Rh7CG287700

4-coumarate--CoA ligase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
Physical Location & Seq
Reverse (-)
29282879 .. 29286282
3404 bp
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UTR
Exon/CDS
Intron
Rh7CG287700.1

Sequence Viewer

Length: 1695 bp
ATGGCTAAAACCTCAAGCAACAGCTTAAACCCTGAAAAGCATGAATCTTTGGCTACCCAACAACAACAACATCCTTGGTGGTTTTCACCAGATACAGGAATCTACCACAGCAAACACCCTAATGTGAATCTCCCCACAGACCCTTTTCTTGATGTTGTCTCATTCATTTTCTCACACAAGCACACTGGGGTTTCAGCTTTGATCGATTCCTCATCTGGGTTTTCATTATCTTACTCAAAGCTCTATTCTTTGACCAAGTCCATGGCCTCTGGCCTCAACAAAATGGGTGTTTCACAAGGTGATGTTGTTCTGCTTCTTTTGCCTAATTCTGTTTACTATCCCATTGTTTTCTTGGGTGTTTTGTATATTGGTGCTGTTGTTACAACCATGAACCCTCTAAGCAGTGTGGTAGAGATCAAGAAACAGATTAAGGATTGCAATGCATGTTTTGCTTTTACGGGATATGAAAATGTTGATAAATTGCAAGCATTGGGTATTCCTGCAATTGCAGTTCCAGGAAATGTAGTGTTGGATTCAAATAAAGAACTGTTTTCAGTTTTTTATGAGCTTGTTAATAGTGAATTTGATCTGGCTTCAAGGCCAGTGATCATGCAGCAAGATACTGCGGCGATATTGTATTCGTCAGGGACTACTGGTGTGAGTAAAGGTGTTTTGCTAACACATGGGAATCTCATAGCTACAGTTGAGCTTTTTGTGCGGTTTGAGGCTTCACAATATGAGTATTCGAGCTTGAAGAATGTGTATTTATCTGTTCTGCCATTGTTTCACATATACGGGTTGGCACTTATAGTGGTTGGATTATTGTCTTTGGGGTCGAGCATTGTTATAATGAAGAAATTTGATATTAATGAGGTGGTCAAGGCAATTGATAGGTATAAAGTAACGCACTTCCCAGTTGTTCCACCAATATTGACAGCATTAACAAAAATAGTAGAGGATGTTGGGGCACACAGTCTCCAGAGTTTAAAGCAGGTTTCTTGTGGAGCAGCTCCTTTGAGCATGAAACTCATAGAAGACTTCGTTCAGGCCCTTCCTCATGTTGATTTTATTCAGGGATATGGCATGACTGAGACGACTGCAGTAGGAACTCGCGGTTTCAATACTGAAAAGATTAGGAAATATTCTTCAATTGGACTTTTAGCTCCAAACATGCAAGCTAAAGTGGTAGATTGGAATACCGGATCCTTTTTGCCTCCAGCTAGTATTGGTGAACTGTGGTTACGAGGACCTTCAATAATGAAAGGTTACTTGAATAATGCAAGGGCAACTATGTCAACAATTGATAATGATGGTTGGCTGCATACTGGGGACATCAGTTATTTTGATGAGGACGGATACTTACATGTATGTGATCGCATAAAGGAGATTATCAAATACAAGGGATTTCAGATTGCTCCTGCTGATTTAGAAGCTGTGTTGATTTCGCATCCTGAGATACTAGATGTTGGAGTTACAGGTGCCACCGATGAGGAATGTGGAGAGGTACCAGTGGCATTTGTGGTCAGGAAGCATGACAGTGAACTTTCTCAGGAAGATATCATGGATTACGTTGCCCGACAGGTTTCTCCACACAAGAAGGTCCGAAAGGTAGTGTTTACACATTCAATTCCAAGATCTGCAGCAGGGAAGATCCTCCGAAGGGAGCTCAGGAATTTCTTGGCTTCTAGACTGTAG

Protein Analysis

564

Amino Acids

62.01

Weight (kDa)

6.39

Isoelectric Point (pI)

