Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000394.1

Orthogroup ID

OG0005432

Physical Location & Seq

Genomic Coordinates Reverse (-)

175243 .. 178671

Gene Structure 3429 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000394.1_g000050.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1701 bp

atggctaaaacctcaaacaacagcttaaaccctgaaaagcatgaatctttggctacccaacaacaacaacaacatcatccatggtggttttcaccagatacaggaatctaccacagcaaacaccccaatgttaatctccccacaaacccttttcttgatgttgtctcattcattttctcacacaagcacactggggtttcagctttgattgattcctcatctgggttttcaatatcttactcaaagctctattctttgaccaagtccatggcctctggcctcaacaaaatgggtgtttcacaaggtgatgttgttctgcttcttttgcctaattctgtttactatcccattgttttcttgggtgttttgtatattggtgctgttgttacaaccatgaaccctctaagcactgtggtagagatcaagaaacagattaaggattgcaatgcatgttttgcttttacgggatatgaaaatgttgataaattgcaaggattgggtattcctgcaattgcagttccgggaaatgtagtgttggattcaaataaagaactgttttcagttttttatgagcttgttaatagtgaatttgatctggcttcaaggccagtgatcatgcagcaagatactgcggcgatattgtattcgtcagggactactggtgtgagtaagggtgttttgctaacacatgggaatctcatagctacagttgagctttttgtgcggtttgaggcttcacaatatgagtattcgagcttgaagaatgtgtatttatctgttctgccattgtttcacatatacgggttggcacttatagtggttggattattgtctttggggtcgagcattgttataatgaagaaatttgatattaatgaggtggtcaaggcaattgataggtataaagtaacgcacttcccagttgttccaccaatattgacagcattaacaaaaatagtagaggatgttggggcacacagtctccagagtttaaagcaggtttcttgtggagcagctcctttgagcatgaaactcatagaagacttcgttcaggcccttcctcatgttgattttattcagggatatggcatgactgagacgactgcagtaggaactcgcggtttcaatactgaaaagattaggaaatattcttcaattggacttttagctccaaacatgcaagctaaagtggtagattggaataccggatcatttttgcctccagctagtattggtgaactgtggttacgaggaccttcaattatgaaaggttacttgaataatgcaagggcaactatgtcaacaattgataataatggttggctgcatactggggacatcagttattttgatgaggacggatacttacatgtatgtgatcgcataaaggagattatcaaatacaagggatttcagattgctcctgctgatttagaagctgtgttgatttcgcatcctgagatactagatgttggagttacaggtgccaccgatgaggaatgtggagaggtaccagtggcatttgtggtcaggaagcatgacagtgaactttctcaggaagatatcatggattacgttgcccgacaggtttctccacacaagaaggtccgaaaggtagtgtttacacattcaattccaagatctgcagcagggaagatcctccgaagggagctcaggaatttcttggcttctagattgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009987 GO:0016405 GO:0016874 GO:0016877 GO:0042180 GO:0042181 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

566

Amino Acids

62.3

Weight (kDa)

6.66

Isoelectric Point (pI)

