FvH4_5g23550

4-coumarate--CoA ligase-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
14896409 .. 14899950
3542 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g23550.t1

Sequence Viewer

Length: 1740 bp
ATGCTCAACACCCATTTCTCTTTGTTTCCTTCTGCAATGGCTAAAACCTCAAGCAACAGCTTAAACCCTGAAAAACATAACTCTTTGGCTACCCAACAACAACAGCAACAACAACATCCATGGTGGTTTTCACCAGAAACAGGAATCTACAGCAGCAAACACCCTAATGTTAACCTCCCCAGTGACCCTTTTCTTGATGTTGTCTCATTCATTTTCTCACACAAGCACAGTGGGGTTTCAGCTTTGATTGATTCGTCATCTGGGTTTTCAATATCTTACTCAAAGCTCTATTCTTTGGTCGAGTCCATGGCCTCTGGCCTCATCAAAATGGGTGTTTCACAAGGTGATGTTGTTCTGCTTCTTTTGCCTAATTCTGTCTACTATCCCATTGTTTTCTTGGGTGTTTTGTATATTGGTGCTGTTGTTACAACCATGAACCCTCTAAGCAGTGTGGTAGAGATTAAGAAACAGATTAAGGATTGCAATGCATGTTTTGGTTTCACAGGATATGAAAATGTTGATAAGTTGCAAGCATTGAGTATTCCTGCAATTGCAGTTCCAGGAAATGTAGTATTGGATTCAAAGAAAGAAATGTTTTCAGTTTTTTATCAGCTTGTTGATAGTGAAGTTGATTTGGCTCTAAGGCCAGTGATCAAGCAGCAAGACACTGCTGCGATATTGTATTCATCCGGGACTACTGGTGTGAGTAAAGGTGTTTTGATAACACATGGGAATTTGATAGCTACAGTGGAGCTTTTTGTGCGGTTTGAGGCTTCACAATATGAGTATTCAAGCTTGAAGAATGTGTATTTATCTGTTCTGCCATTGTTTCATATATACGGGTTGGCACTTATGGTGGTTGGATTATTGTCATTGGGGTCGAGCATTGTCATAATGAAGAAATTTGATGTTAATGAGGTGGTCTCAGCAATTGATAGATATAAAGTGACACATTTCCCAGTTGTTCCACCAATATTAACAGCATTAACAAAAATAGCACAGGATGTTGGGGCACAAAGTCTGCAGAGTTTAAAGCAGGTTTCTTGTGGAGCAGCTCCAACGAGCATGAAACTCATAGAGGAGTTAGTTCAGACCCTTCCTCATGTTGATTTTATTCAGGGATATGGCATGACTGAGACGACTGCAGTAGGAACTCGTGGCTTCAATACTGAAAAGATCAGGAAATATTCTTCAATTGGACTTTTAGCTCCAAACATGCAAGCTAAAGTGGTAGATTGGAATACGGGATCCTTTTTGCCTCCAGCTAGTATCGGTGAACTATGGTTACGAGGACCTTCAATTATGAGAGGTTACTTGAATAATGCAAGGGCAACTATGTCAACAATTGATAATGATGGTTGGCTGCATACCGGGGATATCAGTTATTTTGATGAGGACGGATACTTGTATATATGTGATCGCATAAAAGAGATTATCAAATACAAGGGATTTCAGATTGCTCCTGCAGATTTAGAAGCTGTGTTGATTTCGCATCCTGAGATACTAGATGTTGGAGTTACAGGTGCTACCGATGAAGAATGTGGAGAGGTACCAGTGGCATTTGTGGTTAGGAAGCATGACAGTGAACTTTCTCAGGAAGATATCATGGATTACGTTGCCCGACAGGTTTCTCCACACAAGAAGGTCAGAAAGGTGGTGTTTACACATTCAATACCAAGATCTGCAGCAGGGAAGATCCTGCGAAGGGAGCTCAGAAATCTCTTGGCTTCTAGACTATAG

Protein Analysis

580

Amino Acids

63.64

Weight (kDa)

6.44

Isoelectric Point (pI)

