Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0005432

Physical Location & Seq

Genomic Coordinates Reverse (-)

22434314 .. 22439352

Gene Structure 5039 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG219500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGTTTAGTAAAGTTGATCAAGCTCCAAGGCTAGTGCTTAAGCAGCAAGACACCGCAGCGATACTGTATTCGTCGGGGACTACTGGTGGGAGCAAGGTTGTTGTGCTAACACATAGGAATCTTATAGCTGCAGTGGAGCTCTTTGTGCGTTTTGAAGCTTCACAGTATGACTACACAAGTTTGGAGAATGTGTATTTAGCTATCGTCCCATTCTTTCACATATACGGGTTGTCGCTTTACGTGATGGGGTTGTTGTCTTTGGGGTCTAGAATTATTGTGATGAAGAAATTTGATGTTGACCATGTTGTTAAGTCCATTGATAGGTATAAAGTCACACATTTCCCTCTTGTTCCACCAATATTAGCAGCATTGACAAAAAAGGTAGCCAAAGATGTGACGGCAGCACATGGTCTTCGGAGTTTAAAGCAGGTTGCTTCTGGAGCAGCTCCTTTGAGCATGAAAATCATAGAGGACTTTGTTCGGGCCCTTCCTCATGCTGATTTTATTCAGGGATATGGCTTGACTGAGACCACTGCAGTAGGAACTCGCGGTTTTAATACTGAAAGGTTTAAGAACTATTCTTCAATAGGACTTTTAGCTCCAAATATGCAAGCTAAAGTAGTAGACTGGAAAACTGGAACCCCTTTGCCTCCAAACAATTCTGGTGAGCTTTGGTTACGCGGGCCAGCGATCATGAAAGAGTTGAAGGAGATTATCAAATACAAGGGCTTTCAGATTTCCCCGGCAGAATTAGAAGCGGTGCTGATTAACCATCCTGAGATAGTAGATATTTCAGTAACAGCAGCCATGGATGAAGAATGTGGAGAGGTGCCAGTGGCGTTTGTGGTTAGGAAAAATGGCAGTAAACTTTCCCGCAAAGCTGTAATGGATTACGTTGCTGGACATGTTGCTCCACACAAGAAGGTCAGGAAGGTGGTGTTTACAAGTTCAATACCCAAATCTGCGGCTGGAAAGATTCTCAGAAGGGAGCTTAGGAATTTATTGACTTCTAGACTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009987 GO:0016405 GO:0016874 GO:0016877 GO:0042180 GO:0042181 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

339

Amino Acids

37.34

Weight (kDa)

9.72

Isoelectric Point (pI)

