Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0008139

Physical Location & Seq

Genomic Coordinates Reverse (-)

23566893 .. 23569737

Gene Structure 2845 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG258800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCAAAGCTCTCTGATTCCCGCAATTCCAAGCGTTCCGATCGTCGGAACAAATACCTGAAGCCGAATCCGGCTGGCCGGAAATCGGGTCCTCGGAAATTGGCGACTCTATTCCAGGGTTTGGGGCTCCAAGACAAAACCCCTTCTTCTTTCATGTTGTCGCCTACGTCAGCAAAGAGCCCTAGCCCTAACCCTAGATCTGGAATCCCGAGCTCACCTCCTACCCCCAATGCACCGGCGAGGCACGGTCTCCGGCCACCGTCTCGCCTCCGGGGCTCGGATATGCGGCAGACATTTGATGACGCTGATGCCGACAAGGATGGGAGAATCAATAAACAAGAATGGAAGGCTTTTGTGCTTCGACATCCAGCCCTTCTGAAAAACATGACTCTTCCTTATTTGAAGTACGTTTCTCGACTTGTCTTTATATTTCCATTATTGTGCAACCTGCAGCATTCCAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005774 GO:0005886 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0009628 GO:0009651 GO:0009705 GO:0010959 GO:0012505 GO:0016020 GO:0031090 GO:0031410 GO:0031982 GO:0032879 GO:0042538 GO:0042592 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043266 GO:0043269 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048878 GO:0050789 GO:0050801 GO:0050896 GO:0051049 GO:0065007 GO:0065008 GO:0071944 GO:0097708 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04010 ko04020 ko04022 ko04114 ko04218 ko04310 ko04360 ko04370 ko04380 ko04650 ko04658 ko04659 ko04660 ko04662 ko04720 ko04724 ko04921 ko04922 ko04924 ko05010 ko05014 ko05031 ko05152 ko05166 ko05167 map04010 map04020 map04022 map04114 map04218 map04310 map04360 map04370 map04380 map04650 map04658 map04659 map04660 map04662 map04720 map04724 map04921 map04922 map04924 map05010 map05014 map05031 map05152 map05166 map05167

Pfam Domains

Protein Families

EF-hand_1 EF-hand_5 EF-hand_7

Protein Analysis

154

Amino Acids

17.19

Weight (kDa)

11.02

Isoelectric Point (pI)

69.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EF-hand_1	PF00036	95 - 119	1e-05	EF hand domain
EF-hand_5	PF13202	96 - 119	2.4e-07	EF hand