39.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMP-binding PF00501 75 - 439 8.5e-87 AMP-binding enzyme
AMP-binding_C PF13193 491 - 565 6.2e-17 AMP-binding enzyme C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1027
Acc65I GGTACC 1 cut(s) 1549
AccB1I GGYRCC 1 cut(s) 1549
AccI GTMKAC 1 cut(s) 378
AciI CCGC 1 cut(s) 763
AclWI GGATC 3 cut(s) 1242, 1255, 1690
AcsI RAATTY 2 cut(s) 733, 902
AdeI CACNNNGTG 1 cut(s) 344
AfaI GTAC 1 cut(s) 1551
AfiI CCNNNNNNNGG 2 cut(s) 140, 1705
AgsI TTSAA 9 cut(s) 270, 582, 792, 799, 1165, 1194, 1299, 1318, 1671
AjnI CCWGG 1 cut(s) 559
Alw21I GWGCWC 1 cut(s) 1713
Alw26I GTCTC 3 cut(s) 208, 928, 1130
AlwI GGATC 3 cut(s) 1242, 1255, 1690
AoxI GGCC 3 cut(s) 309, 316, 644
ApeKI GCWGC 6 cut(s) 153, 658, 671, 1052, 1363, 1685
ApoI RAATTY 2 cut(s) 733, 902
Asp718I GGTACC 1 cut(s) 1549
AspS9I GGNCC 1 cut(s) 1292
AsuC2I CCSGG 2 cut(s) 691, 1372
AsuHPI GGTGA 3 cut(s) 123, 356, 1286
AvaII GGWCC 1 cut(s) 1292
BaeGI GKGCMC 1 cut(s) 1015
BamHI GGATCC 1 cut(s) 1247
BanI GGYRCC 1 cut(s) 1549
BanII GRGCYC 1 cut(s) 1713
BauI CACGAG 1 cut(s) 1155
Bbv12I GWGCWC 1 cut(s) 1713
BbvI GCAGC 6 cut(s) 165, 658, 670, 1064, 1350, 1697
BccI CCATC 1 cut(s) 1349
BciT130I CCWGG 1 cut(s) 561
BciVI GTATCC 1 cut(s) 1394
BclI TGATCA 1 cut(s) 651
BcnI CCSGG 2 cut(s) 691, 1372
BcoDI GTCTC 3 cut(s) 208, 928, 1130
BfaI CTAG 3 cut(s) 1266, 1505, 1731
BfmI CTRYAG 7 cut(s) 148, 744, 1022, 1143, 1464, 1683, 1736
BfuAI ACCTGC 1 cut(s) 1027
BfuI GTATCC 1 cut(s) 1394
BglII AGATCT 1 cut(s) 1679
BisI GCNGC 6 cut(s) 154, 659, 672, 1053, 1364, 1686
BlsI GCNGC 6 cut(s) 155, 660, 673, 1054, 1365, 1687
Bme1390I CCNGG 3 cut(s) 561, 691, 1372
Bme18I GGWCC 1 cut(s) 1292
BmgT120I GGNCC 1 cut(s) 1292
BmiI GGNNCC 2 cut(s) 1249, 1551
BmrFI CCNGG 3 cut(s) 561, 691, 1372
BmrI ACTGGG 2 cut(s) 174, 953
BmsI GCATC 1 cut(s) 1501
BmuI ACTGGG 2 cut(s) 174, 953
BplI GAGNNNNNCTC 2 cut(s) 908, 940
BpmI CTGGAG 1 cut(s) 1245
BpuEI CTTGAG 1 cut(s) 34
BpuMI CCSGG 2 cut(s) 691, 1372
BsaI GGTCTC 1 cut(s) 928
BsaJI CCNNGG 3 cut(s) 119, 306, 1371
Bsc4I CCNNNNNNNGG 2 cut(s) 140, 1705
Bse1I ACTGG 5 cut(s) 180, 647, 703, 959, 1553
Bse3DI GCAATG 2 cut(s) 42, 490
BseBI CCWGG 1 cut(s) 561
BseDI CCNNGG 3 cut(s) 119, 306, 1371
BseGI GGATG 4 cut(s) 115, 686, 1009, 1492
BseLI CCNNNNNNNGG 2 cut(s) 140, 1705
BseMI GCAATG 2 cut(s) 42, 490
BseMII CTCAG 5 cut(s) 939, 1125, 1488, 1607, 1726
BseNI ACTGG 5 cut(s) 180, 647, 703, 959, 1553
BseRI GAGGAG 1 cut(s) 1094
BseSI GKGCMC 1 cut(s) 1015
BseXI GCAGC 6 cut(s) 165, 658, 670, 1064, 1350, 1697
