cut(s) 115, 271
BssMI GATC 1 cut(s) 40
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 2 cut(s) 35, 261
Bst6I CTCTTC 2 cut(s) 311, 363
BstAPI GCANNNNNTGC 1 cut(s) 506
BstDEI CTNAG 3 cut(s) 209, 378, 706
BstDSI CCRYGG 1 cut(s) 271
BstHHI GCGC 1 cut(s) 215
BstKTI GATC 1 cut(s) 43
BstMAI GTCTC 4 cut(s) 254, 267, 675, 709
BstMBI GATC 1 cut(s) 40
BstMCI CGRYCG 1 cut(s) 43
BstMWI GCNNNNNNNGC 4 cut(s) 273, 443, 497, 506
BstNI CCWGG 1 cut(s) 116
BstSCI CCNGG 2 cut(s) 70, 114
BstSFI CTRYAG 1 cut(s) 543
BstV1I GCAGC 2 cut(s) 529, 535
BsuRI GGCC 2 cut(s) 78, 256
BtgI CCRYGG 1 cut(s) 271
BtsI GCAGTG 1 cut(s) 436
BtsIMutI CAGTG 1 cut(s) 436
BveI ACCTGC 2 cut(s) 280, 691
CfoI GCGC 1 cut(s) 215
Cfr10I RCCGGY 1 cut(s) 235
CspCI CAANNNNNGTGG 2 cut(s) 414, 449
CviAII CATG 3 cut(s) 154, 245, 626
DdeI CTNAG 3 cut(s) 209, 378, 706
DpnI GATC 1 cut(s) 42
DpnII GATC 1 cut(s) 40
EaeI YGGCCR 2 cut(s) 76, 254
Eam1104I CTCTTC 2 cut(s) 311, 363
EarI CTCTTC 2 cut(s) 311, 363
EciI GGCGGA 1 cut(s) 669
Eco24I GRGCYC 2 cut(s) 129, 182
Eco31I GGTCTC 2 cut(s) 254, 709
Eco57I CTGAAG 1 cut(s) 80
EcoRII CCWGG 1 cut(s) 114
EcoT38I GRGCYC 2 cut(s) 129, 182
Esp3I CGTCTC 1 cut(s) 267
FaeI CATG 3 cut(s) 157, 248, 629
FaiI YATR 6 cut(s) 155, 246, 284, 468, 477, 627
FatI CATG 3 cut(s) 153, 244, 625
FauI CCCGC 1 cut(s) 29
Fnu4HI GCNGC 4 cut(s) 287, 444, 524, 543
FriOI GRGCYC 2 cut(s) 129, 182
Fsp4HI GCNGC 4 cut(s) 287, 444, 524, 543
FspBI CTAG 3 cut(s) 183, 195, 461
GlaI GCGC 1 cut(s) 214
GluI GCNGC 4 cut(s) 287, 444, 524, 543
HaeIII GGCC 2 cut(s) 78, 256
HapII CCGG 5 cut(s) 71, 79, 87, 236, 253
HhaI GCGC 1 cut(s) 215
Hin1II CATG 3 cut(s) 157, 248, 629
Hin6I GCGC 1 cut(s) 213
HinP1I GCGC 1 cut(s) 213
HinfI GANTC 7 cut(s) 17, 67, 106, 204, 313, 562, 616
HpaII CCGG 5 cut(s) 71, 79, 87, 236, 253
HphI GGTGA 1 cut(s) 115
Hpy188I TCNGA 7 cut(s) 16, 40, 48, 96, 280, 318, 379
Hpy188III TCNNGA 2 cut(s) 208, 310
Hpy99I CGWCG 1 cut(s) 48
HpyAV CCTTC 3 cut(s) 153, 351, 604
HpyCH4III ACNGT 2 cut(s) 35, 261
HpyCH4IV ACGT 1 cut(s) 167
HpyCH4V TGCA 8 cut(s) 233, 330, 416, 423, 500, 509, 523, 545
HpyF10VI GCNNNNNNNGC 4 cut(s) 273, 443, 497, 506
HpyF3I CTNAG 3 cut(s) 209, 378, 706