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008139)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g23480 FvH4_5g23480 FvH4_5g23480 FvH4_5g23480 FvH4_5g23480 FvH4_5g23480
rosa_chinensis	RchiOBHm_Chr7g0212721 RchiOBHm_Chr7g0212751 RchiOBHm_Chr7g0219121
rosa_laevigata	RLG00000002874
rosa_roxburghii	Rroxscaffold_3G00240340 Rroxscaffold_3G00240370 Rroxscaffold_3G00240490 Rroxscaffold_3G00246600 Rroxscaffold_7G00194690
rosa_rugosa	Rorug07G0136200
rosa_samantha	Rh7AG267700 Rh7BG258600 Rh7BG258800 Rh7BG263300 Rh7CG286800 Rh7CG291500 Rh7DG275800 Rh7DG276000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	456
AccB7I	CCANNNNNTGG	1 cut(s)	121
AciI	CCGC	2 cut(s)	22, 286
AcoI	YGGCCR	2 cut(s)	76, 254
AcuI	CTGAAG	1 cut(s)	80
AfaI	GTAC	1 cut(s)	407
AfiI	CCNNNNNNNGG	5 cut(s)	45, 85, 121, 200, 277
AgsI	TTSAA	1 cut(s)	403
AjnI	CCWGG	1 cut(s)	114
AluBI	AGCT	2 cut(s)	10, 213
AluI	AGCT	2 cut(s)	10, 213
Alw21I	GWGCWC	1 cut(s)	215
Alw26I	GTCTC	2 cut(s)	254, 267
Ama87I	CYCGRG	1 cut(s)	208
AoxI	GGCC	2 cut(s)	76, 254
ApeKI	GCWGC	1 cut(s)	451
AspS9I	GGNCC	1 cut(s)	89
AsuC2I	CCSGG	1 cut(s)	272
AsuHPI	GGTGA	1 cut(s)	207
AvaI	CYCGRG	1 cut(s)	208
AvaII	GGWCC	1 cut(s)	89
BanII	GRGCYC	4 cut(s)	129, 182, 215, 278
Bbv12I	GWGCWC	1 cut(s)	215
BccI	CCATC	1 cut(s)	314
BciT130I	CCWGG	1 cut(s)	116
BcnI	CCSGG	1 cut(s)	272
BcoDI	GTCTC	2 cut(s)	254, 267
BfaI	CTAG	2 cut(s)	183, 195
BfmI	CTRYAG	1 cut(s)	449
BfuAI	ACCTGC	1 cut(s)	456
BglI	GCCNNNNNGGC	1 cut(s)	273
BglII	AGATCT	1 cut(s)	197
BisI	GCNGC	2 cut(s)	287, 452
BlsI	GCNGC	2 cut(s)	288, 453
Bme1390I	CCNGG	2 cut(s)	116, 272
Bme18I	GGWCC	1 cut(s)	89
BmeT110I	CYCGRG	1 cut(s)	208
BmgT120I	GGNCC	1 cut(s)	89
BmiI	GGNNCC	2 cut(s)	90, 128
BmrFI	CCNGG	2 cut(s)	116, 272
BmsI	GCATC	1 cut(s)	298
BplI	GAGNNNNNCTC	2 cut(s)	202, 234
BpuMI	CCSGG	1 cut(s)	272
BsaI	GGTCTC	1 cut(s)	254
BsaJI	CCNNGG	3 cut(s)	92, 115, 271
Bsc4I	CCNNNNNNNGG	5 cut(s)	45, 85, 121, 200, 277
Bse118I	RCCGGY	1 cut(s)	235
Bse1I	ACTGG	1 cut(s)	459
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	3 cut(s)	92, 115, 271
BseGI	GGATG	2 cut(s)	325, 364
BseLI	CCNNNNNNNGG	5 cut(s)	45, 85, 121, 200, 277
BseNI	ACTGG	1 cut(s)	459
Bsh1285I	CGRYCG	1 cut(s)	43
BshFI	GGCC	2 cut(s)	78, 256
BsiEI	CGRYCG	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	215
BsiHKCI	CYCGRG	1 cut(s)	208
BsiSI	CCGG	5 cut(s)	71, 79, 236, 253, 271
BslI	CCNNNNNNNGG	5 cut(s)	45, 85, 121, 200, 277
BsmAI	GTCTC	2 cut(s)	254, 267
BsmBI	CGTCTC	1 cut(s)	267
BsmI	GAATGC	1 cut(s)	454
