Rh7DG276800

4-coumarate--CoA ligase-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
Physical Location & Seq
Reverse (-)
29828524 .. 29832360
3837 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG276800.1

Sequence Viewer

Length: 1704 bp
ATGGCTAAAACCTCAAGCAACAGCTTAAACCCTGAAAAGCATGAATCTTTGGCTACCCAACAACAACAACAACAACAACATCCAAGGTGGTTTTCACCAGATACAGGAATCTACCACAGCAAACACCCTAATGTGAATCTCCCCACAGATCCTTTTCTTGATGTTGTCTCATTCATTTTCTCACACAAGCACACTGGGGTTTCAGCTTTGATTGATTCCTCATCTGGGTTTTCAATATCTTACTCAAAGCTCTATTCTTTGACCAAGTCCATGGCCTCTGGCCTCAACAAAATGGGTGTTTCACAAGGTGATGTTGTTCTGCTTCTTTTGCCTAATTCTGTTTACTATCCCATTGTTTTCTTGGGTGTTTTGTATATTGGTGCTGTTGTTACAACCATGAACCCTCTAAGCAGTGTGGTAGAGATCAAGAAACAGATTAAGGATTGCAATGCATGTTTTGCTTTTACGGGATATGAAAATGTTGATAAATTGCAAGCATTGGGTATTCCTGCAATTGCAGTTCCAGGAAATGTAGTGTTGGATTCAAATAAAGAACTGTTTTCAGTTTTTTATGAGCTTGTTAATAGTGAATTTGATCTGGCTTCAAGGCCAGTGATCATGCAGCAAGATACTGCGGCGATATTGTATTCGTCAGGGACTACTGGTGTGAGTAAAGGTGTTTTGCTAACACATGGGAATCTCATAGCTACAGTTGAGCTTTTTGTGCGGTTTGAGGCTTCACAATATGAGTATTCGAGCTTGAAGAATGTGTATTTATCTGTTCTGCCATTGTTTCACATATACGGGTTGGCACTTATAGTGGTTGGATTATTGTCTTTGGGGTCGAGCATTGTTATAATGAAGAAATTTGATATTAATGAGGTGGTCAAGGCAATTGATAGGTATAAAGTAACGCACTTCCCAGTTGTTCCACCAATATTGACAGCATTAACAAAAATAGTAGAGGATGTTGGGGCACACAGTCTCCAGAGTTTAAAGCAGGTTTCTTGTGGAGCAGCTCCTTTGAGCATGAAACTCATAGAAGACTTCGTTCAGGCCCTTCCTCATGTTGATTTTATTCAGGGATATGGCATGACTGAGACGACTGCAGTAGGAACTCGCGGTTTCAATACTGAAAAGATTAGGAAATATTCTTCAATTGGACTTTTAGCTCCAAACATGCAAGCTAAAGTGGTAGATTGGAATACCGGATCCTTTTTGCCTCCAGCTAGTATTGGTGAACTGTGGTTACGAGGACCTTCAATTATGAGAGGTTACTTGAATAATGCAAGGGCAACTATGTCAACAATTGATAATGATGGTTGGCTGCATACTGGGGACATCAGTTATTTTGATGAGGACGGATACTTACATGTATGTGATCGCATAAAGGAGATTATCAAATACAAGGGATTTCAGATTGCTCCTGCTGATTTAGAAGCTGTGTTGATTTCGCATCCTGAGATACTAGATGTTGGAGTTACAGGTGCCACTGATGAGGAATGTGGAGAGATACCAGTGGCATTTGTGGTCAGGAAGCATGACAGTGAAGTTTCTCAGGAAGATATCATGGATTACGTTGCCCAACAGGTTTCTCCACACAAGAAGGTCCGAAAGGTAGTGTTTACACATTCAATTCCAAGATCTGCAGCAGGGAAGATCCTCCGAAGGGAGCTCAGGAATTTCTTGCCTTCTAGATTGTAG

Protein Analysis

567

Amino Acids

62.39

Weight (kDa)

6.39

Isoelectric Point (pI)

