Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0005432

Physical Location & Seq

Genomic Coordinates Reverse (-)

24026481 .. 24027503

Gene Structure 1023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG248100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGTACGTATTGTATTTGTCGGGGACTACTGGTGGGAGTAAGGGTGTTGTGCTAATTGAGGCTTCACATTATGACTACACAAGTTTGGAAAATGTGTATTTACCTATCGTCCCATTCTTTCACATATATGGGCTGTTGCTTTACGTGATGGGGTTGTTGTCTTTGGGGTCTAGAATTGTTGTGATGAAGAAATTTGATGTTGACCGTGTTGTTAAGCCCATTGATAGGTTGAAAGAGATTATCAAATACAAGGGCTTTCAGACTACCCCGGCAGATTTAGAAGCTGTGCTGATTAAACATCCTGAGATAGTAGATGTTGCAGTAACAGCAGCCATGGATGAAGAATGTGGAGAGGTGCCAGTGGCGTTTGTGGTTAGGAAAAATGGCAGCAAACTTTCCTGCAAAGATGTAATGGATTACGTTGCTGGACATGTTTCTCCACACAAGAAGCTGAGGAAGGTGGTGTTTACAAGTTCAATACCGAAATCTGCAGCTGGAAAGATTCTCAGAAGGGAGATTAGGAATTTATTGACTTCTAGACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009987 GO:0016405 GO:0016874 GO:0016877 GO:0042180 GO:0042181 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

181

Amino Acids

20.16

Weight (kDa)

9.35

Isoelectric Point (pI)