BshFI GGCC 3 cut(s) 311, 318, 646
BshNI GGYRCC 1 cut(s) 1549
BsiHKAI GWGCWC 1 cut(s) 1713
BsiSI CCGG 2 cut(s) 690, 1371
BslFI GGGAC 1 cut(s) 706
BslI CCNNNNNNNGG 2 cut(s) 140, 1705
BsmAI GTCTC 3 cut(s) 208, 928, 1130
BsmBI CGTCTC 1 cut(s) 1130
BsmFI GGGAC 1 cut(s) 706
BsnI GGCC 3 cut(s) 311, 318, 646
Bso31I GGTCTC 1 cut(s) 928
Bsp1286I GDGCHC 2 cut(s) 1015, 1713
Bsp143I GATC 6 cut(s) 651, 1176, 1247, 1417, 1679, 1695
Bsp19I CCATGG 2 cut(s) 119, 306
BspACI CCGC 1 cut(s) 763
BspANI GGCC 3 cut(s) 311, 318, 646
BspCNI CTCAG 5 cut(s) 938, 1126, 1489, 1606, 1725
BspLI GGNNCC 2 cut(s) 1249, 1551
BspMAI CTGCAG 4 cut(s) 1026, 1147, 1468, 1687
BspMI ACCTGC 1 cut(s) 1027
BspPI GGATC 3 cut(s) 1242, 1255, 1690
BspT107I GGYRCC 1 cut(s) 1549
BspTNI GGTCTC 1 cut(s) 928
BsrDI GCAATG 2 cut(s) 42, 490
BsrI ACTGG 5 cut(s) 180, 647, 703, 959, 1553
BssECI CCNNGG 3 cut(s) 119, 306, 1371
BssMI GATC 6 cut(s) 651, 1176, 1247, 1417, 1679, 1695
BssSI CACGAG 1 cut(s) 1155
BssT1I CCWWGG 2 cut(s) 119, 306
Bst2BI CACGAG 1 cut(s) 1155
Bst2UI CCWGG 1 cut(s) 561
Bst4CI ACNGT 3 cut(s) 230, 748, 1583
BstC8I GCNNGC 2 cut(s) 531, 1221
BstDEI CTNAG 7 cut(s) 443, 641, 925, 1134, 1497, 1593, 1712
BstDSI CCRYGG 2 cut(s) 119, 306
BstF5I GGATG 4 cut(s) 115, 686, 1009, 1492
BstKTI GATC 6 cut(s) 654, 1179, 1250, 1420, 1682, 1698
BstMAI GTCTC 3 cut(s) 208, 928, 1130
BstMBI GATC 6 cut(s) 651, 1176, 1247, 1417, 1679, 1695
BstMWI GCNNNNNNNGC 3 cut(s) 364, 760, 1708
BstNI CCWGG 1 cut(s) 561
BstNSI RCATGY 2 cut(s) 492, 1219
BstSCI CCNGG 3 cut(s) 559, 689, 1370
BstSFI CTRYAG 7 cut(s) 148, 744, 1022, 1143, 1464, 1683, 1736
BstSLI GKGCMC 1 cut(s) 1015
BstV1I GCAGC 6 cut(s) 165, 658, 670, 1064, 1350, 1697
BstX2I RGATCY 3 cut(s) 1247, 1679, 1695
BstYI RGATCY 3 cut(s) 1247, 1679, 1695
BsuI GTATCC 1 cut(s) 1394
BsuRI GGCC 3 cut(s) 311, 318, 646
BtgI CCRYGG 2 cut(s) 119, 306
BtsCI GGATG 4 cut(s) 115, 686, 1009, 1492
BtsI GCAGTG 2 cut(s) 454, 666
BtsIMutI CAGTG 8 cut(s) 187, 235, 454, 654, 666, 753, 1560, 1588
BveI ACCTGC 1 cut(s) 1027
Cac8I GCNNGC 2 cut(s) 531, 1221
Cfr13I GGNCC 1 cut(s) 1292
Csp6I GTAC 1 cut(s) 1550
CspCI CAANNNNNGTGG 2 cut(s) 211, 246
CviQI GTAC 1 cut(s) 1550
DdeI CTNAG 7 cut(s) 443, 641, 925, 1134, 1497, 1593, 1712
DpnI GATC 6 cut(s) 653, 1178, 1249, 1419, 1681, 1697
DpnII GATC 6 cut(s) 651, 1176, 1247, 1417, 1679, 1695
DraI TTTAAA 1 cut(s) 1032
DraIII CACNNNGTG 1 cut(s) 344
Ecl136II GAGCTC 1 cut(s) 1711
Eco130I CCWWGG 2 cut(s) 119, 306
Eco24I GRGCYC 1 cut(s) 1713
Eco31I GGTCTC 1 cut(s) 928
Eco32I GATATC 2 cut(s) 1378, 1603
