Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0005432

Physical Location & Seq

Genomic Coordinates Forward (+)

25584875 .. 25585310

Gene Structure 436 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00403160.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ATGAAAGAGTACTTGAACAGTGCAAAGGCAACCATGCATGGCTTTCAGATTACCCCGGCAGATTTAGAAGCTGTGCTGATTAAACATCCTGAGATAGTAGATGTTGCAGTAACAGCAGCCATGGATGAAGAATGTGGAGAGGTGCCAGTGGCGTTTGTGGTTAGGAAAAATGGCAGTAAACTTTCCCGCAAAGCTGTAATGGATTACGTTGCTGGACATGTTGCTCCACACAAGAAGCTGAGGAAGGTGGTGTTTACAAGTTCGATATCGAAATCTGCAGCTGGAAAGATTCTCAGAAGGGAGCTTAGGAATTTATCGATCGACTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009987 GO:0016405 GO:0016874 GO:0016877 GO:0042180 GO:0042181 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

109

Amino Acids

11.98

Weight (kDa)

9.52

Isoelectric Point (pI)

39.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding_C	PF13193	22 - 96	5.4e-18	AMP-binding enzyme C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19010
fragaria_vesca	FvH4_5g23550
malus_domestica	MD14G1050700.v1.1
prunus_persica	Prupe.7G085200_v2.0.a1 Prupe.8G160600_v2.0.a1
pyrus_communis	pycom12g04570 pycom14g04200
rosa_chinensis	RchiOBHm_Chr3g0478721 RchiOBHm_Chr7g0212861
rosa_laevigata	RLG00000002864 RLG00000023630
rosa_multiflora	Rmu_sc0000394.1_g000050 Rmu_sc0001519.1_g000013
rosa_roxburghii	Rroxscaffold_3G00246500 Rroxscaffold_6G00403160
rosa_rugosa	Rorug03G0167300 Rorug03G0167400 Rorug07G0137100
rosa_samantha	Rh3AG219500 Rh3BG251200 Rh3CG248100 Rh3CG248200 Rh3DG244500 Rh7BG264300 Rh7CG287700 Rh7DG276800
rosa_wichuraiana	Rw3G019720 Rw7G023220 Rw7G023340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	142
AciI	CCGC	1 cut(s)	187
AcsI	RAATTY	1 cut(s)	310
AfaI	GTAC	1 cut(s)	11
AflIII	ACRYGT	1 cut(s)	217
AgsI	TTSAA	1 cut(s)	16
AluBI	AGCT	5 cut(s)	71, 194, 238, 281, 304
AluI	AGCT	5 cut(s)	71, 194, 238, 281, 304
ApeKI	GCWGC	2 cut(s)	116, 278
ApoI	RAATTY	1 cut(s)	310
AsuC2I	CCSGG	1 cut(s)	56
BanI	GGYRCC	1 cut(s)	142
BbvCI	CCTCAGC	1 cut(s)	239
BbvI	GCAGC	2 cut(s)	128, 290
BcnI	CCSGG	1 cut(s)	56
BfaI	CTAG	1 cut(s)	328
BfmI	CTRYAG	1 cut(s)	276
BisI	GCNGC	2 cut(s)	117, 279
BlsI	GCNGC	2 cut(s)	118, 280
BmcAI	AGTACT	1 cut(s)	11