30.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	12 - 233	4e-59	AMP-binding enzyme
AMP-binding_C	PF13193	250 - 325	2.8e-17	AMP-binding enzyme C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19010
fragaria_vesca	FvH4_5g23550
malus_domestica	MD14G1050700.v1.1
prunus_persica	Prupe.7G085200_v2.0.a1 Prupe.8G160600_v2.0.a1
pyrus_communis	pycom12g04570 pycom14g04200
rosa_chinensis	RchiOBHm_Chr3g0478721 RchiOBHm_Chr7g0212861
rosa_laevigata	RLG00000002864 RLG00000023630
rosa_multiflora	Rmu_sc0000394.1_g000050 Rmu_sc0001519.1_g000013
rosa_roxburghii	Rroxscaffold_3G00246500 Rroxscaffold_6G00403160
rosa_rugosa	Rorug03G0167300 Rorug03G0167400 Rorug07G0137100
rosa_samantha	Rh3AG219500 Rh3BG251200 Rh3CG248100 Rh3CG248200 Rh3DG244500 Rh7BG264300 Rh7CG287700 Rh7DG276800
rosa_wichuraiana	Rw3G019720 Rw7G023220 Rw7G023340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	418
AccB1I	GGYRCC	1 cut(s)	829
AccI	GTMKAC	1 cut(s)	624
AccII	CGCG	2 cut(s)	549, 681
AciI	CCGC	6 cut(s)	54, 549, 681, 758, 874, 965
AcsI	RAATTY	2 cut(s)	287, 997
AfiI	CCNNNNNNNGG	1 cut(s)	321
AflII	CTTAAG	1 cut(s)	38
AflIII	ACRYGT	1 cut(s)	904
AgsI	TTSAA	4 cut(s)	155, 585, 706, 951
Alw21I	GWGCWC	1 cut(s)	141
Alw26I	GTCTC	1 cut(s)	521
AoxI	GGCC	2 cut(s)	483, 683
ApaI	GGGCCC	1 cut(s)	487
ApeKI	GCWGC	7 cut(s)	43, 56, 128, 365, 401, 443, 803
ApoI	RAATTY	2 cut(s)	287, 997
AspS9I	GGNCC	3 cut(s)	483, 484, 683
AsuC2I	CCSGG	1 cut(s)	743
AsuHPI	GGTGA	1 cut(s)	677
BaeGI	GKGCMC	1 cut(s)	487
BanI	GGYRCC	1 cut(s)	829
BanII	GRGCYC	2 cut(s)	141, 487
BbsI	GAAGAC	1 cut(s)	404
Bbv12I	GWGCWC	1 cut(s)	141
BbvI	GCAGC	7 cut(s)	55, 68, 115, 377, 413, 455, 815
BccI	CCATC	2 cut(s)	238, 780
BceAI	ACGGC	1 cut(s)	414
BclI	TGATCA	1 cut(s)	16
BcnI	CCSGG	1 cut(s)	743
BcoDI	GTCTC	1 cut(s)	521
BfaI	CTAG	3 cut(s)	32, 267, 1011
BfmI	CTRYAG	2 cut(s)	129, 534
BfrI	CTTAAG	1 cut(s)	38
BfuAI	ACCTGC	1 cut(s)	418
BisI	GCNGC	8 cut(s)	44, 57, 129, 366, 402, 444, 804, 966
BlsI	GCNGC	8 cut(s)	45, 58, 130, 367, 403, 445, 805, 967
Bme1390I	CCNGG	1 cut(s)	743
BmgT120I	GGNCC	3 cut(s)	483, 484, 683
BmiI	GGNNCC	3 cut(s)	485, 640, 831
BmrFI	CCNGG	1 cut(s)	743
BpiI	GAAGAC	1 cut(s)	404
BpmI	CTGGAG	1 cut(s)	459
Bpu10I	CCTNAGC	1 cut(s)	992
BpuMI	CCSGG	1 cut(s)	743