34.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19010
fragaria_vesca	FvH4_5g23550
malus_domestica	MD14G1050700.v1.1
prunus_persica	Prupe.7G085200_v2.0.a1 Prupe.8G160600_v2.0.a1
pyrus_communis	pycom12g04570 pycom14g04200
rosa_chinensis	RchiOBHm_Chr3g0478721 RchiOBHm_Chr7g0212861
rosa_laevigata	RLG00000002864 RLG00000023630
rosa_multiflora	Rmu_sc0000394.1_g000050 Rmu_sc0001519.1_g000013
rosa_roxburghii	Rroxscaffold_3G00246500 Rroxscaffold_6G00403160
rosa_rugosa	Rorug03G0167300 Rorug03G0167400 Rorug07G0137100
rosa_samantha	Rh3AG219500 Rh3BG251200 Rh3CG248100 Rh3CG248200 Rh3DG244500 Rh7BG264300 Rh7CG287700 Rh7DG276800
rosa_wichuraiana	Rw3G019720 Rw7G023220 Rw7G023340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	854
Acc36I	ACCTGC	1 cut(s)	988
Acc65I	GGTACC	1 cut(s)	1510
AccB1I	GGYRCC	2 cut(s)	1484, 1510
AccII	CGCG	1 cut(s)	1119
AciI	CCGC	3 cut(s)	632, 724, 1119
AclWI	GGATC	2 cut(s)	1216, 1651
AcsI	RAATTY	3 cut(s)	587, 863, 1678
AdeI	CACNNNGTG	1 cut(s)	305
AfaI	GTAC	1 cut(s)	1512
AfiI	CCNNNNNNNGG	3 cut(s)	101, 222, 1666
AflIII	ACRYGT	1 cut(s)	1369
AgsI	TTSAA	9 cut(s)	231, 543, 603, 760, 1126, 1155, 1260, 1279, 1632
Alw21I	GWGCWC	1 cut(s)	1674
Alw26I	GTCTC	3 cut(s)	169, 986, 1091
AlwI	GGATC	2 cut(s)	1216, 1651
AoxI	GGCC	4 cut(s)	270, 277, 605, 1053
ApeKI	GCWGC	4 cut(s)	619, 1013, 1324, 1646
ApoI	RAATTY	3 cut(s)	587, 863, 1678
AseI	ATTAAT	1 cut(s)	873
Asp718I	GGTACC	1 cut(s)	1510
AspS9I	GGNCC	3 cut(s)	1054, 1253, 1606
AsuC2I	CCSGG	1 cut(s)	522
AsuHPI	GGTGA	3 cut(s)	84, 317, 1247
AvaII	GGWCC	2 cut(s)	1253, 1606
BaeGI	GKGCMC	1 cut(s)	976
BanI	GGYRCC	2 cut(s)	1484, 1510
BanII	GRGCYC	1 cut(s)	1674
BbsI	GAAGAC	1 cut(s)	1047
Bbv12I	GWGCWC	1 cut(s)	1674
BbvI	GCAGC	4 cut(s)	631, 1025, 1311, 1658
BciVI	GTATCC	1 cut(s)	1355
BclI	TGATCA	1 cut(s)	612
BcnI	CCSGG	1 cut(s)	522
BcoDI	GTCTC	3 cut(s)	169, 986, 1091
BfaI	CTAG	3 cut(s)	1227, 1466, 1692
BfmI	CTRYAG	3 cut(s)	705, 1104, 1644
BfuAI	ACCTGC	1 cut(s)	988
BfuI	GTATCC	1 cut(s)	1355
BglII	AGATCT	1 cut(s)	1640
BisI	GCNGC	5 cut(s)	620, 633, 1014, 1325, 1647
BlsI	GCNGC	5 cut(s)	621, 634, 1015, 1326, 1648
Bme1390I	CCNGG	1 cut(s)	522
Bme18I	GGWCC	2 cut(s)	1253, 1606
BmgT120I	GGNCC	3 cut(s)	1054, 1253, 1606
BmiI	GGNNCC	2 cut(s)	1486, 1512
BmrFI	CCNGG	1 cut(s)	522
BmrI	ACTGGG	3 cut(s)	201, 914, 1341
BmsI	GCATC	1 cut(s)	1462
BmuI	ACTGGG	3 cut(s)	201, 914, 1341
BpiI	GAAGAC	1 cut(s)	1047
BpmI	CTGGAG	2 cut(s)	968, 1206
Bpu10I	CCTNAGC	1 cut(s)	1673
BpuMI	CCSGG	1 cut(s)	522
BsaJI	CCNNGG	2 cut(s)	80, 267
BsaWI	WCCGGW	1 cut(s)	1205
