Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0005432

Physical Location & Seq

Genomic Coordinates Forward (+)

13958976 .. 13959450

Gene Structure 475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0167400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGCGTCAAAGTCTATAGCTTTCTTTCTGGTTTTGGTTGTGGCTACCTGCAGCCTGGTGCTGATCATAGATGTAGAAGCTGCCGCTGATTGCAAGCTCTCAAATCTCGGTTGCTTTCCTGCTGAGGGTGCTGTTACTCTTGAGAGTACTCGCAACAGAAAGATGGTTGCTGGTCTAAAAGAGAAGAAGGAGCTGCTTGTTGGTGGTACATTGAGGAAGGTTCCATCTGGTCCGGATCCACTTCACCACAATGGGAATGCCCCCAAGAAGCCTCGCACTGATCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009987 GO:0016405 GO:0016874 GO:0016877 GO:0042180 GO:0042181 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

95

Amino Acids

10.05

Weight (kDa)

9.18

Isoelectric Point (pI)

21.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19010
fragaria_vesca	FvH4_5g23550
malus_domestica	MD14G1050700.v1.1
prunus_persica	Prupe.7G085200_v2.0.a1 Prupe.8G160600_v2.0.a1
pyrus_communis	pycom12g04570 pycom14g04200
rosa_chinensis	RchiOBHm_Chr3g0478721 RchiOBHm_Chr7g0212861
rosa_laevigata	RLG00000002864 RLG00000023630
rosa_multiflora	Rmu_sc0000394.1_g000050 Rmu_sc0001519.1_g000013
rosa_roxburghii	Rroxscaffold_3G00246500 Rroxscaffold_6G00403160
rosa_rugosa	Rorug03G0167300 Rorug03G0167400 Rorug07G0137100
rosa_samantha	Rh3AG219500 Rh3BG251200 Rh3CG248100 Rh3CG248200 Rh3DG244500 Rh7BG264300 Rh7CG287700 Rh7DG276800
rosa_wichuraiana	Rw3G019720 Rw7G023220 Rw7G023340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	56
AccIII	TCCGGA	1 cut(s)	232
AciI	CCGC	1 cut(s)	84
AclWI	GGATC	3 cut(s)	230, 243, 275
AcyI	GRCGYC	1 cut(s)	5
AfaI	GTAC	2 cut(s)	148, 208
AfiI	CCNNNNNNNGG	1 cut(s)	125
AjnI	CCWGG	1 cut(s)	54
AluBI	AGCT	4 cut(s)	20, 80, 97, 193
AluI	AGCT	4 cut(s)	20, 80, 97, 193
AlwI	GGATC	3 cut(s)	230, 243, 275
Aor13HI	TCCGGA	1 cut(s)	232
ApeKI	GCWGC	3 cut(s)	51, 80, 193
AspS9I	GGNCC	1 cut(s)	230
AsuHPI	GGTGA	1 cut(s)	236
AvaII	GGWCC	1 cut(s)	230
BamHI	GGATCC	1 cut(s)	235
BbvCI	CCTCAGC	1 cut(s)	123
BbvI	GCAGC	3 cut(s)	63, 67, 180
BccI	CCATC	2 cut(s)	157, 232
BciT130I	CCWGG	1 cut(s)	56
BclI	TGATCA	1 cut(s)	63
BfmI	CTRYAG	2 cut(s)	15, 49
BfuAI	ACCTGC	1 cut(s)	56
BisI	GCNGC	4 cut(s)	52, 81, 84, 194
BlsI	GCNGC	4 cut(s)	53, 82, 85, 195
BmcAI	AGTACT	1 cut(s)	148
Bme1390I	CCNGG	1 cut(s)	56
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	1 cut(s)	230
BmiI	GGNNCC	2 cut(s)	222, 237
BmrFI	CCNGG	1 cut(s)	56
Bpu10I	CCTNAGC	1 cut(s)	123
BpuEI	CTTGAG	1 cut(s)	161
BsaHI	GRCGYC	1 cut(s)	5
BsaWI	WCCGGW	1 cut(s)	232
Bsc4I	CCNNNNNNNGG	1 cut(s)	125
BseAI	TCCGGA	1 cut(s)	232
BseBI	CCWGG	1 cut(s)	56
BseLI	CCNNNNNNNGG	1 cut(s)	125
BseMII	CTCAG	1 cut(s)	114
BseXI	GCAGC	3 cut(s)	63, 67, 180
BsiSI	CCGG	1 cut(s)	233
BslI	CCNNNNNNNGG	1 cut(s)	125
BsmI	GAATGC	1 cut(s)	262
Bsp13I	TCCGGA	1 cut(s)	232
Bsp143I	GATC	3 cut(s)	63, 235, 280
BspACI	CCGC	1 cut(s)	84
BspCNI	CTCAG	1 cut(s)	115
BspEI	TCCGGA	1 cut(s)	232