BsaAI	YACGTR	1 cut(s)	241
BsaI	GGTCTC	1 cut(s)	521
BsaJI	CCNNGG	3 cut(s)	26, 741, 807
BsaXI	ACNNNNNCTCC	2 cut(s)	176, 206
Bsc4I	CCNNNNNNNGG	1 cut(s)	321
Bse1I	ACTGG	4 cut(s)	88, 632, 640, 833
BseDI	CCNNGG	3 cut(s)	26, 741, 807
BseGI	GGATG	2 cut(s)	772, 817
BseLI	CCNNNNNNNGG	1 cut(s)	321
BseMII	CTCAG	3 cut(s)	516, 768, 994
BseNI	ACTGG	4 cut(s)	88, 632, 640, 833
BseSI	GKGCMC	1 cut(s)	487
BseXI	GCAGC	7 cut(s)	55, 68, 115, 377, 413, 455, 815
Bsh1236I	CGCG	2 cut(s)	549, 681
BshFI	GGCC	2 cut(s)	485, 685
BshNI	GGYRCC	1 cut(s)	829
BsiHKAI	GWGCWC	1 cut(s)	141
BsiSI	CCGG	1 cut(s)	743
BslFI	GGGAC	2 cut(s)	91, 191
BslI	CCNNNNNNNGG	1 cut(s)	321
BsmAI	GTCTC	1 cut(s)	521
BsmFI	GGGAC	2 cut(s)	91, 191
BsnI	GGCC	2 cut(s)	485, 685
Bso31I	GGTCTC	1 cut(s)	521
Bsp120I	GGGCCC	1 cut(s)	483
Bsp1286I	GDGCHC	2 cut(s)	141, 487
Bsp143I	GATC	2 cut(s)	16, 690
Bsp19I	CCATGG	1 cut(s)	807
BspACI	CCGC	6 cut(s)	54, 549, 681, 758, 874, 965
BspANI	GGCC	2 cut(s)	485, 685
BspCNI	CTCAG	3 cut(s)	517, 769, 993
BspFNI	CGCG	2 cut(s)	549, 681
BspHI	TCATGA	1 cut(s)	693
BspLI	GGNNCC	3 cut(s)	485, 640, 831
BspMAI	CTGCAG	2 cut(s)	133, 538
BspMI	ACCTGC	1 cut(s)	418
BspT107I	GGYRCC	1 cut(s)	829
BspTI	CTTAAG	1 cut(s)	38
BspTNI	GGTCTC	1 cut(s)	521
BsrI	ACTGG	4 cut(s)	88, 632, 640, 833
BssECI	CCNNGG	3 cut(s)	26, 741, 807
BssMI	GATC	2 cut(s)	16, 690
BssT1I	CCWWGG	2 cut(s)	26, 807
Bst4CI	ACNGT	2 cut(s)	66, 165
BstAFI	CTTAAG	1 cut(s)	38
BstBAI	YACGTR	1 cut(s)	241
BstC8I	GCNNGC	3 cut(s)	612, 683, 687
BstDEI	CTNAG	4 cut(s)	525, 777, 980, 992
BstDSI	CCRYGG	1 cut(s)	807
BstF5I	GGATG	2 cut(s)	772, 817
BstFNI	CGCG	2 cut(s)	549, 681
BstKTI	GATC	2 cut(s)	19, 693
BstMAI	GTCTC	1 cut(s)	521
BstMBI	GATC	2 cut(s)	16, 690
BstMWI	GCNNNNNNNGC	3 cut(s)	43, 145, 440
BstNSI	RCATGY	1 cut(s)	908
BstSCI	CCNGG	1 cut(s)	741
BstSFI	CTRYAG	2 cut(s)	129, 534
BstSLI	GKGCMC	1 cut(s)	487
BstUI	CGCG	2 cut(s)	549, 681
BstV1I	GCAGC	7 cut(s)	55, 68, 115, 377, 413, 455, 815
BstV2I	GAAGAC	1 cut(s)	404
BsuRI	GGCC	2 cut(s)	485, 685
BtgI	CCRYGG	1 cut(s)	807
BtsCI	GGATG	2 cut(s)	772, 817
BtsI	GCAGTG	2 cut(s)	138, 531
BtsIMutI	CAGTG	3 cut(s)	138, 531, 840
BveI	ACCTGC	1 cut(s)	418
Cac8I	GCNNGC	3 cut(s)	612, 683, 687
CciI	TCATGA	1 cut(s)	693
