Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0005432

Physical Location & Seq

Genomic Coordinates Reverse (-)

24126338 .. 24131665

Gene Structure 5328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG264300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1596 bp

ATGGCTAAAACCTCAAGCAACAGCTTAAACCCTGAAAAGCATGAATCTTTGGCTACCAAACAACAACAACAACATCCATGGTGGTTTTCACCAGATACAGGAATCTACCACAGCAAACACCCTAATGTGAATCTCCCCACAGACCCTTTTCTTGATGTTGTCTCATTCATTTTCTCACACAAGCACACTGGGGTTTCAGCTTTGATTGATTCCTCATCTGGGTTTTCAATATCTTACTCAAAGCTCTATTCTTTGACCAAGTCCATGGCCTCTGGCCTCAACAAAATGGGTGTTTCACAAGGTGATGTTGTTCTGCTTCTTTTGCCTAATTCTGTTTACTATCCCATTGTTTTCTTGGGTGTTTTGTATATTGGTGCTGTTGTTACAACCATGAACCCTCTAAGCAGTGTGGTAGAGATCAAGAAACAGATTAAGGATTGCAATGCATGTTTTGCTTTTACTGGATATGAAAATGTTGATAAATTGCAAGCATTGGGTATTCCTGCAATTGCAGTTCCAGGAAATGTAGTGTTGGATTCAAATAAAGAAGTGTTTTCAGTTTTTTATGAGCTTGTTAATAGTGAAGTTGATTTGGCTCCAAGGCCAGTGATCAAGCAGCAAGACACTGCGGCGATATTGTATTCGTCGGGGACTACTGGTGTGAGTAAAGGTGTTTTGCTAACACATGGGAATCTCATAGCTACAGTTGAGCTTTTTGTGCGGTTTGAGGCTTCACAATATGAGTATTCGAGCTTGAAGAATGTGTATTTATCTGTTCTGCCATTGTTTCACATATACGGGTTGGCACTTATAGTGGTTGGATTATTGTCTTTGGGGTCGAGCATTGTTATAATGAGGAAATTTGATGTTAATGAGGTGGTCAAGGCGATTGATAGGTTTAAAGTAACGCACTTCCCAGTTGTTCCACCAATATTGACAGCATTAACAAAAATAGTAGAGGATGTTGGGGTACACAGTTTCCAGAGTTTAAAGCAGGTTTCTTGTGGAGCAGCTCCTTTGAGCATGAAACTCATAGAAGACTTCGTTCAGGCCCTTCCTCATGTTGATTTTATTCAGGGATATGGCATGACTGAGACGACTGCAGTAGGAACTCGCGGTTTTAATACTGAAAAGATTAGGAAATATTCTTCAATTGGACTTTTAGCTCCAAACATGCAAGCTAAAGTGGTAGATTGGAAAACCGGATCCTTTTTGCCACCAGCTAGTATTGGTGAACTGTGGTTACGAGGACCTTCAATTATGAGAGGTTACTTGAACAATGCAAGGGCAACTATGTCAACAATTGATAATGATGGTTGGCTGCGTACTGGGGACATCAGTTATTTTGATGAGGATGGATACTTACATGTATGTGATCGCATAAAGGAGATTATCAAATACAAGGGATTTCAGATTGCTCCTGCTGATTTAGAAGCTGTGTTGATTTCGCATCCTGAGATACTAGATGTTGGAGTTACAGGTGCCACCGATGAGGAATGTGGAGAGGTACCAGTGGCATTTGTGGTCAGGAAGCATGACAGTGAACTTTCTCAGGAAGATATCATGGATTACATTGCCCGACAGGTTTTTTCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009987 GO:0016405 GO:0016874 GO:0016877 GO:0042180 GO:0042181 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

531

Amino Acids

58.3

Weight (kDa)

5.79

Isoelectric Point (pI)