35.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMP-binding PF00501 61 - 424 1e-86 AMP-binding enzyme
AMP-binding_C PF13193 476 - 550 6e-17 AMP-binding enzyme C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 848
Acc36I ACCTGC 1 cut(s) 982
Acc65I GGTACC 1 cut(s) 1504
AccB1I GGYRCC 2 cut(s) 1478, 1504
AccII CGCG 1 cut(s) 1113
AciI CCGC 3 cut(s) 626, 718, 1113
AclWI GGATC 3 cut(s) 1197, 1210, 1645
AcsI RAATTY 3 cut(s) 581, 857, 1672
AdeI CACNNNGTG 1 cut(s) 299
AfaI GTAC 1 cut(s) 1506
AfiI CCNNNNNNNGG 3 cut(s) 95, 216, 1660
AflIII ACRYGT 1 cut(s) 1363
AgsI TTSAA 8 cut(s) 537, 597, 754, 1120, 1149, 1254, 1273, 1626
AjnI CCWGG 1 cut(s) 514
Alw21I GWGCWC 1 cut(s) 1668
Alw26I GTCTC 3 cut(s) 163, 980, 1085
AlwI GGATC 3 cut(s) 1197, 1210, 1645
AoxI GGCC 4 cut(s) 264, 271, 599, 1047
ApeKI GCWGC 4 cut(s) 613, 1007, 1318, 1640
ApoI RAATTY 3 cut(s) 581, 857, 1672
AseI ATTAAT 1 cut(s) 867
Asp718I GGTACC 1 cut(s) 1504
AspS9I GGNCC 3 cut(s) 1048, 1247, 1600
AsuHPI GGTGA 3 cut(s) 78, 311, 1241
AvaII GGWCC 2 cut(s) 1247, 1600
BaeGI GKGCMC 1 cut(s) 970
BamHI GGATCC 1 cut(s) 1202
BanI GGYRCC 2 cut(s) 1478, 1504
BanII GRGCYC 1 cut(s) 1668
BbsI GAAGAC 1 cut(s) 1041
Bbv12I GWGCWC 1 cut(s) 1668
BbvI GCAGC 4 cut(s) 625, 1019, 1305, 1652
BccI CCATC 1 cut(s) 1304
BciT130I CCWGG 1 cut(s) 516
BciVI GTATCC 1 cut(s) 1349
BclI TGATCA 1 cut(s) 606
BcoDI GTCTC 3 cut(s) 163, 980, 1085
BfaI CTAG 3 cut(s) 1221, 1460, 1686
BfmI CTRYAG 4 cut(s) 699, 1098, 1638, 1691
BfuAI ACCTGC 1 cut(s) 982
BfuI GTATCC 1 cut(s) 1349
BglII AGATCT 1 cut(s) 1634
BisI GCNGC 5 cut(s) 614, 627, 1008, 1319, 1641
BlsI GCNGC 5 cut(s) 615, 628, 1009, 1320, 1642
Bme1390I CCNGG 1 cut(s) 516
Bme18I GGWCC 2 cut(s) 1247, 1600
BmgT120I GGNCC 3 cut(s) 1048, 1247, 1600
BmiI GGNNCC 3 cut(s) 1204, 1480, 1506
BmrFI CCNGG 1 cut(s) 516
BmrI ACTGGG 3 cut(s) 195, 908, 1335
BmsI GCATC 1 cut(s) 1456
BmuI ACTGGG 3 cut(s) 195, 908, 1335
BpiI GAAGAC 1 cut(s) 1041
BpmI CTGGAG 2 cut(s) 962, 1200
Bpu10I CCTNAGC 1 cut(s) 1667
Bsa29I ATCGAT 1 cut(s) 204
BsaJI CCNNGG 2 cut(s) 74, 261
BsaWI WCCGGW 1 cut(s) 1199
BsaXI ACNNNNNCTCC 2 cut(s) 960, 990
Bsc4I CCNNNNNNNGG 3 cut(s) 95, 216, 1660
Bse1I ACTGG 6 cut(s) 190, 602, 658, 914, 1330, 1508
Bse3DI GCAATG 1 cut(s) 445
BseBI CCWGG 1 cut(s) 516
BseCI ATCGAT 1 cut(s) 204
BseDI CCNNGG 2 cut(s) 74, 261
BseGI GGATG 3 cut(s) 70, 964, 1447
BseLI CCNNNNNNNGG 3 cut(s) 95, 216, 1660
BseMI GCAATG 1 cut(s) 445
BseMII CTCAG 4 cut(s) 1080, 1443, 1562, 1681
BseNI ACTGG 6 cut(s) 190, 602, 658, 914, 1330, 1508