Cfr13I	GGNCC	3 cut(s)	483, 484, 683
CviAII	CATG	7 cut(s)	302, 407, 457, 494, 694, 808, 905
DdeI	CTNAG	4 cut(s)	525, 777, 980, 992
DpnI	GATC	2 cut(s)	18, 692
DpnII	GATC	2 cut(s)	16, 690
DraI	TTTAAA	1 cut(s)	423
Ecl136II	GAGCTC	1 cut(s)	139
Eco130I	CCWWGG	2 cut(s)	26, 807
Eco24I	GRGCYC	2 cut(s)	141, 487
Eco31I	GGTCTC	1 cut(s)	521
Eco53kI	GAGCTC	1 cut(s)	139
EcoICRI	GAGCTC	1 cut(s)	139
EcoO109I	RGGNCCY	1 cut(s)	484
EcoT14I	CCWWGG	2 cut(s)	26, 807
EcoT38I	GRGCYC	2 cut(s)	141, 487
ErhI	CCWWGG	2 cut(s)	26, 807
FaeI	CATG	7 cut(s)	305, 410, 460, 497, 697, 811, 908
FaqI	GGGAC	2 cut(s)	91, 191
FatI	CATG	7 cut(s)	301, 406, 456, 493, 693, 807, 904
FauI	CCCGC	2 cut(s)	674, 881
FbaI	TGATCA	1 cut(s)	16
FblI	GTMKAC	1 cut(s)	624
Fnu4HI	GCNGC	8 cut(s)	44, 57, 129, 366, 402, 444, 804, 966
FokI	GGATG	2 cut(s)	759, 824
FriOI	GRGCYC	2 cut(s)	141, 487
Fsp4HI	GCNGC	8 cut(s)	44, 57, 129, 366, 402, 444, 804, 966
FspBI	CTAG	3 cut(s)	32, 267, 1011
GluI	GCNGC	8 cut(s)	44, 57, 129, 366, 402, 444, 804, 966
GsuI	CTGGAG	1 cut(s)	459
HaeIII	GGCC	2 cut(s)	485, 685
HapII	CCGG	1 cut(s)	743
Hin1II	CATG	7 cut(s)	305, 410, 460, 497, 697, 811, 908
HincII	GTYRAC	1 cut(s)	298
HindII	GTYRAC	1 cut(s)	298
HindIII	AAGCTT	1 cut(s)	156
HinfI	GANTC	3 cut(s)	118, 976, 1014
HpaII	CCGG	1 cut(s)	743
HphI	GGTGA	1 cut(s)	677
Hpy166II	GTNNAC	4 cut(s)	298, 625, 866, 942
Hpy188I	TCNGA	3 cut(s)	417, 735, 983
Hpy188III	TCNNGA	6 cut(s)	267, 438, 694, 776, 928, 1011
Hpy8I	GTNNAC	4 cut(s)	298, 625, 866, 942
Hpy99I	CGWCG	1 cut(s)	76
HpyAV	CCTTC	5 cut(s)	497, 700, 916, 925, 978
HpyCH4III	ACNGT	2 cut(s)	66, 165
HpyCH4IV	ACGT	2 cut(s)	240, 894
HpyCH4V	TGCA	3 cut(s)	131, 536, 610
HpyF10VI	GCNNNNNNNGC	3 cut(s)	43, 145, 440
HpyF3I	CTNAG	4 cut(s)	525, 777, 980, 992
HpySE526I	ACGT	2 cut(s)	240, 894
Hsp92II	CATG	7 cut(s)	305, 410, 460, 497, 697, 811, 908
Ksp22I	TGATCA	1 cut(s)	16
Kzo9I	GATC	2 cut(s)	16, 690
LmnI	GCTCC	8 cut(s)	28, 90, 136, 440, 451, 604, 916, 988
Lsp1109I	GCAGC	7 cut(s)	55, 68, 115, 377, 413, 455, 815
MaeI	CTAG	3 cut(s)	32, 267, 1011
MaeII	ACGT	2 cut(s)	240, 894
MaeIII	GTNAC	4 cut(s)	331, 394, 675, 796
MalI	GATC	2 cut(s)	18, 692
MboI	GATC	2 cut(s)	16, 690
MboII	GAAGA	4 cut(s)	295, 404, 573, 827
MhlI	GDGCHC	2 cut(s)	141, 487
