Rw3G019720

4-coumarate--CoA ligase-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
Physical Location & Seq
Reverse (-)
22833361 .. 22835088
1728 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G019720.1

Sequence Viewer

Length: 1614 bp
ATGGCCATTACCTTAAACAACAACTTCAACTATCCCACCTCAAAATCCCAAAAAACCCCGAATCCGGAATCTTTGGCTACCCCGAAGAACCACCCTGAGTGGTTTTCACCAGAAACAGGAATTTACAACAGCACTTACCCTTGTGTTAATCTCCCCTCGGACCCTTTCCTTGATGTTGTGTCGTTCATTTTCTCACACAGCCATAATGGGGTCTCGTCAGCTTTGGTTGATGCCTCATCAGGGTGTTCAGTATCTTACTCGGAACTCTACTCTTTCGTCAGGTCCATGGCCTCGGGACTCCGCAGAATGGGCATTTCACAAGGTGAAATCAAGAAACAGACTGCTGATTGTAATGCCTGTCTTGCTTTTGCTGGACCCGAAAAAGTTGATGCATTGCAAGCATTGGGTGTTCCTACTATTGTGGTGCCGGAAAATGTAATTTTGGGTTCAAAGGCAGAGGCCTTTTCGGAGTTTTATAAGCTTATGTGTAGTAAAGTTGATCAAGCTCCAAGGCTAGTGATTAAGCAGCAAAACACCGCAGCGATACTGTATTCGTCGGGGACTACTGGTGGGAGCAAGGGTGTTGTGCTAACACACAGGAATCTTATAGCTGCAGTGGAGCTCTTTGTGCGTTTTGAGGCTTCACAGTATAACTACACAAGTTTGGAGAATGTGTATTTAGCTATCGTCCCATTCTTCCACATATACGGGTTGTCGCTTTACGTGATGGGGTTGTTGTCTTTGGGGTCCAGAATTATTGTGATGAAGAAATTTGATGTTGACCATGTTGTTAAGTCCATTGATAGGTATAAAGTCACACATTTCCCTCTTGTTCCACCAATCTTAGCAGCATTGACAAAAGAGGTAGCCAAGGATGTGACGGCAGCACATGGTCTTCGGAGTTTAAAGCAGGTTGCTTCTGGAGCAGCTCCTTTGAGCATGAAAATCATAGAGGACTTTGTTCGGGCCCTTCCCCATGTTGATTTTATTCAGGGATATGGCTTGACTGAGACCACTGCAGTAGGAACTCGCGGTTTTAATACTGAAAGGGTTAAGAACTATTCTTCAATAGGACTTTTAGCTCCAAATATGCAAGCTAAAGTAGTAGACTGGAAAACTGGAACCCCTTTGCCTCCAAACAATTCTGGTGAGCTTTGGTTACGCGGGCCAGTGATCATGAAAGAGTACTTGAACAATGCAAAGGCAACCATGTCAACAATTGATGAAGATGGCTGGCTACATACTGGAGACATTGTGTTTTTTAATAAAGATGGGTACATATATATACATGATAGGTTGAAAGAGATTATCAAATACAAGGGCTTTCAGATTGCCCCGGCAGATTTAGAAGCTGTGCTGATTAACCATCCTGAGATAGTAGATGTTGCAGTAACAGCAGCCATGGATGAAGAATGTGGAGAGGTGCCAGTGGCGTTTGTGGTTAGGAAAAATGGCAGTAAACTTTCCTGCAAAGCTGTAATGGATTACGTTGCTGGACATGTTGCTCCACACAAGAAGGTCAGGAAGGTGGTGTTTACAAGTTCAATACCGAAATCTGCAGCTGGAAAGATTCTCAGAAGGGAGATTAGGAATTTATTGACTTCTAGACTCTAA

Protein Analysis

537

Amino Acids

58.84

Weight (kDa)

8.88

Isoelectric Point (pI)