Eco47I GGWCC 1 cut(s) 1292
Eco53kI GAGCTC 1 cut(s) 1711
EcoICRI GAGCTC 1 cut(s) 1711
EcoO109I RGGNCCY 1 cut(s) 1292
EcoRII CCWGG 1 cut(s) 559
EcoRV GATATC 2 cut(s) 1378, 1603
EcoT14I CCWWGG 2 cut(s) 119, 306
EcoT22I ATGCAT 1 cut(s) 490
EcoT38I GRGCYC 1 cut(s) 1713
ErhI CCWWGG 2 cut(s) 119, 306
Esp3I CGTCTC 1 cut(s) 1130
FaqI GGGAC 1 cut(s) 706
FbaI TGATCA 1 cut(s) 651
FblI GTMKAC 1 cut(s) 378
Fnu4HI GCNGC 6 cut(s) 154, 659, 672, 1053, 1364, 1686
FokI GGATG 4 cut(s) 102, 673, 1016, 1479
FriOI GRGCYC 1 cut(s) 1713
Fsp4HI GCNGC 6 cut(s) 154, 659, 672, 1053, 1364, 1686
FspBI CTAG 3 cut(s) 1266, 1505, 1731
GluI GCNGC 6 cut(s) 154, 659, 672, 1053, 1364, 1686
GsuI CTGGAG 1 cut(s) 1245
HaeIII GGCC 3 cut(s) 311, 318, 646
HapII CCGG 2 cut(s) 690, 1371
HincII GTYRAC 2 cut(s) 172, 1341
HindII GTYRAC 2 cut(s) 172, 1341
HindIII AAGCTT 1 cut(s) 793
HinfI GANTC 4 cut(s) 144, 251, 302, 578
HpaI GTTAAC 1 cut(s) 172
HpaII CCGG 2 cut(s) 690, 1371
HphI GGTGA 3 cut(s) 123, 356, 1286
Hpy166II GTNNAC 6 cut(s) 172, 379, 1277, 1341, 1586, 1662
Hpy188I TCNGA 4 cut(s) 1092, 1455, 1649, 1715
Hpy188III TCNNGA 5 cut(s) 194, 1180, 1496, 1595, 1731
Hpy8I GTNNAC 6 cut(s) 172, 379, 1277, 1341, 1586, 1662
HpyAV CCTTC 5 cut(s) 39, 1106, 1305, 1636, 1698
HpyCH4III ACNGT 3 cut(s) 230, 748, 1583
HpyCH4IV ACGT 1 cut(s) 1614
HpyF10VI GCNNNNNNNGC 3 cut(s) 364, 760, 1708
HpyF3I CTNAG 7 cut(s) 443, 641, 925, 1134, 1497, 1593, 1712
HpySE526I ACGT 1 cut(s) 1614
KpnI GGTACC 1 cut(s) 1553
Ksp22I TGATCA 1 cut(s) 651
KspAI GTTAAC 1 cut(s) 172
Kzo9I GATC 6 cut(s) 651, 1176, 1247, 1417, 1679, 1695
LmnI GCTCC 6 cut(s) 751, 1049, 1060, 1213, 1465, 1708
Lsp1109I GCAGC 6 cut(s) 165, 658, 670, 1064, 1350, 1697
LweI GCATC 1 cut(s) 1501
MaeI CTAG 3 cut(s) 1266, 1505, 1731
MaeII ACGT 1 cut(s) 1614
MaeIII GTNAC 6 cut(s) 182, 424, 946, 1284, 1310, 1516
MalI GATC 6 cut(s) 653, 1178, 1249, 1419, 1681, 1697
MboI GATC 6 cut(s) 651, 1176, 1247, 1417, 1679, 1695
MboII GAAGA 6 cut(s) 811, 910, 1182, 1547, 1610, 1705
MfeI CAATTG 4 cut(s) 549, 930, 1194, 1344
MflI RGATCY 3 cut(s) 1247, 1679, 1695
MhlI GDGCHC 2 cut(s) 1015, 1713
MluCI AATT 8 cut(s) 370, 549, 733, 902, 930, 1194, 1299, 1344
MlyI GAGTC 1 cut(s) 311
MmeI TCCRAC 3 cut(s) 841, 1082, 1492
Mph1103I ATGCAT 1 cut(s) 490
MseI TTAA 8 cut(s) 62, 171, 462, 474, 912, 977, 986, 1031
MslI CAYNNNNRTG 3 cut(s) 165, 326, 1581
MspI CCGG 2 cut(s) 690, 1371
MspR9I CCNGG 3 cut(s) 561, 691, 1372
MunI CAATTG 4 cut(s) 549, 930, 1194, 1344
MvaI CCWGG 1 cut(s) 561
MwoI GCNNNNNNNGC 3 cut(s) 364, 760, 1708