BsaXI	ACNNNNNCTCC	2 cut(s)	966, 996
Bsc4I	CCNNNNNNNGG	3 cut(s)	101, 222, 1666
Bse1I	ACTGG	6 cut(s)	196, 608, 664, 920, 1336, 1514
Bse3DI	GCAATG	1 cut(s)	451
BseDI	CCNNGG	2 cut(s)	80, 267
BseGI	GGATG	3 cut(s)	76, 970, 1453
BseLI	CCNNNNNNNGG	3 cut(s)	101, 222, 1666
BseMI	GCAATG	1 cut(s)	451
BseMII	CTCAG	4 cut(s)	1086, 1449, 1568, 1687
BseNI	ACTGG	6 cut(s)	196, 608, 664, 920, 1336, 1514
BseSI	GKGCMC	1 cut(s)	976
BseXI	GCAGC	4 cut(s)	631, 1025, 1311, 1658
Bsh1236I	CGCG	1 cut(s)	1119
BshFI	GGCC	4 cut(s)	272, 279, 607, 1055
BshNI	GGYRCC	2 cut(s)	1484, 1510
BsiHKAI	GWGCWC	1 cut(s)	1674
BsiSI	CCGG	2 cut(s)	521, 1206
BslFI	GGGAC	2 cut(s)	667, 1349
BslI	CCNNNNNNNGG	3 cut(s)	101, 222, 1666
BsmAI	GTCTC	3 cut(s)	169, 986, 1091
BsmBI	CGTCTC	1 cut(s)	1091
BsmFI	GGGAC	2 cut(s)	667, 1349
BsnI	GGCC	4 cut(s)	272, 279, 607, 1055
Bsp1286I	GDGCHC	2 cut(s)	976, 1674
Bsp143I	GATC	7 cut(s)	420, 592, 612, 1208, 1378, 1640, 1656
Bsp19I	CCATGG	2 cut(s)	80, 267
BspACI	CCGC	3 cut(s)	632, 724, 1119
BspANI	GGCC	4 cut(s)	272, 279, 607, 1055
BspCNI	CTCAG	4 cut(s)	1087, 1450, 1567, 1686
BspFNI	CGCG	1 cut(s)	1119
BspLI	GGNNCC	2 cut(s)	1486, 1512
BspMAI	CTGCAG	2 cut(s)	1108, 1648
BspMI	ACCTGC	1 cut(s)	988
BspPI	GGATC	2 cut(s)	1216, 1651
BspT107I	GGYRCC	2 cut(s)	1484, 1510
BsrDI	GCAATG	1 cut(s)	451
BsrI	ACTGG	6 cut(s)	196, 608, 664, 920, 1336, 1514
BssECI	CCNNGG	2 cut(s)	80, 267
BssMI	GATC	7 cut(s)	420, 592, 612, 1208, 1378, 1640, 1656
BssT1I	CCWWGG	2 cut(s)	80, 267
Bst4CI	ACNGT	6 cut(s)	412, 555, 709, 980, 1242, 1544
BstAPI	GCANNNNNTGC	1 cut(s)	455
BstC8I	GCNNGC	1 cut(s)	1182
BstDEI	CTNAG	5 cut(s)	404, 1095, 1458, 1554, 1673
BstDSI	CCRYGG	2 cut(s)	80, 267
BstF5I	GGATG	3 cut(s)	76, 970, 1453
BstFNI	CGCG	1 cut(s)	1119
BstKTI	GATC	7 cut(s)	423, 595, 615, 1211, 1381, 1643, 1659
BstMAI	GTCTC	3 cut(s)	169, 986, 1091
BstMBI	GATC	7 cut(s)	420, 592, 612, 1208, 1378, 1640, 1656
BstMWI	GCNNNNNNNGC	3 cut(s)	325, 455, 721
BstNSI	RCATGY	3 cut(s)	453, 1180, 1373
BstSCI	CCNGG	1 cut(s)	520
BstSFI	CTRYAG	3 cut(s)	705, 1104, 1644
BstSLI	GKGCMC	1 cut(s)	976
BstUI	CGCG	1 cut(s)	1119
BstV1I	GCAGC	4 cut(s)	631, 1025, 1311, 1658
BstV2I	GAAGAC	1 cut(s)	1047
BstX2I	RGATCY	2 cut(s)	1640, 1656
BstXI	CCANNNNNNTGG	1 cut(s)	268
BstYI	RGATCY	2 cut(s)	1640, 1656
BsuI	GTATCC	1 cut(s)	1355
BsuRI	GGCC	4 cut(s)	272, 279, 607, 1055
BtgI	CCRYGG	2 cut(s)	80, 267
BtsCI	GGATG	3 cut(s)	76, 970, 1453
BtsIMutI	CAGTG	5 cut(s)	189, 408, 615, 1521, 1549
BveI	ACCTGC	1 cut(s)	988
Cac8I	GCNNGC	1 cut(s)	1182
Cfr13I	GGNCC	3 cut(s)	1054, 1253, 1606