37.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	2 - 91	4.4e-11	AMP-binding enzyme
AMP-binding_C	PF13193	93 - 167	2.1e-18	AMP-binding enzyme C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19010
fragaria_vesca	FvH4_5g23550
malus_domestica	MD14G1050700.v1.1
prunus_persica	Prupe.7G085200_v2.0.a1 Prupe.8G160600_v2.0.a1
pyrus_communis	pycom12g04570 pycom14g04200
rosa_chinensis	RchiOBHm_Chr3g0478721 RchiOBHm_Chr7g0212861
rosa_laevigata	RLG00000002864 RLG00000023630
rosa_multiflora	Rmu_sc0000394.1_g000050 Rmu_sc0001519.1_g000013
rosa_roxburghii	Rroxscaffold_3G00246500 Rroxscaffold_6G00403160
rosa_rugosa	Rorug03G0167300 Rorug03G0167400 Rorug07G0137100
rosa_samantha	Rh3AG219500 Rh3BG251200 Rh3CG248100 Rh3CG248200 Rh3DG244500 Rh7BG264300 Rh7CG287700 Rh7DG276800
rosa_wichuraiana	Rw3G019720 Rw7G023220 Rw7G023340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	355
AcsI	RAATTY	2 cut(s)	191, 523
AfaI	GTAC	1 cut(s)	5
AfiI	CCNNNNNNNGG	1 cut(s)	225
AflIII	ACRYGT	1 cut(s)	430
AgsI	TTSAA	2 cut(s)	232, 477
AluBI	AGCT	3 cut(s)	284, 451, 494
AluI	AGCT	3 cut(s)	284, 451, 494
ApeKI	GCWGC	3 cut(s)	329, 387, 491
ApoI	RAATTY	2 cut(s)	191, 523
AsuC2I	CCSGG	1 cut(s)	269
BanI	GGYRCC	1 cut(s)	355
BbvCI	CCTCAGC	1 cut(s)	452
BbvI	GCAGC	3 cut(s)	341, 399, 503
BccI	CCATC	1 cut(s)	142
BcnI	CCSGG	1 cut(s)	269
BfaI	CTAG	2 cut(s)	171, 537
BfmI	CTRYAG	1 cut(s)	489
BisI	GCNGC	3 cut(s)	330, 388, 492
BlsI	GCNGC	3 cut(s)	331, 389, 493
Bme1390I	CCNGG	1 cut(s)	269
BmiI	GGNNCC	1 cut(s)	357
BmrFI	CCNGG	1 cut(s)	269
Bpu10I	CCTNAGC	1 cut(s)	452
BpuMI	CCSGG	1 cut(s)	269
BsaAI	YACGTR	2 cut(s)	7, 145
BsaJI	CCNNGG	2 cut(s)	267, 333
BsaXI	ACNNNNNCTCC	2 cut(s)	28, 58
Bsc4I	CCNNNNNNNGG	1 cut(s)	225
Bse1I	ACTGG	2 cut(s)	34, 359
BseDI	CCNNGG	2 cut(s)	267, 333
BseGI	GGATG	2 cut(s)	298, 343
BseLI	CCNNNNNNNGG	1 cut(s)	225
BseMII	CTCAG	3 cut(s)	294, 443, 520
BseNI	ACTGG	2 cut(s)	34, 359
BseXI	GCAGC	3 cut(s)	341, 399, 503
BshNI	GGYRCC	1 cut(s)	355
BsiSI	CCGG	1 cut(s)	269
BslFI	GGGAC	2 cut(s)	37, 95
BslI	CCNNNNNNNGG	1 cut(s)	225
BsmFI	GGGAC	2 cut(s)	37, 95
Bsp19I	CCATGG	1 cut(s)	333
BspCNI	CTCAG	3 cut(s)	295, 444, 519
BspLI	GGNNCC	1 cut(s)	357
BspMAI	CTGCAG	1 cut(s)	493
BspT107I	GGYRCC	1 cut(s)	355
BsrI	ACTGG	2 cut(s)	34, 359
BssECI	CCNNGG	2 cut(s)	267, 333
BssT1I	CCWWGG	1 cut(s)	333
Bst4CI	ACNGT	1 cut(s)	206
BstBAI	YACGTR	2 cut(s)	7, 145
BstDEI	CTNAG	3 cut(s)	303, 452, 506
BstDSI	CCRYGG	1 cut(s)	333
BstF5I	GGATG	2 cut(s)	298, 343
BstMWI	GCNNNNNNNGC	1 cut(s)	326
BstNSI	RCATGY	1 cut(s)	434
BstSCI	CCNGG	1 cut(s)	267
BstSFI	CTRYAG	1 cut(s)	489
BstSNI	TACGTA	1 cut(s)	7
BstV1I	GCAGC	3 cut(s)	341, 399, 503
BtgI	CCRYGG	1 cut(s)	333
BtsCI	GGATG	2 cut(s)	298, 343
BtsIMutI	CAGTG	1 cut(s)	366
Csp6I	GTAC	1 cut(s)	4
CviAII	CATG	2 cut(s)	334, 431
CviJI	RGCY	8 cut(s)	62, 133, 217, 255, 284, 332, 451, 494