MluCI	AATT	5 cut(s)	270, 287, 658, 749, 997
MlyI	GAGTC	1 cut(s)	1008
MnlI	CCTC	5 cut(s)	354, 463, 501, 660, 820
MseI	TTAA	6 cut(s)	39, 309, 422, 555, 570, 768
MspCI	CTTAAG	1 cut(s)	38
MspI	CCGG	1 cut(s)	743
MspR9I	CCNGG	1 cut(s)	743
MvnI	CGCG	2 cut(s)	549, 681
MwoI	GCNNNNNNNGC	3 cut(s)	43, 145, 440
NciI	CCSGG	1 cut(s)	743
NcoI	CCATGG	1 cut(s)	807
NdeII	GATC	2 cut(s)	16, 690
NlaIII	CATG	7 cut(s)	305, 410, 460, 497, 697, 811, 908
NlaIV	GGNNCC	3 cut(s)	485, 640, 831
NmuCI	GTSAC	2 cut(s)	331, 394
NspI	RCATGY	1 cut(s)	908
PagI	TCATGA	1 cut(s)	693
PciI	ACATGT	1 cut(s)	904
PfeI	GAWTC	2 cut(s)	118, 976
PkrI	GCNGC	8 cut(s)	45, 58, 130, 367, 403, 445, 805, 967
PleI	GAGTC	1 cut(s)	1008
PpsI	GAGTC	1 cut(s)	1008
Ppu21I	YACGTR	1 cut(s)	241
PscI	ACATGT	1 cut(s)	904
Psp124BI	GAGCTC	1 cut(s)	141
PspN4I	GGNNCC	3 cut(s)	485, 640, 831
PspOMI	GGGCCC	1 cut(s)	483
PspPI	GGNCC	3 cut(s)	483, 484, 683
PstI	CTGCAG	2 cut(s)	133, 538
SacI	GAGCTC	1 cut(s)	141
SaqAI	TTAA	6 cut(s)	39, 309, 422, 555, 570, 768
SatI	GCNGC	8 cut(s)	44, 57, 129, 366, 402, 444, 804, 966
Sau3AI	GATC	2 cut(s)	16, 690
Sau96I	GGNCC	3 cut(s)	483, 484, 683
SchI	GAGTC	1 cut(s)	1008
ScrFI	CCNGG	1 cut(s)	743
SduI	GDGCHC	2 cut(s)	141, 487
SfcI	CTRYAG	2 cut(s)	129, 534
SmlI	CTYRAG	1 cut(s)	38
SmoI	CTYRAG	1 cut(s)	38
Sse9I	AATT	5 cut(s)	270, 287, 658, 749, 997
SsiI	CCGC	6 cut(s)	54, 549, 681, 758, 874, 965
SspI	AATATT	1 cut(s)	360
SspMI	CTAG	3 cut(s)	32, 267, 1011
SstI	GAGCTC	1 cut(s)	141
StyD4I	CCNGG	1 cut(s)	741
StyI	CCWWGG	2 cut(s)	26, 807
TaaI	ACNGT	2 cut(s)	66, 165
TaiI	ACGT	2 cut(s)	243, 897
TasI	AATT	5 cut(s)	270, 287, 658, 749, 997
TauI	GCSGC	1 cut(s)	968
TfiI	GAWTC	2 cut(s)	118, 976
Tru1I	TTAA	6 cut(s)	39, 309, 422, 555, 570, 768
Tru9I	TTAA	6 cut(s)	39, 309, 422, 555, 570, 768
TscAI	CASTG	3 cut(s)	138, 538, 840
TseFI	GTSAC	2 cut(s)	331, 394
TseI	GCWGC	7 cut(s)	43, 56, 128, 365, 401, 443, 803
Tsp45I	GTSAC	2 cut(s)	331, 394
TspDTI	ATGAA	4 cut(s)	296, 473, 710, 828
TspRI	CASTG	3 cut(s)	138, 538, 840
Vha464I	CTTAAG	1 cut(s)	38
XapI	RAATTY	2 cut(s)	287, 997
XbaI	TCTAGA	2 cut(s)	266, 1010
XceI	RCATGY	1 cut(s)	908
XmiI	GTMKAC	1 cut(s)	624
XspI	CTAG	3 cut(s)	32, 267, 1011

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.