33.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	62 - 425	1e-86	AMP-binding enzyme
AMP-binding_C	PF13193	477 - 528	3.3e-10	AMP-binding enzyme C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19010
fragaria_vesca	FvH4_5g23550
malus_domestica	MD14G1050700.v1.1
prunus_persica	Prupe.7G085200_v2.0.a1 Prupe.8G160600_v2.0.a1
pyrus_communis	pycom12g04570 pycom14g04200
rosa_chinensis	RchiOBHm_Chr3g0478721 RchiOBHm_Chr7g0212861
rosa_laevigata	RLG00000002864 RLG00000023630
rosa_multiflora	Rmu_sc0000394.1_g000050 Rmu_sc0001519.1_g000013
rosa_roxburghii	Rroxscaffold_3G00246500 Rroxscaffold_6G00403160
rosa_rugosa	Rorug03G0167300 Rorug03G0167400 Rorug07G0137100
rosa_samantha	Rh3AG219500 Rh3BG251200 Rh3CG248100 Rh3CG248200 Rh3DG244500 Rh7BG264300 Rh7CG287700 Rh7DG276800
rosa_wichuraiana	Rw3G019720 Rw7G023220 Rw7G023340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	851
Acc36I	ACCTGC	1 cut(s)	985
Acc65I	GGTACC	1 cut(s)	1507
AccB1I	GGYRCC	2 cut(s)	1481, 1507
AccII	CGCG	1 cut(s)	1116
AciI	CCGC	3 cut(s)	629, 721, 1116
AclWI	GGATC	2 cut(s)	1200, 1213
AcsI	RAATTY	1 cut(s)	860
AdeI	CACNNNGTG	1 cut(s)	302
AfaI	GTAC	3 cut(s)	972, 1327, 1509
AfiI	CCNNNNNNNGG	2 cut(s)	98, 219
AflIII	ACRYGT	1 cut(s)	1366
AgsI	TTSAA	6 cut(s)	228, 540, 757, 1152, 1257, 1276
AjnI	CCWGG	1 cut(s)	517
Alw26I	GTCTC	2 cut(s)	166, 1088
AlwI	GGATC	2 cut(s)	1200, 1213
AoxI	GGCC	4 cut(s)	267, 274, 602, 1050
ApeKI	GCWGC	3 cut(s)	616, 1010, 1321
ApoI	RAATTY	1 cut(s)	860
Asp718I	GGTACC	1 cut(s)	1507
AspS9I	GGNCC	2 cut(s)	1051, 1250
AsuHPI	GGTGA	3 cut(s)	81, 314, 1244
AvaII	GGWCC	1 cut(s)	1250
BamHI	GGATCC	1 cut(s)	1205
BanI	GGYRCC	2 cut(s)	1481, 1507
BbsI	GAAGAC	1 cut(s)	1044
BbvI	GCAGC	3 cut(s)	628, 1022, 1308
BccI	CCATC	2 cut(s)	1307, 1349
BciT130I	CCWGG	1 cut(s)	519
BciVI	GTATCC	1 cut(s)	1352
BclI	TGATCA	1 cut(s)	609
BcoDI	GTCTC	2 cut(s)	166, 1088
BfaI	CTAG	2 cut(s)	1224, 1463
BfmI	CTRYAG	2 cut(s)	702, 1101
BfuAI	ACCTGC	1 cut(s)	985
BfuI	GTATCC	1 cut(s)	1352
BisI	GCNGC	4 cut(s)	617, 630, 1011, 1322
BlsI	GCNGC	4 cut(s)	618, 631, 1012, 1323
Bme1390I	CCNGG	1 cut(s)	519
Bme18I	GGWCC	1 cut(s)	1250
BmgT120I	GGNCC	2 cut(s)	1051, 1250
BmiI	GGNNCC	4 cut(s)	597, 1207, 1483, 1509
BmrFI	CCNGG	1 cut(s)	519
BmrI	ACTGGG	3 cut(s)	198, 911, 1338
BmsI	GCATC	1 cut(s)	1459
BmuI	ACTGGG	3 cut(s)	198, 911, 1338
BpiI	GAAGAC	1 cut(s)	1044