CviKI_1	RGCY	8 cut(s)	62, 133, 217, 255, 284, 332, 451, 494
CviQI	GTAC	1 cut(s)	4
DdeI	CTNAG	3 cut(s)	303, 452, 506
Eco105I	TACGTA	1 cut(s)	7
Eco130I	CCWWGG	1 cut(s)	333
EcoT14I	CCWWGG	1 cut(s)	333
ErhI	CCWWGG	1 cut(s)	333
FaeI	CATG	2 cut(s)	337, 434
FaiI	YATR	6 cut(s)	72, 125, 127, 129, 335, 432
FaqI	GGGAC	2 cut(s)	37, 95
FatI	CATG	2 cut(s)	333, 430
Fnu4HI	GCNGC	3 cut(s)	330, 388, 492
FokI	GGATG	2 cut(s)	285, 350
Fsp4HI	GCNGC	3 cut(s)	330, 388, 492
FspBI	CTAG	2 cut(s)	171, 537
GluI	GCNGC	3 cut(s)	330, 388, 492
HapII	CCGG	1 cut(s)	269
Hin1II	CATG	2 cut(s)	337, 434
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	2 cut(s)	502, 540
HpaII	CCGG	1 cut(s)	269
Hpy166II	GTNNAC	2 cut(s)	202, 468
Hpy188I	TCNGA	2 cut(s)	261, 509
Hpy188III	TCNNGA	3 cut(s)	171, 302, 537
Hpy8I	GTNNAC	2 cut(s)	202, 468
HpyAV	CCTTC	2 cut(s)	451, 504
HpyCH4III	ACNGT	1 cut(s)	206
HpyCH4IV	ACGT	3 cut(s)	6, 144, 420
HpyCH4V	TGCA	3 cut(s)	320, 402, 491
HpyF10VI	GCNNNNNNNGC	1 cut(s)	326
HpyF3I	CTNAG	3 cut(s)	303, 452, 506
HpySE526I	ACGT	3 cut(s)	6, 144, 420
Hsp92II	CATG	2 cut(s)	337, 434
LpnPI	CCDG	7 cut(s)	15, 282, 315, 372, 411, 412, 480
Lsp1109I	GCAGC	3 cut(s)	341, 399, 503
MaeI	CTAG	2 cut(s)	171, 537
MaeII	ACGT	3 cut(s)	6, 144, 420
MaeIII	GTNAC	1 cut(s)	322
MboII	GAAGA	2 cut(s)	199, 353
MluCI	AATT	4 cut(s)	54, 174, 191, 523
MlyI	GAGTC	1 cut(s)	534
MnlI	CCTC	3 cut(s)	52, 346, 447
MseI	TTAA	2 cut(s)	213, 294
MslI	CAYNNNNRTG	1 cut(s)	126
MspA1I	CMGCKG	1 cut(s)	494
MspI	CCGG	1 cut(s)	269
MspR9I	CCNGG	1 cut(s)	269
MwoI	GCNNNNNNNGC	1 cut(s)	326
NciI	CCSGG	1 cut(s)	269
NcoI	CCATGG	1 cut(s)	333
NlaIII	CATG	2 cut(s)	337, 434
NlaIV	GGNNCC	1 cut(s)	357
NspI	RCATGY	1 cut(s)	434
PciI	ACATGT	1 cut(s)	430
PfeI	GAWTC	1 cut(s)	502
PkrI	GCNGC	3 cut(s)	331, 389, 493
PleI	GAGTC	1 cut(s)	534
PpsI	GAGTC	1 cut(s)	534
Ppu21I	YACGTR	2 cut(s)	7, 145
PscI	ACATGT	1 cut(s)	430
PspN4I	GGNNCC	1 cut(s)	357
PstI	CTGCAG	1 cut(s)	493
PvuII	CAGCTG	1 cut(s)	494
RsaI	GTAC	1 cut(s)	5
RsaNI	GTAC	1 cut(s)	4
RseI	CAYNNNNRTG	1 cut(s)	126
SaqAI	TTAA	2 cut(s)	213, 294
SatI	GCNGC	3 cut(s)	330, 388, 492
SchI	GAGTC	1 cut(s)	534
ScrFI	CCNGG	1 cut(s)	269
SfcI	CTRYAG	1 cut(s)	489
SmiMI	CAYNNNNRTG	1 cut(s)	126
SnaBI	TACGTA	1 cut(s)	7
Sse9I	AATT	4 cut(s)	54, 174, 191, 523
SspMI	CTAG	2 cut(s)	171, 537
StyD4I	CCNGG	1 cut(s)	267
StyI	CCWWGG	1 cut(s)	333
TaaI	ACNGT	1 cut(s)	206
TaiI	ACGT	3 cut(s)	9, 147, 423
TasI	AATT	4 cut(s)	54, 174, 191, 523
TfiI	GAWTC	1 cut(s)	502
Tru1I	TTAA	2 cut(s)	213, 294
Tru9I	TTAA	2 cut(s)	213, 294
TscAI	CASTG	1 cut(s)	366
TseI	GCWGC	3 cut(s)	329, 387, 491
TspDTI	ATGAA	2 cut(s)	200, 354
TspRI	CASTG	1 cut(s)	366
XapI	RAATTY	2 cut(s)	191, 523
XbaI	TCTAGA	2 cut(s)	170, 536
XceI	RCATGY	1 cut(s)	434
XspI	CTAG	2 cut(s)	171, 537

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.