38.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMP-binding PF00501 64 - 427 1.6e-86 AMP-binding enzyme
AMP-binding_C PF13193 479 - 553 8.7e-17 AMP-binding enzyme C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 857
Acc36I ACCTGC 1 cut(s) 991
AccB1I GGYRCC 1 cut(s) 1487
AccII CGCG 1 cut(s) 1122
AciI CCGC 3 cut(s) 635, 727, 1122
AclWI GGATC 4 cut(s) 143, 1206, 1219, 1654
AcsI RAATTY 3 cut(s) 590, 866, 1681
AdeI CACNNNGTG 1 cut(s) 308
AfiI CCNNNNNNNGG 3 cut(s) 104, 225, 1669
AflIII ACRYGT 1 cut(s) 1372
AgsI TTSAA 9 cut(s) 234, 546, 606, 763, 1129, 1158, 1263, 1282, 1635
AjnI CCWGG 1 cut(s) 523
AjuI GAANNNNNNNTTGG 2 cut(s) 76, 108
Alw21I GWGCWC 1 cut(s) 1677
Alw26I GTCTC 3 cut(s) 172, 989, 1094
AlwI GGATC 4 cut(s) 143, 1206, 1219, 1654
AoxI GGCC 4 cut(s) 273, 280, 608, 1056
ApeKI GCWGC 4 cut(s) 622, 1016, 1327, 1649
ApoI RAATTY 3 cut(s) 590, 866, 1681
AseI ATTAAT 1 cut(s) 876
AspS9I GGNCC 3 cut(s) 1057, 1256, 1609
AsuHPI GGTGA 3 cut(s) 87, 320, 1250
AvaII GGWCC 2 cut(s) 1256, 1609
BaeGI GKGCMC 1 cut(s) 979
BamHI GGATCC 1 cut(s) 1211
BanI GGYRCC 1 cut(s) 1487
BanII GRGCYC 1 cut(s) 1677
BbsI GAAGAC 1 cut(s) 1050
Bbv12I GWGCWC 1 cut(s) 1677
BbvI GCAGC 4 cut(s) 634, 1028, 1314, 1661
BccI CCATC 1 cut(s) 1313
BciT130I CCWGG 1 cut(s) 525
BciVI GTATCC 1 cut(s) 1358
BclI TGATCA 1 cut(s) 615
BcoDI GTCTC 3 cut(s) 172, 989, 1094
BfaI CTAG 3 cut(s) 1230, 1469, 1695
BfmI CTRYAG 3 cut(s) 708, 1107, 1647
BfuAI ACCTGC 1 cut(s) 991
BfuI GTATCC 1 cut(s) 1358
BglII AGATCT 1 cut(s) 1643
BisI GCNGC 5 cut(s) 623, 636, 1017, 1328, 1650
BlsI GCNGC 5 cut(s) 624, 637, 1018, 1329, 1651
Bme1390I CCNGG 1 cut(s) 525
Bme18I GGWCC 2 cut(s) 1256, 1609
BmgT120I GGNCC 3 cut(s) 1057, 1256, 1609
BmiI GGNNCC 2 cut(s) 1213, 1489
BmrFI CCNGG 1 cut(s) 525
BmrI ACTGGG 3 cut(s) 204, 917, 1344
BmsI GCATC 1 cut(s) 1465
BmuI ACTGGG 3 cut(s) 204, 917, 1344
BpiI GAAGAC 1 cut(s) 1050
BpmI CTGGAG 2 cut(s) 971, 1209
Bpu10I CCTNAGC 1 cut(s) 1676
BsaJI CCNNGG 2 cut(s) 83, 270
BsaWI WCCGGW 1 cut(s) 1208
BsaXI ACNNNNNCTCC 2 cut(s) 969, 999
Bsc4I CCNNNNNNNGG 3 cut(s) 104, 225, 1669
Bse1I ACTGG 6 cut(s) 199, 611, 667, 923, 1339, 1517
Bse3DI GCAATG 1 cut(s) 454
BseBI CCWGG 1 cut(s) 525
BseDI CCNNGG 2 cut(s) 83, 270
BseGI GGATG 3 cut(s) 79, 973, 1456
BseLI CCNNNNNNNGG 3 cut(s) 104, 225, 1669
BseMI GCAATG 1 cut(s) 454
BseMII CTCAG 4 cut(s) 1089, 1452, 1571, 1690
BseNI ACTGG 6 cut(s) 199, 611, 667, 923, 1339, 1517
