Rw7G023220

4-coumarate--CoA ligase-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
Physical Location & Seq
Reverse (-)
27831064 .. 27834490
3427 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G023220.1

Sequence Viewer

Length: 1662 bp
ATGGCTAAAACCTCAAGCAACAGCTTAAACCCTGAAAAGCATGAATCTTTGGCTACCCAACAACAACAACAACATCATCCATGGTGGTTTTCACCAGATACAGGAATCTACCACAGCAAACACCCCAATGTTAATCTCCCCACAAACCCTTTTCTTGATGTTTCTTTGATTGATTCCTCATCTGGGTTTTCAATATCTTACTCAAAGCTCTATTCTTTGACCAAGTCCATGGCCTCTGGCCTCAACAAAATGGGTGTTTCACAAGGTGATGTTGTTCTGCTTCTTTTGCCTAATTCTGTTTACTATCCCATTGTTTTCTTGGGTGTTTTGTATATTGGTGCTGTTGTTACAACCATGAACCCTCTAAGCAGTGTGGTAGAGATCAAGAAACAGATTAAGGATTGCAATGCATGTTTTGCTTTTACGGGATATGAAAATGTTGATAAATTGCAAGCATTGGGTATTCCTGCAATTGCAGTTCCAGGAAACGTAGTGTTGGATTCAAATAAAGAACTGTTTTCAGTTTTTTATGAGCTTGTTAATAGTGAATTTGATCTGGCTTCAAGGCCAGTGATCATGCAGCAAGATACTGCGGCGATATTGTATTCGTCAGGGACTACTGGTGTGAGTAAGGGTGTTTTGCTAACACATGGGAATCTCATAGCTACAGTTGAGCTTTTTGTGCGGTTTGAGGCTTCACAATATGAGTATTCGAGCTTGAAGAATGTGTATTTATCTGTTCTGCCATTGTTTCACATATACGGGTTGGCACTTATAGTGGTTGGATTATTGTCTTTGGGGTCGAGGATTGTTATAATGAAGAAATTTGATATTAATGAGGTGGTCAAGGCAATTGATAGGTATAAAGTAACGCACTTCCCAGTTGTTCCACCAATATTGACAGCATTAACAAAAATAGTAGAGGATGTTGGGGCACACAGTCTCCAGAGTTTAAAGCAGGTTTCTTGTGGAGCAGCTCCTTTGAGCATGAAACTCATAGAAGACTTCGTTCAGGCCCTTCCTCATGTTGATTTTATTCAGGGATATGGCATGACTGAGACGACTGCAGTAGGAACTCGCGGTTTCAATACTGAAAAGATTAGGAAATATTCTTCAATTGGACTTTTAGCTCCAAACATGCAAGCTAAAGTGGTAGATTGGAATACCGGATCATTTTTGCCTCCAGCTAGTATTGGTGAACTGTGGTTACGAGGACCTTCAATTATGAAAGGTTACTTGAATAATGCAAGGGCAACTATGTCAACAATTGATAATGATGGTTGGCTGCATACTGGGGACATCAGTTATTTTGATGAGGACGGATACTTACATGTATGTGATCGCATAAAGGAGATTATCAAATACAAGGGATTTCAGATTGCTCCTGCTGATTTAGAAGCTGTGTTGATTTCGCATCCTGAGATACTAGATGTTGGAGTTACAGGTGCCACCGATGAGGAATGTGGAGAGGTACCAGTGGCATTTGTCGTCAGGAAGCATGACAGTGAACTTTCTCAGGAAGATATCATGGATTACGTTGCCCGACAGGTTTCTCCACACAAGAAGGTCCGAAAGGTAGTGTTTACACATTCAATTCCAAGATCTGCAGCAGGGAAGATCCTCCGAAGGGAGCTCAGGAATTTCTTGGCTTCTAGATTGTAG

Protein Analysis

553

Amino Acids

60.93

Weight (kDa)

6.47

Isoelectric Point (pI)