Csp6I	GTAC	1 cut(s)	1511
CspCI	CAANNNNNGTGG	2 cut(s)	918, 953
CviQI	GTAC	1 cut(s)	1511
DdeI	CTNAG	5 cut(s)	404, 1095, 1458, 1554, 1673
DpnI	GATC	7 cut(s)	422, 594, 614, 1210, 1380, 1642, 1658
DpnII	GATC	7 cut(s)	420, 592, 612, 1208, 1378, 1640, 1656
DraI	TTTAAA	1 cut(s)	993
DraIII	CACNNNGTG	1 cut(s)	305
Ecl136II	GAGCTC	1 cut(s)	1672
Eco130I	CCWWGG	2 cut(s)	80, 267
Eco24I	GRGCYC	1 cut(s)	1674
Eco32I	GATATC	1 cut(s)	1564
Eco47I	GGWCC	2 cut(s)	1253, 1606
Eco53kI	GAGCTC	1 cut(s)	1672
EcoICRI	GAGCTC	1 cut(s)	1672
EcoO109I	RGGNCCY	2 cut(s)	1054, 1253
EcoRV	GATATC	1 cut(s)	1564
EcoT14I	CCWWGG	2 cut(s)	80, 267
EcoT22I	ATGCAT	1 cut(s)	451
EcoT38I	GRGCYC	1 cut(s)	1674
ErhI	CCWWGG	2 cut(s)	80, 267
Esp3I	CGTCTC	1 cut(s)	1091
FaqI	GGGAC	2 cut(s)	667, 1349
FbaI	TGATCA	1 cut(s)	612
Fnu4HI	GCNGC	5 cut(s)	620, 633, 1014, 1325, 1647
FokI	GGATG	3 cut(s)	63, 977, 1440
FriOI	GRGCYC	1 cut(s)	1674
Fsp4HI	GCNGC	5 cut(s)	620, 633, 1014, 1325, 1647
FspBI	CTAG	3 cut(s)	1227, 1466, 1692
GluI	GCNGC	5 cut(s)	620, 633, 1014, 1325, 1647
GsuI	CTGGAG	2 cut(s)	968, 1206
HaeIII	GGCC	4 cut(s)	272, 279, 607, 1055
HapII	CCGG	2 cut(s)	521, 1206
HincII	GTYRAC	1 cut(s)	1302
HindII	GTYRAC	1 cut(s)	1302
HinfI	GANTC	5 cut(s)	44, 105, 212, 539, 694
HpaII	CCGG	2 cut(s)	521, 1206
HphI	GGTGA	3 cut(s)	84, 317, 1247
Hpy166II	GTNNAC	5 cut(s)	340, 1238, 1302, 1547, 1623
Hpy188I	TCNGA	3 cut(s)	1416, 1610, 1664
Hpy188III	TCNNGA	8 cut(s)	155, 424, 985, 1457, 1531, 1556, 1675, 1692
Hpy8I	GTNNAC	5 cut(s)	340, 1238, 1302, 1547, 1623
HpyAV	CCTTC	4 cut(s)	1067, 1266, 1597, 1659
HpyCH4III	ACNGT	6 cut(s)	412, 555, 709, 980, 1242, 1544
HpyCH4IV	ACGT	1 cut(s)	1575
HpyF10VI	GCNNNNNNNGC	3 cut(s)	325, 455, 721
HpyF3I	CTNAG	5 cut(s)	404, 1095, 1458, 1554, 1673
HpySE526I	ACGT	1 cut(s)	1575
KpnI	GGTACC	1 cut(s)	1514
Ksp22I	TGATCA	1 cut(s)	612
Kzo9I	GATC	7 cut(s)	420, 592, 612, 1208, 1378, 1640, 1656
LmnI	GCTCC	5 cut(s)	1010, 1021, 1174, 1426, 1669
Lsp1109I	GCAGC	4 cut(s)	631, 1025, 1311, 1658
LweI	GCATC	1 cut(s)	1462
MaeI	CTAG	3 cut(s)	1227, 1466, 1692
MaeII	ACGT	1 cut(s)	1575
MaeIII	GTNAC	5 cut(s)	385, 907, 1245, 1271, 1477
MalI	GATC	7 cut(s)	422, 594, 614, 1210, 1380, 1642, 1658
MboI	GATC	7 cut(s)	420, 592, 612, 1208, 1378, 1640, 1656
MboII	GAAGA	6 cut(s)	772, 871, 1052, 1143, 1571, 1666
MfeI	CAATTG	4 cut(s)	510, 891, 1155, 1305
MflI	RGATCY	2 cut(s)	1640, 1656
MhlI	GDGCHC	2 cut(s)	976, 1674
MmeI	TCCRAC	3 cut(s)	516, 802, 1453
Mph1103I	ATGCAT	1 cut(s)	451
MseI	TTAA	7 cut(s)	26, 132, 435, 579, 873, 947, 992