Bme1390I	CCNGG	1 cut(s)	56
BmiI	GGNNCC	1 cut(s)	144
BmrFI	CCNGG	1 cut(s)	56
Bpu10I	CCTNAGC	2 cut(s)	239, 305
BpuMI	CCSGG	1 cut(s)	56
Bsa29I	ATCGAT	1 cut(s)	317
BsaJI	CCNNGG	2 cut(s)	54, 120
Bse1I	ACTGG	1 cut(s)	146
BseCI	ATCGAT	1 cut(s)	317
BseDI	CCNNGG	2 cut(s)	54, 120
BseGI	GGATG	2 cut(s)	85, 130
BseMII	CTCAG	3 cut(s)	81, 230, 307
BseNI	ACTGG	1 cut(s)	146
BseXI	GCAGC	2 cut(s)	128, 290
Bsh1285I	CGRYCG	1 cut(s)	321
BshNI	GGYRCC	1 cut(s)	142
BshVI	ATCGAT	1 cut(s)	317
BsiEI	CGRYCG	1 cut(s)	321
BsiSI	CCGG	1 cut(s)	56
Bsp143I	GATC	1 cut(s)	318
Bsp19I	CCATGG	1 cut(s)	120
BspACI	CCGC	1 cut(s)	187
BspCNI	CTCAG	3 cut(s)	82, 231, 306
BspDI	ATCGAT	1 cut(s)	317
BspLI	GGNNCC	1 cut(s)	144
BspMAI	CTGCAG	1 cut(s)	280
BspT107I	GGYRCC	1 cut(s)	142
BsrI	ACTGG	1 cut(s)	146
BssECI	CCNNGG	2 cut(s)	54, 120
BssMI	GATC	1 cut(s)	318
BssT1I	CCWWGG	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	20
BstDEI	CTNAG	4 cut(s)	90, 239, 293, 305
BstDSI	CCRYGG	1 cut(s)	120
BstF5I	GGATG	2 cut(s)	85, 130
BstKTI	GATC	1 cut(s)	321
BstMBI	GATC	1 cut(s)	318
BstMCI	CGRYCG	1 cut(s)	321
BstMWI	GCNNNNNNNGC	1 cut(s)	113
BstNSI	RCATGY	1 cut(s)	221
BstSCI	CCNGG	1 cut(s)	54
BstSFI	CTRYAG	1 cut(s)	276
BstV1I	GCAGC	2 cut(s)	128, 290
Bsu15I	ATCGAT	1 cut(s)	317
BsuTUI	ATCGAT	1 cut(s)	317
BtgI	CCRYGG	1 cut(s)	120
BtsCI	GGATG	2 cut(s)	85, 130
BtsIMutI	CAGTG	2 cut(s)	25, 153
ClaI	ATCGAT	1 cut(s)	317
Csp6I	GTAC	1 cut(s)	10
CviAII	CATG	4 cut(s)	34, 38, 121, 218
CviJI	RGCY	7 cut(s)	42, 71, 119, 194, 238, 281, 304
CviKI_1	RGCY	7 cut(s)	42, 71, 119, 194, 238, 281, 304
CviQI	GTAC	1 cut(s)	10
DdeI	CTNAG	4 cut(s)	90, 239, 293, 305
DpnI	GATC	1 cut(s)	320
DpnII	GATC	1 cut(s)	318
Eco130I	CCWWGG	1 cut(s)	120
Eco32I	GATATC	1 cut(s)	267
EcoRV	GATATC	1 cut(s)	267
EcoT14I	CCWWGG	1 cut(s)	120
EcoT22I	ATGCAT	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	4 cut(s)	37, 41, 124, 221
FaiI	YATR	4 cut(s)	35, 39, 122, 219
FatI	CATG	4 cut(s)	33, 37, 120, 217
FauI	CCCGC	1 cut(s)	194
Fnu4HI	GCNGC	2 cut(s)	117, 279
FokI	GGATG	2 cut(s)	72, 137
Fsp4HI	GCNGC	2 cut(s)	117, 279
FspBI	CTAG	1 cut(s)	328
GluI	GCNGC	2 cut(s)	117, 279
HapII	CCGG	1 cut(s)	56
Hin1II	CATG	4 cut(s)	37, 41, 124, 221
HinfI	GANTC	1 cut(s)	289
HpaII	CCGG	1 cut(s)	56