BseSI GKGCMC 1 cut(s) 979
BseXI GCAGC 4 cut(s) 634, 1028, 1314, 1661
Bsh1236I CGCG 1 cut(s) 1122
BshFI GGCC 4 cut(s) 275, 282, 610, 1058
BshNI GGYRCC 1 cut(s) 1487
BsiHKAI GWGCWC 1 cut(s) 1677
BsiSI CCGG 1 cut(s) 1209
BslFI GGGAC 2 cut(s) 670, 1352
BslI CCNNNNNNNGG 3 cut(s) 104, 225, 1669
BsmAI GTCTC 3 cut(s) 172, 989, 1094
BsmBI CGTCTC 1 cut(s) 1094
BsmFI GGGAC 2 cut(s) 670, 1352
BsnI GGCC 4 cut(s) 275, 282, 610, 1058
Bsp1286I GDGCHC 2 cut(s) 979, 1677
Bsp143I GATC 8 cut(s) 148, 423, 595, 615, 1211, 1381, 1643, 1659
Bsp19I CCATGG 1 cut(s) 270
BspACI CCGC 3 cut(s) 635, 727, 1122
BspANI GGCC 4 cut(s) 275, 282, 610, 1058
BspCNI CTCAG 4 cut(s) 1090, 1453, 1570, 1689
BspFNI CGCG 1 cut(s) 1122
BspLI GGNNCC 2 cut(s) 1213, 1489
BspMAI CTGCAG 2 cut(s) 1111, 1651
BspMI ACCTGC 1 cut(s) 991
BspPI GGATC 4 cut(s) 143, 1206, 1219, 1654
BspT107I GGYRCC 1 cut(s) 1487
BsrDI GCAATG 1 cut(s) 454
BsrI ACTGG 6 cut(s) 199, 611, 667, 923, 1339, 1517
BssECI CCNNGG 2 cut(s) 83, 270
BssMI GATC 8 cut(s) 148, 423, 595, 615, 1211, 1381, 1643, 1659
BssT1I CCWWGG 2 cut(s) 83, 270
Bst2UI CCWGG 1 cut(s) 525
Bst4CI ACNGT 5 cut(s) 558, 712, 983, 1245, 1547
BstAPI GCANNNNNTGC 1 cut(s) 458
BstC8I GCNNGC 2 cut(s) 495, 1185
BstDEI CTNAG 5 cut(s) 407, 1098, 1461, 1557, 1676
BstDSI CCRYGG 1 cut(s) 270
BstF5I GGATG 3 cut(s) 79, 973, 1456
BstFNI CGCG 1 cut(s) 1122
BstKTI GATC 8 cut(s) 151, 426, 598, 618, 1214, 1384, 1646, 1662
BstMAI GTCTC 3 cut(s) 172, 989, 1094
BstMBI GATC 8 cut(s) 148, 423, 595, 615, 1211, 1381, 1643, 1659
BstMWI GCNNNNNNNGC 3 cut(s) 328, 458, 724
BstNI CCWGG 1 cut(s) 525
BstNSI RCATGY 3 cut(s) 456, 1183, 1376
BstSCI CCNGG 1 cut(s) 523
BstSFI CTRYAG 3 cut(s) 708, 1107, 1647
BstSLI GKGCMC 1 cut(s) 979
BstUI CGCG 1 cut(s) 1122
BstV1I GCAGC 4 cut(s) 634, 1028, 1314, 1661
BstV2I GAAGAC 1 cut(s) 1050
BstX2I RGATCY 4 cut(s) 148, 1211, 1643, 1659
BstXI CCANNNNNNTGG 1 cut(s) 271
BstYI RGATCY 4 cut(s) 148, 1211, 1643, 1659
BsuI GTATCC 1 cut(s) 1358
BsuRI GGCC 4 cut(s) 275, 282, 610, 1058
BtgI CCRYGG 1 cut(s) 270
BtsCI GGATG 3 cut(s) 79, 973, 1456
BtsI GCAGTG 1 cut(s) 418
BtsIMutI CAGTG 6 cut(s) 192, 418, 618, 1491, 1524, 1552
BveI ACCTGC 1 cut(s) 991
Cac8I GCNNGC 2 cut(s) 495, 1185
Cfr13I GGNCC 3 cut(s) 1057, 1256, 1609
CspCI CAANNNNNGTGG 2 cut(s) 921, 956
DdeI CTNAG 5 cut(s) 407, 1098, 1461, 1557, 1676
DpnI GATC 8 cut(s) 150, 425, 597, 617, 1213, 1383, 1645, 1661
DpnII GATC 8 cut(s) 148, 423, 595, 615, 1211, 1381, 1643, 1659