HpySE526I ACGT 1 cut(s) 167
Hsp92II CATG 3 cut(s) 157, 248, 629
HspAI GCGC 1 cut(s) 213
Kzo9I GATC 1 cut(s) 40
LmnI GCTCC 2 cut(s) 132, 656
Lsp1109I GCAGC 2 cut(s) 529, 535
MaeI CTAG 3 cut(s) 183, 195, 461
MaeII ACGT 1 cut(s) 167
MaeIII GTNAC 4 cut(s) 103, 292, 470, 563
MalI GATC 1 cut(s) 42
MboI GATC 1 cut(s) 40
MboII GAAGA 2 cut(s) 298, 380
MhlI GDGCHC 3 cut(s) 94, 129, 182
MluCI AATT 3 cut(s) 25, 98, 331
MlyI GAGTC 3 cut(s) 100, 322, 571
MmeI TCCRAC 4 cut(s) 26, 54, 512, 628
MnlI CCTC 7 cut(s) 228, 234, 278, 358, 364, 373, 644
MseI TTAA 1 cut(s) 336
MspI CCGG 5 cut(s) 71, 79, 87, 236, 253
MspR9I CCNGG 2 cut(s) 72, 116
Mva1269I GAATGC 3 cut(s) 418, 425, 502
MvaI CCWGG 1 cut(s) 116
MwoI GCNNNNNNNGC 4 cut(s) 273, 443, 497, 506
NciI CCSGG 1 cut(s) 72
NdeII GATC 1 cut(s) 40
NlaIII CATG 3 cut(s) 157, 248, 629
NlaIV GGNNCC 1 cut(s) 128
NmuCI GTSAC 2 cut(s) 103, 563
PctI GAATGC 3 cut(s) 418, 425, 502
PfeI GAWTC 4 cut(s) 17, 67, 204, 616
PflMI CCANNNNNTGG 1 cut(s) 121
PkrI GCNGC 4 cut(s) 288, 445, 525, 544
Ple19I CGATCG 1 cut(s) 43
PleI GAGTC 3 cut(s) 100, 321, 570
PpsI GAGTC 3 cut(s) 100, 321, 570
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 1 cut(s) 128
PstI CTGCAG 1 cut(s) 547
PvuI CGATCG 1 cut(s) 43
SaqAI TTAA 1 cut(s) 336
SatI GCNGC 4 cut(s) 287, 444, 524, 543
Sau3AI GATC 1 cut(s) 40
SchI GAGTC 3 cut(s) 100, 322, 571
ScrFI CCNGG 2 cut(s) 72, 116
SduI GDGCHC 3 cut(s) 94, 129, 182
SfcI CTRYAG 1 cut(s) 543
SgrAI CRCCGGYG 1 cut(s) 235
SmlI CTYRAG 1 cut(s) 672
SmoI CTYRAG 1 cut(s) 672
Sse9I AATT 3 cut(s) 25, 98, 331
SsiI CCGC 5 cut(s) 22, 286, 441, 444, 654
SspMI CTAG 3 cut(s) 183, 195, 461
StyD4I CCNGG 2 cut(s) 70, 114
TaaI ACNGT 2 cut(s) 35, 261
TaiI ACGT 1 cut(s) 170
TasI AATT 3 cut(s) 25, 98, 331
TauI GCSGC 2 cut(s) 289, 446
TfiI GAWTC 4 cut(s) 17, 67, 204, 616
Tru1I TTAA 1 cut(s) 336
Tru9I TTAA 1 cut(s) 336
TscAI CASTG 1 cut(s) 436
TseFI GTSAC 2 cut(s) 103, 563
TseI GCWGC 2 cut(s) 523, 542
Tsp45I GTSAC 2 cut(s) 103, 563
TspDTI ATGAA 4 cut(s) 142, 425, 492, 594
TspGWI ACGGA 1 cut(s) 260
TspRI CASTG 1 cut(s) 436
Van91I CCANNNNNTGG 1 cut(s) 121
XspI CTAG 3 cut(s) 183, 195, 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.