BsaJI	CCNNGG	3 cut(s)	77, 264, 599
BsaWI	WCCGGW	1 cut(s)	1202
Bsc4I	CCNNNNNNNGG	2 cut(s)	98, 219
Bse1I	ACTGG	7 cut(s)	193, 466, 605, 661, 917, 1333, 1511
Bse3DI	GCAATG	2 cut(s)	448, 1572
BseBI	CCWGG	1 cut(s)	519
BseDI	CCNNGG	3 cut(s)	77, 264, 599
BseGI	GGATG	4 cut(s)	73, 967, 1360, 1450
BseLI	CCNNNNNNNGG	2 cut(s)	98, 219
BseMI	GCAATG	2 cut(s)	448, 1572
BseMII	CTCAG	3 cut(s)	1083, 1446, 1565
BseNI	ACTGG	7 cut(s)	193, 466, 605, 661, 917, 1333, 1511
BseXI	GCAGC	3 cut(s)	628, 1022, 1308
Bsh1236I	CGCG	1 cut(s)	1116
BshFI	GGCC	4 cut(s)	269, 276, 604, 1052
BshNI	GGYRCC	2 cut(s)	1481, 1507
BsiSI	CCGG	1 cut(s)	1203
BslFI	GGGAC	2 cut(s)	664, 1346
BslI	CCNNNNNNNGG	2 cut(s)	98, 219
BsmAI	GTCTC	2 cut(s)	166, 1088
BsmBI	CGTCTC	1 cut(s)	1088
BsmFI	GGGAC	2 cut(s)	664, 1346
BsnI	GGCC	4 cut(s)	269, 276, 604, 1052
Bsp143I	GATC	4 cut(s)	417, 609, 1205, 1375
Bsp19I	CCATGG	2 cut(s)	77, 264
BspACI	CCGC	3 cut(s)	629, 721, 1116
BspANI	GGCC	4 cut(s)	269, 276, 604, 1052
BspCNI	CTCAG	3 cut(s)	1084, 1447, 1564
BspFNI	CGCG	1 cut(s)	1116
BspLI	GGNNCC	4 cut(s)	597, 1207, 1483, 1509
BspMAI	CTGCAG	1 cut(s)	1105
BspMI	ACCTGC	1 cut(s)	985
BspPI	GGATC	2 cut(s)	1200, 1213
BspT107I	GGYRCC	2 cut(s)	1481, 1507
BsrDI	GCAATG	2 cut(s)	448, 1572
BsrI	ACTGG	7 cut(s)	193, 466, 605, 661, 917, 1333, 1511
BssECI	CCNNGG	3 cut(s)	77, 264, 599
BssMI	GATC	4 cut(s)	417, 609, 1205, 1375
BssT1I	CCWWGG	3 cut(s)	77, 264, 599
Bst2UI	CCWGG	1 cut(s)	519
Bst4CI	ACNGT	4 cut(s)	706, 977, 1239, 1541
BstAPI	GCANNNNNTGC	1 cut(s)	452
BstC8I	GCNNGC	2 cut(s)	489, 1179
BstDEI	CTNAG	4 cut(s)	401, 1092, 1455, 1551
BstDSI	CCRYGG	2 cut(s)	77, 264
BstF5I	GGATG	4 cut(s)	73, 967, 1360, 1450
BstFNI	CGCG	1 cut(s)	1116
BstKTI	GATC	4 cut(s)	420, 612, 1208, 1378
BstMAI	GTCTC	2 cut(s)	166, 1088
BstMBI	GATC	4 cut(s)	417, 609, 1205, 1375
BstMWI	GCNNNNNNNGC	3 cut(s)	322, 452, 718
BstNI	CCWGG	1 cut(s)	519
BstNSI	RCATGY	3 cut(s)	450, 1177, 1370
BstSCI	CCNGG	1 cut(s)	517
BstSFI	CTRYAG	2 cut(s)	702, 1101
BstUI	CGCG	1 cut(s)	1116
BstV1I	GCAGC	3 cut(s)	628, 1022, 1308
BstV2I	GAAGAC	1 cut(s)	1044
BstX2I	RGATCY	1 cut(s)	1205
BstXI	CCANNNNNNTGG	1 cut(s)	265
BstYI	RGATCY	1 cut(s)	1205
BsuI	GTATCC	1 cut(s)	1352
BsuRI	GGCC	4 cut(s)	269, 276, 604, 1052
BtgI	CCRYGG	2 cut(s)	77, 264
BtsCI	GGATG	4 cut(s)	73, 967, 1360, 1450
BtsI	GCAGTG	2 cut(s)	412, 624
BtsIMutI	CAGTG	6 cut(s)	186, 412, 612, 624, 1518, 1546