BseSI GKGCMC 1 cut(s) 970
BseXI GCAGC 4 cut(s) 625, 1019, 1305, 1652
Bsh1236I CGCG 1 cut(s) 1113
BshFI GGCC 4 cut(s) 266, 273, 601, 1049
BshNI GGYRCC 2 cut(s) 1478, 1504
BshVI ATCGAT 1 cut(s) 204
BsiHKAI GWGCWC 1 cut(s) 1668
BsiSI CCGG 1 cut(s) 1200
BslFI GGGAC 2 cut(s) 661, 1343
BslI CCNNNNNNNGG 3 cut(s) 95, 216, 1660
BsmAI GTCTC 3 cut(s) 163, 980, 1085
BsmBI CGTCTC 1 cut(s) 1085
BsmFI GGGAC 2 cut(s) 661, 1343
BsnI GGCC 4 cut(s) 266, 273, 601, 1049
Bsp1286I GDGCHC 2 cut(s) 970, 1668
Bsp143I GATC 8 cut(s) 201, 414, 586, 606, 1202, 1372, 1634, 1650
Bsp19I CCATGG 1 cut(s) 261
BspACI CCGC 3 cut(s) 626, 718, 1113
BspANI GGCC 4 cut(s) 266, 273, 601, 1049
BspCNI CTCAG 4 cut(s) 1081, 1444, 1561, 1680
BspDI ATCGAT 1 cut(s) 204
BspFNI CGCG 1 cut(s) 1113
BspLI GGNNCC 3 cut(s) 1204, 1480, 1506
BspMAI CTGCAG 2 cut(s) 1102, 1642
BspMI ACCTGC 1 cut(s) 982
BspPI GGATC 3 cut(s) 1197, 1210, 1645
BspT107I GGYRCC 2 cut(s) 1478, 1504
BsrDI GCAATG 1 cut(s) 445
BsrI ACTGG 6 cut(s) 190, 602, 658, 914, 1330, 1508
BssECI CCNNGG 2 cut(s) 74, 261
BssMI GATC 8 cut(s) 201, 414, 586, 606, 1202, 1372, 1634, 1650
BssT1I CCWWGG 2 cut(s) 74, 261
Bst2UI CCWGG 1 cut(s) 516
Bst4CI ACNGT 6 cut(s) 549, 703, 974, 1236, 1538, 1692
BstAPI GCANNNNNTGC 1 cut(s) 449
BstC8I GCNNGC 2 cut(s) 486, 1176
BstDEI CTNAG 5 cut(s) 398, 1089, 1452, 1548, 1667
BstDSI CCRYGG 1 cut(s) 261
BstF5I GGATG 3 cut(s) 70, 964, 1447
BstFNI CGCG 1 cut(s) 1113
BstKTI GATC 8 cut(s) 204, 417, 589, 609, 1205, 1375, 1637, 1653
BstMAI GTCTC 3 cut(s) 163, 980, 1085
BstMBI GATC 8 cut(s) 201, 414, 586, 606, 1202, 1372, 1634, 1650
BstMWI GCNNNNNNNGC 3 cut(s) 319, 449, 715
BstNI CCWGG 1 cut(s) 516
BstNSI RCATGY 3 cut(s) 447, 1174, 1367
BstSCI CCNGG 1 cut(s) 514
BstSFI CTRYAG 4 cut(s) 699, 1098, 1638, 1691
BstSLI GKGCMC 1 cut(s) 970
BstUI CGCG 1 cut(s) 1113
BstV1I GCAGC 4 cut(s) 625, 1019, 1305, 1652
BstV2I GAAGAC 1 cut(s) 1041
BstX2I RGATCY 3 cut(s) 1202, 1634, 1650
BstXI CCANNNNNNTGG 1 cut(s) 262
BstYI RGATCY 3 cut(s) 1202, 1634, 1650
Bsu15I ATCGAT 1 cut(s) 204
BsuI GTATCC 1 cut(s) 1349
BsuRI GGCC 4 cut(s) 266, 273, 601, 1049
BsuTUI ATCGAT 1 cut(s) 204
BtgI CCRYGG 1 cut(s) 261
BtsCI GGATG 3 cut(s) 70, 964, 1447
BtsI GCAGTG 1 cut(s) 409
BtsIMutI CAGTG 5 cut(s) 183, 409, 609, 1515, 1543
BveI ACCTGC 1 cut(s) 982
Cac8I GCNNGC 2 cut(s) 486, 1176
Cfr13I GGNCC 3 cut(s) 1048, 1247, 1600
ClaI ATCGAT 1 cut(s) 204
Csp6I GTAC 1 cut(s) 1505
CspCI CAANNNNNGTGG 2 cut(s) 912, 947
CviQI GTAC 1 cut(s) 1505
DdeI CTNAG 5 cut(s) 398, 1089, 1452, 1548, 1667