36.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMP-binding PF00501 56 - 413 2.8e-86 AMP-binding enzyme
AMP-binding_C PF13193 465 - 539 5.8e-17 AMP-binding enzyme C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 815
Acc36I ACCTGC 1 cut(s) 949
Acc65I GGTACC 1 cut(s) 1471
AccB1I GGYRCC 2 cut(s) 1445, 1471
AccII CGCG 1 cut(s) 1080
AciI CCGC 3 cut(s) 593, 685, 1080
AclWI GGATC 2 cut(s) 1177, 1612
AcsI RAATTY 3 cut(s) 548, 824, 1639
AdeI CACNNNGTG 1 cut(s) 266
AfaI GTAC 1 cut(s) 1473
AfiI CCNNNNNNNGG 3 cut(s) 101, 183, 1627
AflIII ACRYGT 1 cut(s) 1330
AgsI TTSAA 9 cut(s) 192, 504, 564, 721, 1087, 1116, 1221, 1240, 1593
AjnI CCWGG 1 cut(s) 481
Alw21I GWGCWC 1 cut(s) 1635
Alw26I GTCTC 2 cut(s) 947, 1052
AlwI GGATC 2 cut(s) 1177, 1612
AoxI GGCC 4 cut(s) 231, 238, 566, 1014
ApeKI GCWGC 4 cut(s) 580, 974, 1285, 1607
ApoI RAATTY 3 cut(s) 548, 824, 1639
AseI ATTAAT 1 cut(s) 834
Asp718I GGTACC 1 cut(s) 1471
AspS9I GGNCC 3 cut(s) 1015, 1214, 1567
AsuHPI GGTGA 3 cut(s) 84, 278, 1208
AvaII GGWCC 2 cut(s) 1214, 1567
BaeGI GKGCMC 1 cut(s) 937
BanI GGYRCC 2 cut(s) 1445, 1471
BanII GRGCYC 1 cut(s) 1635
BbsI GAAGAC 1 cut(s) 1008
Bbv12I GWGCWC 1 cut(s) 1635
BbvI GCAGC 4 cut(s) 592, 986, 1272, 1619
BccI CCATC 1 cut(s) 1271
BciT130I CCWGG 1 cut(s) 483
BciVI GTATCC 1 cut(s) 1316
BclI TGATCA 1 cut(s) 573
BcoDI GTCTC 2 cut(s) 947, 1052
BfaI CTAG 3 cut(s) 1188, 1427, 1653
BfmI CTRYAG 3 cut(s) 666, 1065, 1605
BfuAI ACCTGC 1 cut(s) 949
BfuI GTATCC 1 cut(s) 1316
BglII AGATCT 1 cut(s) 1601
BisI GCNGC 5 cut(s) 581, 594, 975, 1286, 1608
BlsI GCNGC 5 cut(s) 582, 595, 976, 1287, 1609
Bme1390I CCNGG 1 cut(s) 483
Bme18I GGWCC 2 cut(s) 1214, 1567
BmgT120I GGNCC 3 cut(s) 1015, 1214, 1567
BmiI GGNNCC 2 cut(s) 1447, 1473
BmrFI CCNGG 1 cut(s) 483
BmrI ACTGGG 2 cut(s) 875, 1302
BmsI GCATC 1 cut(s) 1423
BmuI ACTGGG 2 cut(s) 875, 1302
BpiI GAAGAC 1 cut(s) 1008
BpmI CTGGAG 2 cut(s) 929, 1167
Bpu10I CCTNAGC 1 cut(s) 1634
BsaJI CCNNGG 2 cut(s) 80, 228
BsaWI WCCGGW 1 cut(s) 1166
BsaXI ACNNNNNCTCC 2 cut(s) 927, 957
Bsc4I CCNNNNNNNGG 3 cut(s) 101, 183, 1627
Bse1I ACTGG 5 cut(s) 569, 625, 881, 1297, 1475
Bse3DI GCAATG 1 cut(s) 412
BseBI CCWGG 1 cut(s) 483
BseDI CCNNGG 2 cut(s) 80, 228
BseGI GGATG 3 cut(s) 76, 931, 1414
BseLI CCNNNNNNNGG 3 cut(s) 101, 183, 1627
BseMI GCAATG 1 cut(s) 412
BseMII CTCAG 4 cut(s) 1047, 1410, 1529, 1648
BseNI ACTGG 5 cut(s) 569, 625, 881, 1297, 1475
BseSI GKGCMC 1 cut(s) 937
