Rh7DG275800

F-Box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0008139
Physical Location & Seq
Forward (+)
29682778 .. 29684493
1716 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG275800.1

Sequence Viewer

Length: 426 bp
ATGGCAAAGCTCTCTGATTCCCGCAATTCCAACCGTTCCGATCGTCGGAATAAATACCTGAACCCGAATCCGGGTGGCCGAAAATCGGGTCCTCGGAAATCGGCGACTCTATTCCAGGGTTTGGGGCTCCAAGACAAAACCCCTTCTTCTTTCATGTTGTCGCCTACGTCCGCAAATAGCCCTAGCCCTAGCCCTAACCCTAGATCTGGAATCCCGAGCGTACCTCCCACTCCCAATGCACCGGAGAGGCACGGTCTCCGGCCACCGTCTCGCCTCCGGGGCTCAGATATGCGGCAGGTTACGGCTGTTCTCTTTCAGAGTCAGATTTCTCTTTGCAATTTTAAGCCTTCGGCTAAAGTTCTCTTCTTTGAGGAAGAGGTGTCTGAGACGCGTGTTTTGTTTAGTGGGTTAAGCCTAGATTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

141

Amino Acids

15.35

Weight (kDa)

10.89

Isoelectric Point (pI)

70.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 286
AccB7I CCANNNNNTGG 1 cut(s) 121
AccII CGCG 1 cut(s) 391
AciI CCGC 3 cut(s) 22, 171, 292
AcoI YGGCCR 2 cut(s) 76, 260
AfaI GTAC 1 cut(s) 222
AfiI CCNNNNNNNGG 6 cut(s) 45, 70, 71, 85, 121, 206
AflIII ACRYGT 1 cut(s) 389
AjnI CCWGG 1 cut(s) 114
AluBI AGCT 1 cut(s) 10
AluI AGCT 1 cut(s) 10
Alw26I GTCTC 3 cut(s) 260, 273, 380
Ama87I CYCGRG 1 cut(s) 214
AoxI GGCC 2 cut(s) 76, 260
ArsI GACNNNNNNTTYG 4 cut(s) 73, 105, 379, 411
AspS9I GGNCC 1 cut(s) 89
AsuC2I CCSGG 2 cut(s) 72, 278
AvaI CYCGRG 1 cut(s) 214
AvaII GGWCC 1 cut(s) 89
BanII GRGCYC 2 cut(s) 129, 284
BceAI ACGGC 1 cut(s) 318
BciT130I CCWGG 1 cut(s) 116
BcnI CCSGG 2 cut(s) 72, 278
BcoDI GTCTC 3 cut(s) 260, 273, 380
BfaI CTAG 4 cut(s) 183, 189, 201, 416
BfuAI ACCTGC 1 cut(s) 286
BglI GCCNNNNNGGC 1 cut(s) 279
BglII AGATCT 1 cut(s) 203
BisI GCNGC 1 cut(s) 293
BlsI GCNGC 1 cut(s) 294
Bme1390I CCNGG 3 cut(s) 72, 116, 278
Bme18I GGWCC 1 cut(s) 89
BmeT110I CYCGRG 1 cut(s) 214
BmgT120I GGNCC 1 cut(s) 89
BmiI GGNNCC 2 cut(s) 90, 128
BmrFI CCNGG 3 cut(s) 72, 116, 278
BplI GAGNNNNNCTC 2 cut(s) 208, 240
BpuMI CCSGG 2 cut(s) 72, 278
BsaI GGTCTC 1 cut(s) 260
BsaJI CCNNGG 3 cut(s) 92, 115, 277
BsaWI WCCGGW 1 cut(s) 241
Bsc4I CCNNNNNNNGG 6 cut(s) 45, 70, 71, 85, 121, 206
BseBI CCWGG 1 cut(s) 116
BseDI CCNNGG 3 cut(s) 92, 115, 277
BseLI CCNNNNNNNGG 6 cut(s) 45, 70, 71, 85, 121, 206
BseMII CTCAG 2 cut(s) 297, 375
Bsh1236I CGCG 1 cut(s) 391
Bsh1285I CGRYCG 1 cut(s) 43