DpnI GATC 8 cut(s) 203, 416, 588, 608, 1204, 1374, 1636, 1652
DpnII GATC 8 cut(s) 201, 414, 586, 606, 1202, 1372, 1634, 1650
DraI TTTAAA 1 cut(s) 987
DraIII CACNNNGTG 1 cut(s) 299
Ecl136II GAGCTC 1 cut(s) 1666
Eco130I CCWWGG 2 cut(s) 74, 261
Eco24I GRGCYC 1 cut(s) 1668
Eco32I GATATC 1 cut(s) 1558
Eco47I GGWCC 2 cut(s) 1247, 1600
Eco53kI GAGCTC 1 cut(s) 1666
EcoICRI GAGCTC 1 cut(s) 1666
EcoO109I RGGNCCY 2 cut(s) 1048, 1247
EcoRII CCWGG 1 cut(s) 514
EcoRV GATATC 1 cut(s) 1558
EcoT14I CCWWGG 2 cut(s) 74, 261
EcoT22I ATGCAT 1 cut(s) 445
EcoT38I GRGCYC 1 cut(s) 1668
ErhI CCWWGG 2 cut(s) 74, 261
Esp3I CGTCTC 1 cut(s) 1085
FaqI GGGAC 2 cut(s) 661, 1343
FbaI TGATCA 1 cut(s) 606
Fnu4HI GCNGC 5 cut(s) 614, 627, 1008, 1319, 1641
FokI GGATG 3 cut(s) 57, 971, 1434
FriOI GRGCYC 1 cut(s) 1668
Fsp4HI GCNGC 5 cut(s) 614, 627, 1008, 1319, 1641
FspBI CTAG 3 cut(s) 1221, 1460, 1686
GluI GCNGC 5 cut(s) 614, 627, 1008, 1319, 1641
GsuI CTGGAG 2 cut(s) 962, 1200
HaeIII GGCC 4 cut(s) 266, 273, 601, 1049
HapII CCGG 1 cut(s) 1200
HincII GTYRAC 1 cut(s) 1296
HindII GTYRAC 1 cut(s) 1296
HinfI GANTC 6 cut(s) 44, 99, 127, 206, 533, 688
HpaII CCGG 1 cut(s) 1200
HphI GGTGA 3 cut(s) 78, 311, 1241
Hpy166II GTNNAC 5 cut(s) 334, 1232, 1296, 1541, 1617
Hpy188I TCNGA 3 cut(s) 1410, 1604, 1658
Hpy188III TCNNGA 8 cut(s) 149, 418, 979, 1451, 1525, 1550, 1669, 1686
Hpy8I GTNNAC 5 cut(s) 334, 1232, 1296, 1541, 1617
HpyAV CCTTC 4 cut(s) 1061, 1260, 1591, 1653
HpyCH4III ACNGT 6 cut(s) 549, 703, 974, 1236, 1538, 1692
HpyCH4IV ACGT 1 cut(s) 1569
HpyF10VI GCNNNNNNNGC 3 cut(s) 319, 449, 715
HpyF3I CTNAG 5 cut(s) 398, 1089, 1452, 1548, 1667
HpySE526I ACGT 1 cut(s) 1569
KpnI GGTACC 1 cut(s) 1508
Ksp22I TGATCA 1 cut(s) 606
Kzo9I GATC 8 cut(s) 201, 414, 586, 606, 1202, 1372, 1634, 1650
LmnI GCTCC 5 cut(s) 1004, 1015, 1168, 1420, 1663
Lsp1109I GCAGC 4 cut(s) 625, 1019, 1305, 1652
LweI GCATC 1 cut(s) 1456
MaeI CTAG 3 cut(s) 1221, 1460, 1686
MaeII ACGT 1 cut(s) 1569
MaeIII GTNAC 5 cut(s) 379, 901, 1239, 1265, 1471
MalI GATC 8 cut(s) 203, 416, 588, 608, 1204, 1374, 1636, 1652
MboI GATC 8 cut(s) 201, 414, 586, 606, 1202, 1372, 1634, 1650
MboII GAAGA 6 cut(s) 766, 865, 1046, 1137, 1565, 1660
MfeI CAATTG 4 cut(s) 504, 885, 1149, 1299
MflI RGATCY 3 cut(s) 1202, 1634, 1650
MhlI GDGCHC 2 cut(s) 970, 1668
MmeI TCCRAC 3 cut(s) 510, 796, 1447
Mph1103I ATGCAT 1 cut(s) 445
MseI TTAA 6 cut(s) 26, 429, 573, 867, 941, 986
MslI CAYNNNNRTG 3 cut(s) 120, 1368, 1536
MspI CCGG 1 cut(s) 1200
MspR9I CCNGG 1 cut(s) 516
MunI CAATTG 4 cut(s) 504, 885, 1149, 1299