BseXI GCAGC 4 cut(s) 592, 986, 1272, 1619
Bsh1236I CGCG 1 cut(s) 1080
BshFI GGCC 4 cut(s) 233, 240, 568, 1016
BshNI GGYRCC 2 cut(s) 1445, 1471
BsiHKAI GWGCWC 1 cut(s) 1635
BsiSI CCGG 1 cut(s) 1167
BslFI GGGAC 2 cut(s) 628, 1310
BslI CCNNNNNNNGG 3 cut(s) 101, 183, 1627
BsmAI GTCTC 2 cut(s) 947, 1052
BsmBI CGTCTC 1 cut(s) 1052
BsmFI GGGAC 2 cut(s) 628, 1310
BsnI GGCC 4 cut(s) 233, 240, 568, 1016
Bsp1286I GDGCHC 2 cut(s) 937, 1635
Bsp143I GATC 7 cut(s) 381, 553, 573, 1169, 1339, 1601, 1617
Bsp19I CCATGG 2 cut(s) 80, 228
BspACI CCGC 3 cut(s) 593, 685, 1080
BspANI GGCC 4 cut(s) 233, 240, 568, 1016
BspCNI CTCAG 4 cut(s) 1048, 1411, 1528, 1647
BspFNI CGCG 1 cut(s) 1080
BspLI GGNNCC 2 cut(s) 1447, 1473
BspMAI CTGCAG 2 cut(s) 1069, 1609
BspMI ACCTGC 1 cut(s) 949
BspPI GGATC 2 cut(s) 1177, 1612
BspT107I GGYRCC 2 cut(s) 1445, 1471
BsrDI GCAATG 1 cut(s) 412
BsrI ACTGG 5 cut(s) 569, 625, 881, 1297, 1475
BssECI CCNNGG 2 cut(s) 80, 228
BssMI GATC 7 cut(s) 381, 553, 573, 1169, 1339, 1601, 1617
BssT1I CCWWGG 2 cut(s) 80, 228
Bst2UI CCWGG 1 cut(s) 483
Bst4CI ACNGT 5 cut(s) 516, 670, 941, 1203, 1505
BstAPI GCANNNNNTGC 1 cut(s) 416
BstC8I GCNNGC 2 cut(s) 453, 1143
BstDEI CTNAG 5 cut(s) 365, 1056, 1419, 1515, 1634
BstDSI CCRYGG 2 cut(s) 80, 228
BstF5I GGATG 3 cut(s) 76, 931, 1414
BstFNI CGCG 1 cut(s) 1080
BstKTI GATC 7 cut(s) 384, 556, 576, 1172, 1342, 1604, 1620
BstMAI GTCTC 2 cut(s) 947, 1052
BstMBI GATC 7 cut(s) 381, 553, 573, 1169, 1339, 1601, 1617
BstMWI GCNNNNNNNGC 3 cut(s) 286, 416, 682
BstNI CCWGG 1 cut(s) 483
BstNSI RCATGY 3 cut(s) 414, 1141, 1334
BstSCI CCNGG 1 cut(s) 481
BstSFI CTRYAG 3 cut(s) 666, 1065, 1605
BstSLI GKGCMC 1 cut(s) 937
BstUI CGCG 1 cut(s) 1080
BstV1I GCAGC 4 cut(s) 592, 986, 1272, 1619
BstV2I GAAGAC 1 cut(s) 1008
BstX2I RGATCY 2 cut(s) 1601, 1617
BstXI CCANNNNNNTGG 1 cut(s) 229
BstYI RGATCY 2 cut(s) 1601, 1617
BsuI GTATCC 1 cut(s) 1316
BsuRI GGCC 4 cut(s) 233, 240, 568, 1016
BtgI CCRYGG 2 cut(s) 80, 228
BtsCI GGATG 3 cut(s) 76, 931, 1414
BtsI GCAGTG 1 cut(s) 376
BtsIMutI CAGTG 4 cut(s) 376, 576, 1482, 1510
BveI ACCTGC 1 cut(s) 949
Cac8I GCNNGC 2 cut(s) 453, 1143
Cfr13I GGNCC 3 cut(s) 1015, 1214, 1567
Csp6I GTAC 1 cut(s) 1472
CspCI CAANNNNNGTGG 2 cut(s) 879, 914
CviQI GTAC 1 cut(s) 1472
DdeI CTNAG 5 cut(s) 365, 1056, 1419, 1515, 1634
DpnI GATC 7 cut(s) 383, 555, 575, 1171, 1341, 1603, 1619
DpnII GATC 7 cut(s) 381, 553, 573, 1169, 1339, 1601, 1617