DraI TTTAAA 1 cut(s) 996
DraIII CACNNNGTG 1 cut(s) 308
Ecl136II GAGCTC 1 cut(s) 1675
Eco130I CCWWGG 2 cut(s) 83, 270
Eco24I GRGCYC 1 cut(s) 1677
Eco32I GATATC 1 cut(s) 1567
Eco47I GGWCC 2 cut(s) 1256, 1609
Eco53kI GAGCTC 1 cut(s) 1675
EcoICRI GAGCTC 1 cut(s) 1675
EcoO109I RGGNCCY 2 cut(s) 1057, 1256
EcoRII CCWGG 1 cut(s) 523
EcoRV GATATC 1 cut(s) 1567
EcoT14I CCWWGG 2 cut(s) 83, 270
EcoT22I ATGCAT 1 cut(s) 454
EcoT38I GRGCYC 1 cut(s) 1677
ErhI CCWWGG 2 cut(s) 83, 270
Esp3I CGTCTC 1 cut(s) 1094
FaqI GGGAC 2 cut(s) 670, 1352
FbaI TGATCA 1 cut(s) 615
Fnu4HI GCNGC 5 cut(s) 623, 636, 1017, 1328, 1650
FokI GGATG 3 cut(s) 66, 980, 1443
FriOI GRGCYC 1 cut(s) 1677
Fsp4HI GCNGC 5 cut(s) 623, 636, 1017, 1328, 1650
FspBI CTAG 3 cut(s) 1230, 1469, 1695
GluI GCNGC 5 cut(s) 623, 636, 1017, 1328, 1650
GsuI CTGGAG 2 cut(s) 971, 1209
HaeIII GGCC 4 cut(s) 275, 282, 610, 1058
HapII CCGG 1 cut(s) 1209
HincII GTYRAC 1 cut(s) 1305
HindII GTYRAC 1 cut(s) 1305
HinfI GANTC 6 cut(s) 44, 108, 136, 215, 542, 697
HpaII CCGG 1 cut(s) 1209
HphI GGTGA 3 cut(s) 87, 320, 1250
Hpy166II GTNNAC 4 cut(s) 343, 1241, 1305, 1626
Hpy188I TCNGA 3 cut(s) 1419, 1613, 1667
Hpy188III TCNNGA 8 cut(s) 158, 427, 988, 1460, 1534, 1559, 1678, 1695
Hpy8I GTNNAC 4 cut(s) 343, 1241, 1305, 1626
HpyAV CCTTC 5 cut(s) 1070, 1269, 1600, 1662, 1701
HpyCH4III ACNGT 5 cut(s) 558, 712, 983, 1245, 1547
HpyCH4IV ACGT 1 cut(s) 1578
HpyF10VI GCNNNNNNNGC 3 cut(s) 328, 458, 724
HpyF3I CTNAG 5 cut(s) 407, 1098, 1461, 1557, 1676
HpySE526I ACGT 1 cut(s) 1578
Ksp22I TGATCA 1 cut(s) 615
Kzo9I GATC 8 cut(s) 148, 423, 595, 615, 1211, 1381, 1643, 1659
LmnI GCTCC 5 cut(s) 1013, 1024, 1177, 1429, 1672
Lsp1109I GCAGC 4 cut(s) 634, 1028, 1314, 1661
LweI GCATC 1 cut(s) 1465
MaeI CTAG 3 cut(s) 1230, 1469, 1695
MaeII ACGT 1 cut(s) 1578
MaeIII GTNAC 5 cut(s) 388, 910, 1248, 1274, 1480
MalI GATC 8 cut(s) 150, 425, 597, 617, 1213, 1383, 1645, 1661
MboI GATC 8 cut(s) 148, 423, 595, 615, 1211, 1381, 1643, 1659
MboII GAAGA 6 cut(s) 775, 874, 1055, 1146, 1574, 1669
MfeI CAATTG 4 cut(s) 513, 894, 1158, 1308
MflI RGATCY 4 cut(s) 148, 1211, 1643, 1659
MhlI GDGCHC 2 cut(s) 979, 1677
MmeI TCCRAC 3 cut(s) 519, 805, 1456
Mph1103I ATGCAT 1 cut(s) 454
MseI TTAA 6 cut(s) 26, 438, 582, 876, 950, 995
MslI CAYNNNNRTG 3 cut(s) 129, 1377, 1545
MspI CCGG 1 cut(s) 1209
MspR9I CCNGG 1 cut(s) 525
MunI CAATTG 4 cut(s) 513, 894, 1158, 1308