MvaI CCWGG 1 cut(s) 516
MvnI CGCG 1 cut(s) 1113
MwoI GCNNNNNNNGC 3 cut(s) 319, 449, 715
NcoI CCATGG 1 cut(s) 261
NdeII GATC 8 cut(s) 201, 414, 586, 606, 1202, 1372, 1634, 1650
NlaIV GGNNCC 3 cut(s) 1204, 1480, 1506
NsiI ATGCAT 1 cut(s) 445
NspI RCATGY 3 cut(s) 447, 1174, 1367
PciI ACATGT 1 cut(s) 1363
PfeI GAWTC 6 cut(s) 44, 99, 127, 206, 533, 688
PflFI GACNNNGTC 1 cut(s) 256
PfoI TCCNGGA 1 cut(s) 514
PkrI GCNGC 5 cut(s) 615, 628, 1009, 1320, 1642
PpuMI RGGWCCY 1 cut(s) 1247
PscI ACATGT 1 cut(s) 1363
PshBI ATTAAT 1 cut(s) 867
PsiI TTATAA 1 cut(s) 848
Psp124BI GAGCTC 1 cut(s) 1668
Psp5II RGGWCCY 1 cut(s) 1247
Psp6I CCWGG 1 cut(s) 514
PspGI CCWGG 1 cut(s) 514
PspN4I GGNNCC 3 cut(s) 1204, 1480, 1506
PspPI GGNCC 3 cut(s) 1048, 1247, 1600
PspPPI RGGWCCY 1 cut(s) 1247
PsrI GAACNNNNNNTAC 2 cut(s) 1224, 1256
PstI CTGCAG 2 cut(s) 1102, 1642
PsuI RGATCY 3 cut(s) 1202, 1634, 1650
PsyI GACNNNGTC 1 cut(s) 256
RsaI GTAC 1 cut(s) 1506
RsaNI GTAC 1 cut(s) 1505
RseI CAYNNNNRTG 3 cut(s) 120, 1368, 1536
SacI GAGCTC 1 cut(s) 1668
SaqAI TTAA 6 cut(s) 26, 429, 573, 867, 941, 986
SatI GCNGC 5 cut(s) 614, 627, 1008, 1319, 1641
Sau3AI GATC 8 cut(s) 201, 414, 586, 606, 1202, 1372, 1634, 1650
Sau96I GGNCC 3 cut(s) 1048, 1247, 1600
ScrFI CCNGG 1 cut(s) 516
SduI GDGCHC 2 cut(s) 970, 1668
SfaNI GCATC 1 cut(s) 1456
SfcI CTRYAG 4 cut(s) 699, 1098, 1638, 1691
SinI GGWCC 2 cut(s) 1247, 1600
SmiMI CAYNNNNRTG 3 cut(s) 120, 1368, 1536
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
SsiI CCGC 3 cut(s) 626, 718, 1113
SspI AATATT 2 cut(s) 930, 1142
SspMI CTAG 3 cut(s) 1221, 1460, 1686
SstI GAGCTC 1 cut(s) 1668
StyD4I CCNGG 1 cut(s) 514
StyI CCWWGG 2 cut(s) 74, 261
TaaI ACNGT 6 cut(s) 549, 703, 974, 1236, 1538, 1692
TaiI ACGT 1 cut(s) 1572
TaqI TCGA 3 cut(s) 204, 746, 836
TauI GCSGC 1 cut(s) 629
TfiI GAWTC 6 cut(s) 44, 99, 127, 206, 533, 688
Tru1I TTAA 6 cut(s) 26, 429, 573, 867, 941, 986
Tru9I TTAA 6 cut(s) 26, 429, 573, 867, 941, 986
TscAI CASTG 5 cut(s) 190, 409, 609, 1515, 1543
TseI GCWGC 4 cut(s) 613, 1007, 1318, 1640
TspDTI ATGAA 8 cut(s) 57, 154, 213, 404, 480, 866, 1037, 1274
TspGWI ACGGA 1 cut(s) 1368
TspRI CASTG 5 cut(s) 190, 409, 609, 1515, 1543
Tth111I GACNNNGTC 1 cut(s) 256
VpaK11BI GGWCC 2 cut(s) 1247, 1600
VspI ATTAAT 1 cut(s) 867
XapI RAATTY 3 cut(s) 581, 857, 1672
XbaI TCTAGA 1 cut(s) 1685
XceI RCATGY 3 cut(s) 447, 1174, 1367
XcmI CCANNNNNNNNNTGG 1 cut(s) 349
XspI CTAG 3 cut(s) 1221, 1460, 1686
Zsp2I ATGCAT 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.