BspLI	GGNNCC	2 cut(s)	222, 237
BspMAI	CTGCAG	1 cut(s)	53
BspMI	ACCTGC	1 cut(s)	56
BspPI	GGATC	3 cut(s)	230, 243, 275
BssMI	GATC	3 cut(s)	63, 235, 280
BssNI	GRCGYC	1 cut(s)	5
Bst2UI	CCWGG	1 cut(s)	56
BstACI	GRCGYC	1 cut(s)	5
BstC8I	GCNNGC	1 cut(s)	95
BstDEI	CTNAG	1 cut(s)	123
BstKTI	GATC	3 cut(s)	66, 238, 283
BstMBI	GATC	3 cut(s)	63, 235, 280
BstMWI	GCNNNNNNNGC	1 cut(s)	128
BstNI	CCWGG	1 cut(s)	56
BstSCI	CCNGG	1 cut(s)	54
BstSFI	CTRYAG	2 cut(s)	15, 49
BstV1I	GCAGC	3 cut(s)	63, 67, 180
BstX2I	RGATCY	1 cut(s)	235
BstYI	RGATCY	1 cut(s)	235
BtsIMutI	CAGTG	1 cut(s)	276
BveI	ACCTGC	1 cut(s)	56
Cac8I	GCNNGC	1 cut(s)	95
Cfr13I	GGNCC	1 cut(s)	230
Csp6I	GTAC	2 cut(s)	147, 207
CviJI	RGCY	7 cut(s)	20, 44, 54, 80, 97, 193, 271
CviKI_1	RGCY	7 cut(s)	20, 44, 54, 80, 97, 193, 271
CviQI	GTAC	2 cut(s)	147, 207
DdeI	CTNAG	1 cut(s)	123
DpnI	GATC	3 cut(s)	65, 237, 282
DpnII	GATC	3 cut(s)	63, 235, 280
Eco47I	GGWCC	1 cut(s)	230
EcoRII	CCWGG	1 cut(s)	54
FaiI	YATR	2 cut(s)	17, 68
FbaI	TGATCA	1 cut(s)	63
Fnu4HI	GCNGC	4 cut(s)	52, 81, 84, 194
Fsp4HI	GCNGC	4 cut(s)	52, 81, 84, 194
GluI	GCNGC	4 cut(s)	52, 81, 84, 194
HapII	CCGG	1 cut(s)	233
Hin1I	GRCGYC	1 cut(s)	5
HpaII	CCGG	1 cut(s)	233
HphI	GGTGA	1 cut(s)	236
Hpy188III	TCNNGA	2 cut(s)	140, 233
HpyAV	CCTTC	2 cut(s)	181, 211
HpyCH4V	TGCA	2 cut(s)	51, 93
HpyF10VI	GCNNNNNNNGC	1 cut(s)	128
HpyF3I	CTNAG	1 cut(s)	123
Hsp92I	GRCGYC	1 cut(s)	5
Kpn2I	TCCGGA	1 cut(s)	232
Ksp22I	TGATCA	1 cut(s)	63
Kzo9I	GATC	3 cut(s)	63, 235, 280
LmnI	GCTCC	1 cut(s)	190
LpnPI	CCDG	8 cut(s)	14, 41, 61, 68, 132, 156, 213, 246
Lsp1109I	GCAGC	3 cut(s)	63, 67, 180
MaeIII	GTNAC	1 cut(s)	133
MalI	GATC	3 cut(s)	65, 237, 282
MboI	GATC	3 cut(s)	63, 235, 280
MboII	GAAGA	1 cut(s)	196
MflI	RGATCY	1 cut(s)	235
MnlI	CCTC	3 cut(s)	118, 207, 282
MroI	TCCGGA	1 cut(s)	232
MslI	CAYNNNNRTG	1 cut(s)	249
MspA1I	CMGCKG	1 cut(s)	86
MspI	CCGG	1 cut(s)	233
MspR9I	CCNGG	1 cut(s)	56
Mva1269I	GAATGC	1 cut(s)	262
MvaI	CCWGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	1 cut(s)	128
NdeII	GATC	3 cut(s)	63, 235, 280
NlaIV	GGNNCC	2 cut(s)	222, 237
PctI	GAATGC	1 cut(s)	262
PkrI	GCNGC	4 cut(s)	53, 82, 85, 195
Psp6I	CCWGG	1 cut(s)	54
PspGI	CCWGG	1 cut(s)	54
PspN4I	GGNNCC	2 cut(s)	222, 237
PspPI	GGNCC	1 cut(s)	230
PstI	CTGCAG	1 cut(s)	53
PsuI	RGATCY	1 cut(s)	235
RsaI	GTAC	2 cut(s)	148, 208
RsaNI	GTAC	2 cut(s)	147, 207
RseI	CAYNNNNRTG	1 cut(s)	249
SatI	GCNGC	4 cut(s)	52, 81, 84, 194
Sau3AI	GATC	3 cut(s)	63, 235, 280
Sau96I	GGNCC	1 cut(s)	230
ScaI	AGTACT	1 cut(s)	148
ScrFI	CCNGG	1 cut(s)	56
SetI	ASST	6 cut(s)	22, 50, 82, 99, 195, 222
SfcI	CTRYAG	2 cut(s)	15, 49
SinI	GGWCC	1 cut(s)	230
SmiMI	CAYNNNNRTG	1 cut(s)	249
SmlI	CTYRAG	1 cut(s)	140
SmoI	CTYRAG	1 cut(s)	140
SsiI	CCGC	1 cut(s)	84
StyD4I	CCNGG	1 cut(s)	54
TatI	WGTACW	1 cut(s)	146
TauI	GCSGC	1 cut(s)	86
TscAI	CASTG	1 cut(s)	283
TseI	GCWGC	3 cut(s)	51, 80, 193
TspRI	CASTG	1 cut(s)	283
VpaK11BI	GGWCC	1 cut(s)	230
ZrmI	AGTACT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.