MslI	CAYNNNNRTG	3 cut(s)	126, 1374, 1542
MspI	CCGG	2 cut(s)	521, 1206
MspR9I	CCNGG	1 cut(s)	522
MunI	CAATTG	4 cut(s)	510, 891, 1155, 1305
MvnI	CGCG	1 cut(s)	1119
MwoI	GCNNNNNNNGC	3 cut(s)	325, 455, 721
NciI	CCSGG	1 cut(s)	522
NcoI	CCATGG	2 cut(s)	80, 267
NdeII	GATC	7 cut(s)	420, 592, 612, 1208, 1378, 1640, 1656
NlaIV	GGNNCC	2 cut(s)	1486, 1512
NsiI	ATGCAT	1 cut(s)	451
NspI	RCATGY	3 cut(s)	453, 1180, 1373
PciI	ACATGT	1 cut(s)	1369
PfeI	GAWTC	5 cut(s)	44, 105, 212, 539, 694
PflFI	GACNNNGTC	1 cut(s)	262
PfoI	TCCNGGA	1 cut(s)	520
PkrI	GCNGC	5 cut(s)	621, 634, 1015, 1326, 1648
PpuMI	RGGWCCY	1 cut(s)	1253
PscI	ACATGT	1 cut(s)	1369
PshBI	ATTAAT	1 cut(s)	873
PsiI	TTATAA	1 cut(s)	854
Psp124BI	GAGCTC	1 cut(s)	1674
Psp5II	RGGWCCY	1 cut(s)	1253
PspN4I	GGNNCC	2 cut(s)	1486, 1512
PspPI	GGNCC	3 cut(s)	1054, 1253, 1606
PspPPI	RGGWCCY	1 cut(s)	1253
PsrI	GAACNNNNNNTAC	2 cut(s)	1230, 1262
PstI	CTGCAG	2 cut(s)	1108, 1648
PsuI	RGATCY	2 cut(s)	1640, 1656
PsyI	GACNNNGTC	1 cut(s)	262
RsaI	GTAC	1 cut(s)	1512
RsaNI	GTAC	1 cut(s)	1511
RseI	CAYNNNNRTG	3 cut(s)	126, 1374, 1542
SacI	GAGCTC	1 cut(s)	1674
SaqAI	TTAA	7 cut(s)	26, 132, 435, 579, 873, 947, 992
SatI	GCNGC	5 cut(s)	620, 633, 1014, 1325, 1647
Sau3AI	GATC	7 cut(s)	420, 592, 612, 1208, 1378, 1640, 1656
Sau96I	GGNCC	3 cut(s)	1054, 1253, 1606
ScrFI	CCNGG	1 cut(s)	522
SduI	GDGCHC	2 cut(s)	976, 1674
SfaNI	GCATC	1 cut(s)	1462
SfcI	CTRYAG	3 cut(s)	705, 1104, 1644
SinI	GGWCC	2 cut(s)	1253, 1606
SmiMI	CAYNNNNRTG	3 cut(s)	126, 1374, 1542
SsiI	CCGC	3 cut(s)	632, 724, 1119
SspI	AATATT	2 cut(s)	936, 1148
SspMI	CTAG	3 cut(s)	1227, 1466, 1692
SstI	GAGCTC	1 cut(s)	1674
StyD4I	CCNGG	1 cut(s)	520
StyI	CCWWGG	2 cut(s)	80, 267
TaaI	ACNGT	6 cut(s)	412, 555, 709, 980, 1242, 1544
TaiI	ACGT	1 cut(s)	1578
TaqI	TCGA	2 cut(s)	752, 842
TauI	GCSGC	1 cut(s)	635
TfiI	GAWTC	5 cut(s)	44, 105, 212, 539, 694
Tru1I	TTAA	7 cut(s)	26, 132, 435, 579, 873, 947, 992
Tru9I	TTAA	7 cut(s)	26, 132, 435, 579, 873, 947, 992
TscAI	CASTG	5 cut(s)	196, 415, 615, 1521, 1549
TseI	GCWGC	4 cut(s)	619, 1013, 1324, 1646
TspDTI	ATGAA	7 cut(s)	57, 160, 410, 486, 872, 1043, 1280
TspGWI	ACGGA	1 cut(s)	1374
TspRI	CASTG	5 cut(s)	196, 415, 615, 1521, 1549
Tth111I	GACNNNGTC	1 cut(s)	262
VpaK11BI	GGWCC	2 cut(s)	1253, 1606
VspI	ATTAAT	1 cut(s)	873
XapI	RAATTY	3 cut(s)	587, 863, 1678
XbaI	TCTAGA	1 cut(s)	1691
XceI	RCATGY	3 cut(s)	453, 1180, 1373
XcmI	CCANNNNNNNNNTGG	1 cut(s)	355
XspI	CTAG	3 cut(s)	1227, 1466, 1692
Zsp2I	ATGCAT	1 cut(s)	451

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.