BsnI	GGCC	2 cut(s)	78, 256
Bso31I	GGTCTC	1 cut(s)	254
BsoBI	CYCGRG	1 cut(s)	208
Bsp1286I	GDGCHC	4 cut(s)	129, 182, 215, 278
Bsp143I	GATC	2 cut(s)	40, 197
BspACI	CCGC	2 cut(s)	22, 286
BspANI	GGCC	2 cut(s)	78, 256
BspLI	GGNNCC	2 cut(s)	90, 128
BspMAI	CTGCAG	1 cut(s)	453
BspMI	ACCTGC	1 cut(s)	456
BspTNI	GGTCTC	1 cut(s)	254
BsrFI	RCCGGY	1 cut(s)	235
BsrI	ACTGG	1 cut(s)	459
BssAI	RCCGGY	1 cut(s)	235
BssECI	CCNNGG	3 cut(s)	92, 115, 271
BssMI	GATC	2 cut(s)	40, 197
Bst2UI	CCWGG	1 cut(s)	116
Bst4CI	ACNGT	2 cut(s)	248, 261
Bst6I	CTCTTC	1 cut(s)	396
BstC8I	GCNNGC	1 cut(s)	76
BstF5I	GGATG	2 cut(s)	325, 364
BstKTI	GATC	2 cut(s)	43, 200
BstMAI	GTCTC	2 cut(s)	254, 267
BstMBI	GATC	2 cut(s)	40, 197
BstMCI	CGRYCG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	1 cut(s)	273
BstNI	CCWGG	1 cut(s)	116
BstSCI	CCNGG	2 cut(s)	114, 270
BstSFI	CTRYAG	1 cut(s)	449
BstX2I	RGATCY	1 cut(s)	197
BstYI	RGATCY	1 cut(s)	197
BsuRI	GGCC	2 cut(s)	78, 256
BtsCI	GGATG	2 cut(s)	325, 364
BveI	ACCTGC	1 cut(s)	456
Cac8I	GCNNGC	1 cut(s)	76
Cfr10I	RCCGGY	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	89
CseI	GACGC	1 cut(s)	311
Csp6I	GTAC	1 cut(s)	406
CviAII	CATG	2 cut(s)	154, 385
CviQI	GTAC	1 cut(s)	406
DpnI	GATC	2 cut(s)	42, 199
DpnII	GATC	2 cut(s)	40, 197
EaeI	YGGCCR	2 cut(s)	76, 254
Eam1104I	CTCTTC	1 cut(s)	396
EarI	CTCTTC	1 cut(s)	396
Ecl136II	GAGCTC	1 cut(s)	213
Eco24I	GRGCYC	4 cut(s)	129, 182, 215, 278
Eco31I	GGTCTC	1 cut(s)	254
Eco47I	GGWCC	1 cut(s)	89
Eco53kI	GAGCTC	1 cut(s)	213
Eco57I	CTGAAG	1 cut(s)	80
Eco88I	CYCGRG	1 cut(s)	208
EcoICRI	GAGCTC	1 cut(s)	213
EcoO109I	RGGNCCY	1 cut(s)	89
EcoRII	CCWGG	1 cut(s)	114
EcoT38I	GRGCYC	4 cut(s)	129, 182, 215, 278
Esp3I	CGTCTC	1 cut(s)	267
FaeI	CATG	2 cut(s)	157, 388
FaiI	YATR	4 cut(s)	155, 284, 386, 428
FatI	CATG	2 cut(s)	153, 384
FauI	CCCGC	1 cut(s)	29
Fnu4HI	GCNGC	2 cut(s)	287, 452
FokI	GGATG	2 cut(s)	332, 351
FriOI	GRGCYC	4 cut(s)	129, 182, 215, 278
Fsp4HI	GCNGC	2 cut(s)	287, 452
FspBI	CTAG	2 cut(s)	183, 195
GluI	GCNGC	2 cut(s)	287, 452
HaeIII	GGCC	2 cut(s)	78, 256
HapII	CCGG	5 cut(s)	71, 79, 236, 253, 271
HgaI	GACGC	1 cut(s)	311
Hin1II	CATG	2 cut(s)	157, 388
HinfI	GANTC	6 cut(s)	17, 67, 106, 204, 327, 388
HpaII	CCGG	5 cut(s)	71, 79, 236, 253, 271
HphI	GGTGA	1 cut(s)	207
Hpy188I	TCNGA	6 cut(s)	16, 40, 48, 96, 280, 378
Hpy188III	TCNNGA	3 cut(s)	201, 208, 414
Hpy99I	CGWCG	1 cut(s)	48
HpyAV	CCTTC	3 cut(s)	153, 340, 383
HpyCH4III	ACNGT	2 cut(s)	248, 261
HpyCH4IV	ACGT	2 cut(s)	167, 408
HpyCH4V	TGCA	3 cut(s)	233, 444, 451