DraI TTTAAA 1 cut(s) 954
DraIII CACNNNGTG 1 cut(s) 266
Ecl136II GAGCTC 1 cut(s) 1633
Eco130I CCWWGG 2 cut(s) 80, 228
Eco24I GRGCYC 1 cut(s) 1635
Eco32I GATATC 1 cut(s) 1525
Eco47I GGWCC 2 cut(s) 1214, 1567
Eco53kI GAGCTC 1 cut(s) 1633
EcoICRI GAGCTC 1 cut(s) 1633
EcoO109I RGGNCCY 2 cut(s) 1015, 1214
EcoRII CCWGG 1 cut(s) 481
EcoRV GATATC 1 cut(s) 1525
EcoT14I CCWWGG 2 cut(s) 80, 228
EcoT22I ATGCAT 1 cut(s) 412
EcoT38I GRGCYC 1 cut(s) 1635
ErhI CCWWGG 2 cut(s) 80, 228
Esp3I CGTCTC 1 cut(s) 1052
FaqI GGGAC 2 cut(s) 628, 1310
FbaI TGATCA 1 cut(s) 573
Fnu4HI GCNGC 5 cut(s) 581, 594, 975, 1286, 1608
FokI GGATG 3 cut(s) 63, 938, 1401
FriOI GRGCYC 1 cut(s) 1635
Fsp4HI GCNGC 5 cut(s) 581, 594, 975, 1286, 1608
FspBI CTAG 3 cut(s) 1188, 1427, 1653
GluI GCNGC 5 cut(s) 581, 594, 975, 1286, 1608
GsuI CTGGAG 2 cut(s) 929, 1167
HaeIII GGCC 4 cut(s) 233, 240, 568, 1016
HapII CCGG 1 cut(s) 1167
HincII GTYRAC 1 cut(s) 1263
HindII GTYRAC 1 cut(s) 1263
HinfI GANTC 5 cut(s) 44, 105, 173, 500, 655
HpaII CCGG 1 cut(s) 1167
HphI GGTGA 3 cut(s) 84, 278, 1208
Hpy166II GTNNAC 5 cut(s) 301, 1199, 1263, 1508, 1584
Hpy188I TCNGA 3 cut(s) 1377, 1571, 1625
Hpy188III TCNNGA 8 cut(s) 155, 385, 946, 1418, 1492, 1517, 1636, 1653
Hpy8I GTNNAC 5 cut(s) 301, 1199, 1263, 1508, 1584
HpyAV CCTTC 4 cut(s) 1028, 1227, 1558, 1620
HpyCH4III ACNGT 5 cut(s) 516, 670, 941, 1203, 1505
HpyCH4IV ACGT 2 cut(s) 489, 1536
HpyF10VI GCNNNNNNNGC 3 cut(s) 286, 416, 682
HpyF3I CTNAG 5 cut(s) 365, 1056, 1419, 1515, 1634
HpySE526I ACGT 2 cut(s) 489, 1536
KpnI GGTACC 1 cut(s) 1475
Ksp22I TGATCA 1 cut(s) 573
Kzo9I GATC 7 cut(s) 381, 553, 573, 1169, 1339, 1601, 1617
LmnI GCTCC 5 cut(s) 971, 982, 1135, 1387, 1630
Lsp1109I GCAGC 4 cut(s) 592, 986, 1272, 1619
LweI GCATC 1 cut(s) 1423
MaeI CTAG 3 cut(s) 1188, 1427, 1653
MaeII ACGT 2 cut(s) 489, 1536
MaeIII GTNAC 5 cut(s) 346, 868, 1206, 1232, 1438
MalI GATC 7 cut(s) 383, 555, 575, 1171, 1341, 1603, 1619
MboI GATC 7 cut(s) 381, 553, 573, 1169, 1339, 1601, 1617
MboII GAAGA 6 cut(s) 733, 832, 1013, 1104, 1532, 1627
MfeI CAATTG 4 cut(s) 471, 852, 1116, 1266
MflI RGATCY 2 cut(s) 1601, 1617
MhlI GDGCHC 2 cut(s) 937, 1635
MmeI TCCRAC 3 cut(s) 477, 763, 1414
Mph1103I ATGCAT 1 cut(s) 412
MseI TTAA 7 cut(s) 26, 132, 396, 540, 834, 908, 953
MslI CAYNNNNRTG 3 cut(s) 126, 1335, 1503
MspI CCGG 1 cut(s) 1167
MspR9I CCNGG 1 cut(s) 483
MunI CAATTG 4 cut(s) 471, 852, 1116, 1266
MvaI CCWGG 1 cut(s) 483