BshFI GGCC 2 cut(s) 78, 262
BsiEI CGRYCG 1 cut(s) 43
BsiHKCI CYCGRG 1 cut(s) 214
BsiSI CCGG 4 cut(s) 71, 242, 259, 277
BslI CCNNNNNNNGG 6 cut(s) 45, 70, 71, 85, 121, 206
BsmAI GTCTC 3 cut(s) 260, 273, 380
BsmBI CGTCTC 2 cut(s) 273, 380
BsnI GGCC 2 cut(s) 78, 262
Bso31I GGTCTC 1 cut(s) 260
BsoBI CYCGRG 1 cut(s) 214
Bsp1286I GDGCHC 2 cut(s) 129, 284
Bsp143I GATC 2 cut(s) 40, 203
BspACI CCGC 3 cut(s) 22, 171, 292
BspANI GGCC 2 cut(s) 78, 262
BspCNI CTCAG 2 cut(s) 296, 376
BspFNI CGCG 1 cut(s) 391
BspLI GGNNCC 2 cut(s) 90, 128
BspMI ACCTGC 1 cut(s) 286
BspTNI GGTCTC 1 cut(s) 260
BssECI CCNNGG 3 cut(s) 92, 115, 277
BssMI GATC 2 cut(s) 40, 203
Bst2UI CCWGG 1 cut(s) 116
Bst4CI ACNGT 3 cut(s) 35, 254, 267
Bst6I CTCTTC 2 cut(s) 368, 369
BstDEI CTNAG 2 cut(s) 283, 384
BstFNI CGCG 1 cut(s) 391
BstKTI GATC 2 cut(s) 43, 206
BstMAI GTCTC 3 cut(s) 260, 273, 380
BstMBI GATC 2 cut(s) 40, 203
BstMCI CGRYCG 1 cut(s) 43
BstMWI GCNNNNNNNGC 1 cut(s) 279
BstNI CCWGG 1 cut(s) 116
BstSCI CCNGG 3 cut(s) 70, 114, 276
BstUI CGCG 1 cut(s) 391
BstX2I RGATCY 1 cut(s) 203
BstYI RGATCY 1 cut(s) 203
BsuRI GGCC 2 cut(s) 78, 262
BveI ACCTGC 1 cut(s) 286
Cfr13I GGNCC 1 cut(s) 89
CseI GACGC 1 cut(s) 397
Csp6I GTAC 1 cut(s) 221
CviAII CATG 1 cut(s) 154
CviQI GTAC 1 cut(s) 221
DdeI CTNAG 2 cut(s) 283, 384
DpnI GATC 2 cut(s) 42, 205
DpnII GATC 2 cut(s) 40, 203
EaeI YGGCCR 2 cut(s) 76, 260
Eam1104I CTCTTC 2 cut(s) 368, 369
EarI CTCTTC 2 cut(s) 368, 369
Eco24I GRGCYC 2 cut(s) 129, 284
Eco31I GGTCTC 1 cut(s) 260
Eco47I GGWCC 1 cut(s) 89
Eco88I CYCGRG 1 cut(s) 214
EcoO109I RGGNCCY 1 cut(s) 89
EcoRII CCWGG 1 cut(s) 114
EcoT38I GRGCYC 2 cut(s) 129, 284
Esp3I CGTCTC 2 cut(s) 273, 380
FaeI CATG 1 cut(s) 157
FaiI YATR 2 cut(s) 155, 290
FatI CATG 1 cut(s) 153
FauI CCCGC 1 cut(s) 29
Fnu4HI GCNGC 1 cut(s) 293
FriOI GRGCYC 2 cut(s) 129, 284
Fsp4HI GCNGC 1 cut(s) 293
FspBI CTAG 4 cut(s) 183, 189, 201, 416
GluI GCNGC 1 cut(s) 293
HaeIII GGCC 2 cut(s) 78, 262
HapII CCGG 4 cut(s) 71, 242, 259, 277
HgaI GACGC 1 cut(s) 397
Hin1II CATG 1 cut(s) 157
HinfI GANTC 6 cut(s) 17, 67, 106, 210, 319, 419
HpaII CCGG 4 cut(s) 71, 242, 259, 277
Hpy188I TCNGA 8 cut(s) 16, 40, 48, 96, 286, 318, 324, 385
Hpy188III TCNNGA 3 cut(s) 207, 214, 423
Hpy99I CGWCG 1 cut(s) 48
HpyAV CCTTC 2 cut(s) 153, 357