BveI	ACCTGC	1 cut(s)	985
Cac8I	GCNNGC	2 cut(s)	489, 1179
Cfr13I	GGNCC	2 cut(s)	1051, 1250
Csp6I	GTAC	3 cut(s)	971, 1326, 1508
CspCI	CAANNNNNGTGG	2 cut(s)	915, 950
CviQI	GTAC	3 cut(s)	971, 1326, 1508
DdeI	CTNAG	4 cut(s)	401, 1092, 1455, 1551
DpnI	GATC	4 cut(s)	419, 611, 1207, 1377
DpnII	GATC	4 cut(s)	417, 609, 1205, 1375
DraI	TTTAAA	2 cut(s)	901, 990
DraIII	CACNNNGTG	1 cut(s)	302
Eco130I	CCWWGG	3 cut(s)	77, 264, 599
Eco32I	GATATC	1 cut(s)	1561
Eco47I	GGWCC	1 cut(s)	1250
EcoO109I	RGGNCCY	2 cut(s)	1051, 1250
EcoRII	CCWGG	1 cut(s)	517
EcoRV	GATATC	1 cut(s)	1561
EcoT14I	CCWWGG	3 cut(s)	77, 264, 599
EcoT22I	ATGCAT	1 cut(s)	448
ErhI	CCWWGG	3 cut(s)	77, 264, 599
Esp3I	CGTCTC	1 cut(s)	1088
FaqI	GGGAC	2 cut(s)	664, 1346
FbaI	TGATCA	1 cut(s)	609
Fnu4HI	GCNGC	4 cut(s)	617, 630, 1011, 1322
FokI	GGATG	4 cut(s)	60, 974, 1367, 1437
Fsp4HI	GCNGC	4 cut(s)	617, 630, 1011, 1322
FspBI	CTAG	2 cut(s)	1224, 1463
GluI	GCNGC	4 cut(s)	617, 630, 1011, 1322
HaeIII	GGCC	4 cut(s)	269, 276, 604, 1052
HapII	CCGG	1 cut(s)	1203
HincII	GTYRAC	1 cut(s)	1299
HindII	GTYRAC	1 cut(s)	1299
HinfI	GANTC	6 cut(s)	44, 102, 130, 209, 536, 691
HpaII	CCGG	1 cut(s)	1203
HphI	GGTGA	3 cut(s)	81, 314, 1244
Hpy166II	GTNNAC	5 cut(s)	337, 973, 1235, 1299, 1544
Hpy188I	TCNGA	1 cut(s)	1413
Hpy188III	TCNNGA	7 cut(s)	152, 421, 982, 1454, 1528, 1553, 1593
Hpy8I	GTNNAC	5 cut(s)	337, 973, 1235, 1299, 1544
Hpy99I	CGWCG	1 cut(s)	649
HpyAV	CCTTC	2 cut(s)	1064, 1263
HpyCH4III	ACNGT	4 cut(s)	706, 977, 1239, 1541
HpyCH4V	TGCA	8 cut(s)	441, 446, 487, 506, 512, 1103, 1177, 1283
HpyF10VI	GCNNNNNNNGC	3 cut(s)	322, 452, 718
HpyF3I	CTNAG	4 cut(s)	401, 1092, 1455, 1551
KpnI	GGTACC	1 cut(s)	1511
Ksp22I	TGATCA	1 cut(s)	609
Kzo9I	GATC	4 cut(s)	417, 609, 1205, 1375
LmnI	GCTCC	5 cut(s)	601, 1007, 1018, 1171, 1423
Lsp1109I	GCAGC	3 cut(s)	628, 1022, 1308
LweI	GCATC	1 cut(s)	1459
MaeI	CTAG	2 cut(s)	1224, 1463
MaeIII	GTNAC	5 cut(s)	382, 904, 1242, 1268, 1474
MalI	GATC	4 cut(s)	419, 611, 1207, 1377
MboI	GATC	4 cut(s)	417, 609, 1205, 1375
MboII	GAAGA	4 cut(s)	769, 1049, 1140, 1568
MfeI	CAATTG	3 cut(s)	507, 1152, 1302
MflI	RGATCY	1 cut(s)	1205
MluCI	AATT	7 cut(s)	328, 482, 507, 860, 1152, 1257, 1302
MmeI	TCCRAC	3 cut(s)	513, 799, 1450
Mph1103I	ATGCAT	1 cut(s)	448
MseI	TTAA	8 cut(s)	26, 432, 576, 870, 900, 944, 989, 1122
MslI	CAYNNNNRTG	3 cut(s)	123, 1371, 1539
MspI	CCGG	1 cut(s)	1203