MvnI CGCG 1 cut(s) 1080
MwoI GCNNNNNNNGC 3 cut(s) 286, 416, 682
NcoI CCATGG 2 cut(s) 80, 228
NdeII GATC 7 cut(s) 381, 553, 573, 1169, 1339, 1601, 1617
NlaIV GGNNCC 2 cut(s) 1447, 1473
NsiI ATGCAT 1 cut(s) 412
NspI RCATGY 3 cut(s) 414, 1141, 1334
PciI ACATGT 1 cut(s) 1330
PfeI GAWTC 5 cut(s) 44, 105, 173, 500, 655
PflFI GACNNNGTC 1 cut(s) 223
PfoI TCCNGGA 1 cut(s) 481
PkrI GCNGC 5 cut(s) 582, 595, 976, 1287, 1609
PpuMI RGGWCCY 1 cut(s) 1214
PscI ACATGT 1 cut(s) 1330
PshBI ATTAAT 1 cut(s) 834
PsiI TTATAA 1 cut(s) 815
Psp124BI GAGCTC 1 cut(s) 1635
Psp5II RGGWCCY 1 cut(s) 1214
Psp6I CCWGG 1 cut(s) 481
PspGI CCWGG 1 cut(s) 481
PspN4I GGNNCC 2 cut(s) 1447, 1473
PspPI GGNCC 3 cut(s) 1015, 1214, 1567
PspPPI RGGWCCY 1 cut(s) 1214
PsrI GAACNNNNNNTAC 2 cut(s) 1191, 1223
PstI CTGCAG 2 cut(s) 1069, 1609
PsuI RGATCY 2 cut(s) 1601, 1617
PsyI GACNNNGTC 1 cut(s) 223
RsaI GTAC 1 cut(s) 1473
RsaNI GTAC 1 cut(s) 1472
RseI CAYNNNNRTG 3 cut(s) 126, 1335, 1503
SacI GAGCTC 1 cut(s) 1635
SaqAI TTAA 7 cut(s) 26, 132, 396, 540, 834, 908, 953
SatI GCNGC 5 cut(s) 581, 594, 975, 1286, 1608
Sau3AI GATC 7 cut(s) 381, 553, 573, 1169, 1339, 1601, 1617
Sau96I GGNCC 3 cut(s) 1015, 1214, 1567
ScrFI CCNGG 1 cut(s) 483
SduI GDGCHC 2 cut(s) 937, 1635
SfaNI GCATC 1 cut(s) 1423
SfcI CTRYAG 3 cut(s) 666, 1065, 1605
SinI GGWCC 2 cut(s) 1214, 1567
SmiMI CAYNNNNRTG 3 cut(s) 126, 1335, 1503
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
SsiI CCGC 3 cut(s) 593, 685, 1080
SspI AATATT 2 cut(s) 897, 1109
SspMI CTAG 3 cut(s) 1188, 1427, 1653
SstI GAGCTC 1 cut(s) 1635
StyD4I CCNGG 1 cut(s) 481
StyI CCWWGG 2 cut(s) 80, 228
TaaI ACNGT 5 cut(s) 516, 670, 941, 1203, 1505
TaiI ACGT 2 cut(s) 492, 1539
TaqI TCGA 2 cut(s) 713, 803
TauI GCSGC 1 cut(s) 596
TfiI GAWTC 5 cut(s) 44, 105, 173, 500, 655
Tru1I TTAA 7 cut(s) 26, 132, 396, 540, 834, 908, 953
Tru9I TTAA 7 cut(s) 26, 132, 396, 540, 834, 908, 953
TscAI CASTG 4 cut(s) 376, 576, 1482, 1510
TseI GCWGC 4 cut(s) 580, 974, 1285, 1607
TspDTI ATGAA 6 cut(s) 57, 371, 447, 833, 1004, 1241
TspGWI ACGGA 1 cut(s) 1335
TspRI CASTG 4 cut(s) 376, 576, 1482, 1510
Tth111I GACNNNGTC 1 cut(s) 223
VpaK11BI GGWCC 2 cut(s) 1214, 1567
VspI ATTAAT 1 cut(s) 834
XapI RAATTY 3 cut(s) 548, 824, 1639
XbaI TCTAGA 1 cut(s) 1652
XceI RCATGY 3 cut(s) 414, 1141, 1334
XcmI CCANNNNNNNNNTGG 1 cut(s) 316
XspI CTAG 3 cut(s) 1188, 1427, 1653
Zsp2I ATGCAT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.