HpyF10VI	GCNNNNNNNGC	1 cut(s)	273
HpySE526I	ACGT	2 cut(s)	167, 408
Hsp92II	CATG	2 cut(s)	157, 388
Kzo9I	GATC	2 cut(s)	40, 197
LmnI	GCTCC	1 cut(s)	132
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	2 cut(s)	183, 195
MaeII	ACGT	2 cut(s)	167, 408
MalI	GATC	2 cut(s)	42, 199
MboI	GATC	2 cut(s)	40, 197
MboII	GAAGA	2 cut(s)	138, 383
MflI	RGATCY	1 cut(s)	197
MhlI	GDGCHC	4 cut(s)	129, 182, 215, 278
MluCI	AATT	2 cut(s)	25, 98
MlyI	GAGTC	2 cut(s)	100, 382
MmeI	TCCRAC	1 cut(s)	26
MnlI	CCTC	4 cut(s)	102, 228, 234, 278
MseI	TTAA	1 cut(s)	463
MslI	CAYNNNNRTG	1 cut(s)	439
MspI	CCGG	5 cut(s)	71, 79, 236, 253, 271
MspR9I	CCNGG	2 cut(s)	116, 272
Mva1269I	GAATGC	1 cut(s)	454
MvaI	CCWGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	1 cut(s)	273
NciI	CCSGG	1 cut(s)	272
NdeII	GATC	2 cut(s)	40, 197
NlaIII	CATG	2 cut(s)	157, 388
NlaIV	GGNNCC	2 cut(s)	90, 128
PcsI	WCGNNNNNNNCGW	1 cut(s)	309
PctI	GAATGC	1 cut(s)	454
PfeI	GAWTC	4 cut(s)	17, 67, 204, 327
PflMI	CCANNNNNTGG	1 cut(s)	121
PkrI	GCNGC	2 cut(s)	288, 453
Ple19I	CGATCG	1 cut(s)	43
PleI	GAGTC	2 cut(s)	100, 382
PpsI	GAGTC	2 cut(s)	100, 382
PpuMI	RGGWCCY	1 cut(s)	89
Psp124BI	GAGCTC	1 cut(s)	215
Psp5II	RGGWCCY	1 cut(s)	89
Psp6I	CCWGG	1 cut(s)	114
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	2 cut(s)	90, 128
PspPI	GGNCC	1 cut(s)	89
PspPPI	RGGWCCY	1 cut(s)	89
PstI	CTGCAG	1 cut(s)	453
PsuI	RGATCY	1 cut(s)	197
PvuI	CGATCG	1 cut(s)	43
RsaI	GTAC	1 cut(s)	407
RsaNI	GTAC	1 cut(s)	406
RseI	CAYNNNNRTG	1 cut(s)	439
SacI	GAGCTC	1 cut(s)	215
SaqAI	TTAA	1 cut(s)	463
SatI	GCNGC	2 cut(s)	287, 452
Sau3AI	GATC	2 cut(s)	40, 197
Sau96I	GGNCC	1 cut(s)	89
SchI	GAGTC	2 cut(s)	100, 382
ScrFI	CCNGG	2 cut(s)	116, 272
SduI	GDGCHC	4 cut(s)	129, 182, 215, 278
SetI	ASST	7 cut(s)	12, 60, 170, 215, 220, 411, 450
SfaNI	GCATC	1 cut(s)	298
SfcI	CTRYAG	1 cut(s)	449
SgrAI	CRCCGGYG	1 cut(s)	235
SinI	GGWCC	1 cut(s)	89
SmiMI	CAYNNNNRTG	1 cut(s)	439
Sse9I	AATT	2 cut(s)	25, 98
SsiI	CCGC	2 cut(s)	22, 286
SspMI	CTAG	2 cut(s)	183, 195
SstI	GAGCTC	1 cut(s)	215
StyD4I	CCNGG	2 cut(s)	114, 270
TaaI	ACNGT	2 cut(s)	248, 261
TaiI	ACGT	2 cut(s)	170, 411
TaqI	TCGA	2 cut(s)	361, 415
TasI	AATT	2 cut(s)	25, 98
TauI	GCSGC	1 cut(s)	289
TfiI	GAWTC	4 cut(s)	17, 67, 204, 327
Tru1I	TTAA	1 cut(s)	463
Tru9I	TTAA	1 cut(s)	463
TseI	GCWGC	1 cut(s)	451
TspDTI	ATGAA	1 cut(s)	142
Van91I	CCANNNNNTGG	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	89
XspI	CTAG	2 cut(s)	183, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.