Hpy166II	GTNNAC	2 cut(s)	179, 255
Hpy188I	TCNGA	2 cut(s)	48, 296
Hpy188III	TCNNGA	1 cut(s)	89
Hpy8I	GTNNAC	2 cut(s)	179, 255
HpyAV	CCTTC	2 cut(s)	238, 291
HpyCH4III	ACNGT	1 cut(s)	20
HpyCH4IV	ACGT	1 cut(s)	207
HpyCH4V	TGCA	4 cut(s)	23, 37, 107, 278
HpyF10VI	GCNNNNNNNGC	1 cut(s)	113
HpyF3I	CTNAG	4 cut(s)	90, 239, 293, 305
HpySE526I	ACGT	1 cut(s)	207
Hsp92II	CATG	4 cut(s)	37, 41, 124, 221
Kzo9I	GATC	1 cut(s)	318
LmnI	GCTCC	2 cut(s)	229, 301
LpnPI	CCDG	5 cut(s)	69, 102, 159, 198, 267
Lsp1109I	GCAGC	2 cut(s)	128, 290
MaeI	CTAG	1 cut(s)	328
MaeII	ACGT	1 cut(s)	207
MaeIII	GTNAC	1 cut(s)	109
MalI	GATC	1 cut(s)	320
MboI	GATC	1 cut(s)	318
MboII	GAAGA	1 cut(s)	140
MluCI	AATT	1 cut(s)	310
MnlI	CCTC	2 cut(s)	133, 234
Mph1103I	ATGCAT	1 cut(s)	39
MseI	TTAA	1 cut(s)	81
MspA1I	CMGCKG	1 cut(s)	281
MspI	CCGG	1 cut(s)	56
MspR9I	CCNGG	1 cut(s)	56
MwoI	GCNNNNNNNGC	1 cut(s)	113
NciI	CCSGG	1 cut(s)	56
NcoI	CCATGG	1 cut(s)	120
NdeII	GATC	1 cut(s)	318
NlaIII	CATG	4 cut(s)	37, 41, 124, 221
NlaIV	GGNNCC	1 cut(s)	144
NsiI	ATGCAT	1 cut(s)	39
NspI	RCATGY	1 cut(s)	221
PciI	ACATGT	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	289
PkrI	GCNGC	2 cut(s)	118, 280
Ple19I	CGATCG	1 cut(s)	321
PscI	ACATGT	1 cut(s)	217
PspN4I	GGNNCC	1 cut(s)	144
PstI	CTGCAG	1 cut(s)	280
PvuI	CGATCG	1 cut(s)	321
PvuII	CAGCTG	1 cut(s)	281
RsaI	GTAC	1 cut(s)	11
RsaNI	GTAC	1 cut(s)	10
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	2 cut(s)	117, 279
Sau3AI	GATC	1 cut(s)	318
ScaI	AGTACT	1 cut(s)	11
ScrFI	CCNGG	1 cut(s)	56
SetI	ASST	8 cut(s)	73, 144, 196, 210, 240, 249, 283, 306
SfcI	CTRYAG	1 cut(s)	276
Sse9I	AATT	1 cut(s)	310
SsiI	CCGC	1 cut(s)	187
SspMI	CTAG	1 cut(s)	328
StyD4I	CCNGG	1 cut(s)	54
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	20
TaiI	ACGT	1 cut(s)	210
TaqI	TCGA	4 cut(s)	263, 269, 317, 321
TasI	AATT	1 cut(s)	310
TatI	WGTACW	1 cut(s)	9
TfiI	GAWTC	1 cut(s)	289
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	2 cut(s)	25, 153
TseI	GCWGC	2 cut(s)	116, 278
TspDTI	ATGAA	2 cut(s)	17, 141
TspRI	CASTG	2 cut(s)	25, 153
XapI	RAATTY	1 cut(s)	310
XceI	RCATGY	1 cut(s)	221
XspI	CTAG	1 cut(s)	328
ZrmI	AGTACT	1 cut(s)	11
Zsp2I	ATGCAT	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.