MspR9I	CCNGG	1 cut(s)	519
MunI	CAATTG	3 cut(s)	507, 1152, 1302
MvaI	CCWGG	1 cut(s)	519
MvnI	CGCG	1 cut(s)	1116
MwoI	GCNNNNNNNGC	3 cut(s)	322, 452, 718
NcoI	CCATGG	2 cut(s)	77, 264
NdeII	GATC	4 cut(s)	417, 609, 1205, 1375
NlaIV	GGNNCC	4 cut(s)	597, 1207, 1483, 1509
NsiI	ATGCAT	1 cut(s)	448
NspI	RCATGY	3 cut(s)	450, 1177, 1370
PciI	ACATGT	1 cut(s)	1366
PfeI	GAWTC	6 cut(s)	44, 102, 130, 209, 536, 691
PflFI	GACNNNGTC	1 cut(s)	259
PfoI	TCCNGGA	1 cut(s)	517
PkrI	GCNGC	4 cut(s)	618, 631, 1012, 1323
PpuMI	RGGWCCY	1 cut(s)	1250
PscI	ACATGT	1 cut(s)	1366
PsiI	TTATAA	1 cut(s)	851
Psp5II	RGGWCCY	1 cut(s)	1250
Psp6I	CCWGG	1 cut(s)	517
PspGI	CCWGG	1 cut(s)	517
PspN4I	GGNNCC	4 cut(s)	597, 1207, 1483, 1509
PspPI	GGNCC	2 cut(s)	1051, 1250
PspPPI	RGGWCCY	1 cut(s)	1250
PsrI	GAACNNNNNNTAC	2 cut(s)	1227, 1259
PstI	CTGCAG	1 cut(s)	1105
PsuI	RGATCY	1 cut(s)	1205
PsyI	GACNNNGTC	1 cut(s)	259
RsaI	GTAC	3 cut(s)	972, 1327, 1509
RsaNI	GTAC	3 cut(s)	971, 1326, 1508
RseI	CAYNNNNRTG	3 cut(s)	123, 1371, 1539
SaqAI	TTAA	8 cut(s)	26, 432, 576, 870, 900, 944, 989, 1122
SatI	GCNGC	4 cut(s)	617, 630, 1011, 1322
Sau3AI	GATC	4 cut(s)	417, 609, 1205, 1375
Sau96I	GGNCC	2 cut(s)	1051, 1250
ScrFI	CCNGG	1 cut(s)	519
SfaNI	GCATC	1 cut(s)	1459
SfcI	CTRYAG	2 cut(s)	702, 1101
SinI	GGWCC	1 cut(s)	1250
SmiMI	CAYNNNNRTG	3 cut(s)	123, 1371, 1539
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
Sse9I	AATT	7 cut(s)	328, 482, 507, 860, 1152, 1257, 1302
SsiI	CCGC	3 cut(s)	629, 721, 1116
SspI	AATATT	2 cut(s)	933, 1145
SspMI	CTAG	2 cut(s)	1224, 1463
StyD4I	CCNGG	1 cut(s)	517
StyI	CCWWGG	3 cut(s)	77, 264, 599
TaaI	ACNGT	4 cut(s)	706, 977, 1239, 1541
TaqI	TCGA	2 cut(s)	749, 839
TasI	AATT	7 cut(s)	328, 482, 507, 860, 1152, 1257, 1302
TauI	GCSGC	1 cut(s)	632
TfiI	GAWTC	6 cut(s)	44, 102, 130, 209, 536, 691
Tru1I	TTAA	8 cut(s)	26, 432, 576, 870, 900, 944, 989, 1122
Tru9I	TTAA	8 cut(s)	26, 432, 576, 870, 900, 944, 989, 1122
TscAI	CASTG	6 cut(s)	193, 412, 612, 631, 1518, 1546
TseI	GCWGC	3 cut(s)	616, 1010, 1321
TspDTI	ATGAA	5 cut(s)	57, 157, 407, 483, 1040
TspRI	CASTG	6 cut(s)	193, 412, 612, 631, 1518, 1546
Tth111I	GACNNNGTC	1 cut(s)	259
VpaK11BI	GGWCC	1 cut(s)	1250
XapI	RAATTY	1 cut(s)	860
XceI	RCATGY	3 cut(s)	450, 1177, 1370
XcmI	CCANNNNNNNNNTGG	1 cut(s)	352
XspI	CTAG	2 cut(s)	1224, 1463
Zsp2I	ATGCAT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.