NciI CCSGG 2 cut(s) 691, 1372
NcoI CCATGG 2 cut(s) 119, 306
NdeII GATC 6 cut(s) 651, 1176, 1247, 1417, 1679, 1695
NlaIV GGNNCC 2 cut(s) 1249, 1551
NmuCI GTSAC 2 cut(s) 182, 946
NsiI ATGCAT 1 cut(s) 490
NspI RCATGY 2 cut(s) 492, 1219
PfeI GAWTC 3 cut(s) 144, 251, 578
PfoI TCCNGGA 2 cut(s) 559, 689
PkrI GCNGC 6 cut(s) 155, 660, 673, 1054, 1365, 1687
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
PpuMI RGGWCCY 1 cut(s) 1292
Psp124BI GAGCTC 1 cut(s) 1713
Psp5II RGGWCCY 1 cut(s) 1292
Psp6I CCWGG 1 cut(s) 559
PspGI CCWGG 1 cut(s) 559
PspN4I GGNNCC 2 cut(s) 1249, 1551
PspPI GGNCC 1 cut(s) 1292
PspPPI RGGWCCY 1 cut(s) 1292
PsrI GAACNNNNNNTAC 2 cut(s) 1269, 1301
PstI CTGCAG 4 cut(s) 1026, 1147, 1468, 1687
PsuI RGATCY 3 cut(s) 1247, 1679, 1695
RsaI GTAC 1 cut(s) 1551
RsaNI GTAC 1 cut(s) 1550
RseI CAYNNNNRTG 3 cut(s) 165, 326, 1581
SacI GAGCTC 1 cut(s) 1713
SaqAI TTAA 8 cut(s) 62, 171, 462, 474, 912, 977, 986, 1031
SatI GCNGC 6 cut(s) 154, 659, 672, 1053, 1364, 1686
Sau3AI GATC 6 cut(s) 651, 1176, 1247, 1417, 1679, 1695
Sau96I GGNCC 1 cut(s) 1292
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 3 cut(s) 561, 691, 1372
SduI GDGCHC 2 cut(s) 1015, 1713
SfaNI GCATC 1 cut(s) 1501
SfcI CTRYAG 7 cut(s) 148, 744, 1022, 1143, 1464, 1683, 1736
SinI GGWCC 1 cut(s) 1292
SmiMI CAYNNNNRTG 3 cut(s) 165, 326, 1581
SmlI CTYRAG 1 cut(s) 49
SmoI CTYRAG 1 cut(s) 49
Sse9I AATT 8 cut(s) 370, 549, 733, 902, 930, 1194, 1299, 1344
SsiI CCGC 1 cut(s) 763
SspI AATATT 2 cut(s) 975, 1187
SspMI CTAG 3 cut(s) 1266, 1505, 1731
SstI GAGCTC 1 cut(s) 1713
StyD4I CCNGG 3 cut(s) 559, 689, 1370
StyI CCWWGG 2 cut(s) 119, 306
TaaI ACNGT 3 cut(s) 230, 748, 1583
TaiI ACGT 1 cut(s) 1617
TaqI TCGA 2 cut(s) 300, 881
TasI AATT 8 cut(s) 370, 549, 733, 902, 930, 1194, 1299, 1344
TfiI GAWTC 3 cut(s) 144, 251, 578
Tru1I TTAA 8 cut(s) 62, 171, 462, 474, 912, 977, 986, 1031
Tru9I TTAA 8 cut(s) 62, 171, 462, 474, 912, 977, 986, 1031
TscAI CASTG 8 cut(s) 187, 235, 454, 654, 673, 753, 1560, 1588
TseFI GTSAC 2 cut(s) 182, 946
TseI GCWGC 6 cut(s) 153, 658, 671, 1052, 1363, 1685
Tsp45I GTSAC 2 cut(s) 182, 946
TspDTI ATGAA 8 cut(s) 199, 449, 525, 675, 821, 911, 1082, 1548
TspGWI ACGGA 1 cut(s) 1413
TspRI CASTG 8 cut(s) 187, 235, 454, 654, 673, 753, 1560, 1588
VpaK11BI GGWCC 1 cut(s) 1292
XapI RAATTY 2 cut(s) 733, 902
XbaI TCTAGA 1 cut(s) 1730
XceI RCATGY 2 cut(s) 492, 1219
XcmI CCANNNNNNNNNTGG 1 cut(s) 394
XmiI GTMKAC 1 cut(s) 378
XspI CTAG 3 cut(s) 1266, 1505, 1731
Zsp2I ATGCAT 1 cut(s) 490
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.