HpyCH4III ACNGT 3 cut(s) 35, 254, 267
HpyCH4IV ACGT 1 cut(s) 167
HpyCH4V TGCA 2 cut(s) 239, 336
HpyF10VI GCNNNNNNNGC 1 cut(s) 279
HpyF3I CTNAG 2 cut(s) 283, 384
HpySE526I ACGT 1 cut(s) 167
Hsp92II CATG 1 cut(s) 157
Kzo9I GATC 2 cut(s) 40, 203
LmnI GCTCC 1 cut(s) 132
LpnPI CCDG 9 cut(s) 71, 84, 101, 128, 192, 255, 272, 281, 290
MaeI CTAG 4 cut(s) 183, 189, 201, 416
MaeII ACGT 1 cut(s) 167
MaeIII GTNAC 1 cut(s) 298
MalI GATC 2 cut(s) 42, 205
MboI GATC 2 cut(s) 40, 203
MboII GAAGA 3 cut(s) 138, 355, 386
MflI RGATCY 1 cut(s) 203
MhlI GDGCHC 2 cut(s) 129, 284
MluCI AATT 2 cut(s) 25, 337
MluI ACGCGT 1 cut(s) 389
MlyI GAGTC 2 cut(s) 100, 328
MmeI TCCRAC 2 cut(s) 26, 54
MnlI CCTC 6 cut(s) 102, 234, 240, 284, 364, 370
MseI TTAA 2 cut(s) 342, 410
MspI CCGG 4 cut(s) 71, 242, 259, 277
MspR9I CCNGG 3 cut(s) 72, 116, 278
MvaI CCWGG 1 cut(s) 116
MvnI CGCG 1 cut(s) 391
MwoI GCNNNNNNNGC 1 cut(s) 279
NciI CCSGG 2 cut(s) 72, 278
NdeII GATC 2 cut(s) 40, 203
NlaIII CATG 1 cut(s) 157
NlaIV GGNNCC 2 cut(s) 90, 128
PfeI GAWTC 4 cut(s) 17, 67, 210, 419
PflMI CCANNNNNTGG 1 cut(s) 121
PkrI GCNGC 1 cut(s) 294
Ple19I CGATCG 1 cut(s) 43
PleI GAGTC 2 cut(s) 100, 327
PpsI GAGTC 2 cut(s) 100, 327
PpuMI RGGWCCY 1 cut(s) 89
Psp5II RGGWCCY 1 cut(s) 89
Psp6I CCWGG 1 cut(s) 114
PspGI CCWGG 1 cut(s) 114
PspN4I GGNNCC 2 cut(s) 90, 128
PspPI GGNCC 1 cut(s) 89
PspPPI RGGWCCY 1 cut(s) 89
PsuI RGATCY 1 cut(s) 203
PvuI CGATCG 1 cut(s) 43
RsaI GTAC 1 cut(s) 222
RsaNI GTAC 1 cut(s) 221
SaqAI TTAA 2 cut(s) 342, 410
SatI GCNGC 1 cut(s) 293
Sau3AI GATC 2 cut(s) 40, 203
Sau96I GGNCC 1 cut(s) 89
SchI GAGTC 2 cut(s) 100, 328
ScrFI CCNGG 3 cut(s) 72, 116, 278
SduI GDGCHC 2 cut(s) 129, 284
SetI ASST 6 cut(s) 12, 60, 170, 226, 300, 381
SinI GGWCC 1 cut(s) 89
Sse9I AATT 2 cut(s) 25, 337
SsiI CCGC 3 cut(s) 22, 171, 292
SspMI CTAG 4 cut(s) 183, 189, 201, 416
StyD4I CCNGG 3 cut(s) 70, 114, 276
TaaI ACNGT 3 cut(s) 35, 254, 267
TaiI ACGT 1 cut(s) 170
TasI AATT 2 cut(s) 25, 337
TauI GCSGC 1 cut(s) 295
TfiI GAWTC 4 cut(s) 17, 67, 210, 419
Tru1I TTAA 2 cut(s) 342, 410
Tru9I TTAA 2 cut(s) 342, 410
TspDTI ATGAA 1 cut(s) 142
Van91I CCANNNNNTGG 1 cut(s) 121
VpaK11BI GGWCC 1 cut(s) 89
XspI CTAG 4 cut(s) 183, 189, 201, 416
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.