MvaI CCWGG 1 cut(s) 525
MvnI CGCG 1 cut(s) 1122
MwoI GCNNNNNNNGC 3 cut(s) 328, 458, 724
NcoI CCATGG 1 cut(s) 270
NdeII GATC 8 cut(s) 148, 423, 595, 615, 1211, 1381, 1643, 1659
NlaIV GGNNCC 2 cut(s) 1213, 1489
NsiI ATGCAT 1 cut(s) 454
NspI RCATGY 3 cut(s) 456, 1183, 1376
PciI ACATGT 1 cut(s) 1372
PfeI GAWTC 6 cut(s) 44, 108, 136, 215, 542, 697
PflFI GACNNNGTC 1 cut(s) 265
PfoI TCCNGGA 1 cut(s) 523
PkrI GCNGC 5 cut(s) 624, 637, 1018, 1329, 1651
PpuMI RGGWCCY 1 cut(s) 1256
PscI ACATGT 1 cut(s) 1372
PshBI ATTAAT 1 cut(s) 876
PsiI TTATAA 1 cut(s) 857
Psp124BI GAGCTC 1 cut(s) 1677
Psp5II RGGWCCY 1 cut(s) 1256
Psp6I CCWGG 1 cut(s) 523
PspGI CCWGG 1 cut(s) 523
PspN4I GGNNCC 2 cut(s) 1213, 1489
PspPI GGNCC 3 cut(s) 1057, 1256, 1609
PspPPI RGGWCCY 1 cut(s) 1256
PsrI GAACNNNNNNTAC 2 cut(s) 1233, 1265
PstI CTGCAG 2 cut(s) 1111, 1651
PsuI RGATCY 4 cut(s) 148, 1211, 1643, 1659
PsyI GACNNNGTC 1 cut(s) 265
RseI CAYNNNNRTG 3 cut(s) 129, 1377, 1545
SacI GAGCTC 1 cut(s) 1677
SaqAI TTAA 6 cut(s) 26, 438, 582, 876, 950, 995
SatI GCNGC 5 cut(s) 623, 636, 1017, 1328, 1650
Sau3AI GATC 8 cut(s) 148, 423, 595, 615, 1211, 1381, 1643, 1659
Sau96I GGNCC 3 cut(s) 1057, 1256, 1609
ScrFI CCNGG 1 cut(s) 525
SduI GDGCHC 2 cut(s) 979, 1677
SfaNI GCATC 1 cut(s) 1465
SfcI CTRYAG 3 cut(s) 708, 1107, 1647
SinI GGWCC 2 cut(s) 1256, 1609
SmiMI CAYNNNNRTG 3 cut(s) 129, 1377, 1545
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
SsiI CCGC 3 cut(s) 635, 727, 1122
SspI AATATT 2 cut(s) 939, 1151
SspMI CTAG 3 cut(s) 1230, 1469, 1695
SstI GAGCTC 1 cut(s) 1677
StyD4I CCNGG 1 cut(s) 523
StyI CCWWGG 2 cut(s) 83, 270
TaaI ACNGT 5 cut(s) 558, 712, 983, 1245, 1547
TaiI ACGT 1 cut(s) 1581
TaqI TCGA 2 cut(s) 755, 845
TauI GCSGC 1 cut(s) 638
TfiI GAWTC 6 cut(s) 44, 108, 136, 215, 542, 697
Tru1I TTAA 6 cut(s) 26, 438, 582, 876, 950, 995
Tru9I TTAA 6 cut(s) 26, 438, 582, 876, 950, 995
TscAI CASTG 6 cut(s) 199, 418, 618, 1498, 1524, 1552
TseI GCWGC 4 cut(s) 622, 1016, 1327, 1649
TspDTI ATGAA 6 cut(s) 57, 163, 413, 489, 875, 1046
TspGWI ACGGA 1 cut(s) 1377
TspRI CASTG 6 cut(s) 199, 418, 618, 1498, 1524, 1552
Tth111I GACNNNGTC 1 cut(s) 265
VpaK11BI GGWCC 2 cut(s) 1256, 1609
VspI ATTAAT 1 cut(s) 876
XapI RAATTY 3 cut(s) 590, 866, 1681
XbaI TCTAGA 1 cut(s) 1694
XceI RCATGY 3 cut(s) 456, 1183, 1376
XcmI CCANNNNNNNNNTGG 1 cut(s) 358
XspI CTAG 3 cut(s) 1230, 1469, 1695
Zsp2I ATGCAT 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.