34.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMP-binding PF00501 108 - 397 1.4e-62 AMP-binding enzyme
AMP-binding_C PF13193 449 - 523 2.9e-17 AMP-binding enzyme C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 477
Acc36I ACCTGC 1 cut(s) 901
AccB1I GGYRCC 2 cut(s) 424, 1423
AccI GTMKAC 1 cut(s) 1107
AccII CGCG 2 cut(s) 1032, 1164
AccIII TCCGGA 1 cut(s) 64
AciI CCGC 4 cut(s) 301, 537, 1032, 1164
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 120, 770, 1591
AdeI CACNNNGTG 1 cut(s) 323
AfaI GTAC 2 cut(s) 1187, 1277
AfiI CCNNNNNNNGG 6 cut(s) 64, 116, 208, 240, 307, 804
AflIII ACRYGT 1 cut(s) 1498
AgsI TTSAA 6 cut(s) 28, 450, 1068, 1192, 1300, 1545
Alw21I GWGCWC 1 cut(s) 624
Alw26I GTCTC 3 cut(s) 217, 1004, 1242
Ama87I CYCGRG 1 cut(s) 292
Aor13HI TCCGGA 1 cut(s) 64
AoxI GGCC 5 cut(s) 3, 288, 459, 966, 1166
ApaI GGGCCC 1 cut(s) 970
ApeKI GCWGC 8 cut(s) 526, 539, 611, 848, 884, 926, 1397, 1559
ApoI RAATTY 3 cut(s) 120, 770, 1591
AspS9I GGNCC 7 cut(s) 160, 282, 374, 747, 966, 967, 1166
AsuC2I CCSGG 1 cut(s) 1337
AsuHPI GGTGA 3 cut(s) 99, 335, 1160
AvaI CYCGRG 1 cut(s) 292
AvaII GGWCC 4 cut(s) 160, 282, 374, 747
BaeGI GKGCMC 1 cut(s) 970
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 2 cut(s) 424, 1423
BanII GRGCYC 2 cut(s) 624, 970
BbsI GAAGAC 1 cut(s) 887
Bbv12I GWGCWC 1 cut(s) 624
BbvI GCAGC 8 cut(s) 538, 551, 598, 860, 896, 938, 1409, 1571
BccI CCATC 4 cut(s) 721, 1223, 1265, 1374
BceAI ACGGC 1 cut(s) 897
BclI TGATCA 2 cut(s) 499, 1173
BcnI CCSGG 1 cut(s) 1337
BcoDI GTCTC 3 cut(s) 217, 1004, 1242
BfaI CTAG 2 cut(s) 515, 1605
BfmI CTRYAG 3 cut(s) 612, 1017, 1557
BfuAI ACCTGC 1 cut(s) 901
BisI GCNGC 8 cut(s) 527, 540, 612, 849, 885, 927, 1398, 1560
BlsI GCNGC 8 cut(s) 528, 541, 613, 850, 886, 928, 1399, 1561
BmcAI AGTACT 1 cut(s) 1187
Bme1390I CCNGG 1 cut(s) 1337
Bme18I GGWCC 4 cut(s) 160, 282, 374, 747
BmeT110I CYCGRG 1 cut(s) 292
BmgT120I GGNCC 7 cut(s) 160, 282, 374, 747, 966, 967, 1166
BmiI GGNNCC 7 cut(s) 162, 376, 426, 748, 968, 1123, 1425
BmrFI CCNGG 1 cut(s) 1337
BmsI GCATC 2 cut(s) 220, 379
BpiI GAAGAC 1 cut(s) 887
BpmI CTGGAG 2 cut(s) 942, 1266
BpuMI CCSGG 1 cut(s) 1337
BsaAI YACGTR 1 cut(s) 724
BsaI GGTCTC 2 cut(s) 217, 1004
BsaJI CCNNGG 7 cut(s) 156, 285, 291, 509, 870, 1335, 1401
BsaWI WCCGGW 1 cut(s) 64
BsaXI ACNNNNNCTCC 6 cut(s) 565, 595, 659, 689, 1239, 1269
Bsc4I CCNNNNNNNGG 6 cut(s) 64, 116, 208, 240, 307, 804
Bse1I ACTGG 6 cut(s) 571, 1115, 1123, 1169, 1249, 1427
Bse3DI GCAATG 1 cut(s) 392
BseAI TCCGGA 1 cut(s) 64
BseDI CCNNGG 7 cut(s) 156, 285, 291, 509, 870, 1335, 1401
BseGI GGATG 3 cut(s) 880, 1366, 1411
BseLI CCNNNNNNNGG 6 cut(s) 64, 116, 208, 240, 307, 804
BseMI GCAATG 1 cut(s) 392
BseMII CTCAG 4 cut(s) 87, 999, 1362, 1588
BseNI ACTGG 6 cut(s) 571, 1115, 1123, 1169, 1249, 1427
BseSI GKGCMC 1 cut(s) 970
BseXI GCAGC 8 cut(s) 538, 551, 598, 860, 896, 938, 1409, 1571
Bsh1236I CGCG 2 cut(s) 1032, 1164
BshFI GGCC 5 cut(s) 5, 290, 461, 968, 1168
BshNI GGYRCC 2 cut(s) 424, 1423
BsiHKAI GWGCWC 1 cut(s) 624
BsiHKCI CYCGRG 1 cut(s) 292
BsiSI CCGG 3 cut(s) 65, 428, 1337
BslFI GGGAC 3 cut(s) 309, 574, 674
BslI CCNNNNNNNGG 6 cut(s) 64, 116, 208, 240, 307, 804
BsmAI GTCTC 3 cut(s) 217, 1004, 1242
BsmFI GGGAC 3 cut(s) 309, 574, 674
BsnI GGCC 5 cut(s) 5, 290, 461, 968, 1168
Bso31I GGTCTC 2 cut(s) 217, 1004
BsoBI CYCGRG 1 cut(s) 292
Bsp120I GGGCCC 1 cut(s) 966
Bsp1286I GDGCHC 2 cut(s) 624, 970
Bsp13I TCCGGA 1 cut(s) 64
Bsp143I GATC 2 cut(s) 499, 1173
Bsp19I CCATGG 2 cut(s) 285, 1401
BspACI CCGC 4 cut(s) 301, 537, 1032, 1164
BspANI GGCC 5 cut(s) 5, 290, 461, 968, 1168
BspCNI CTCAG 4 cut(s) 88, 1000, 1363, 1587
BspEI TCCGGA 1 cut(s) 64
BspFNI CGCG 2 cut(s) 1032, 1164
BspHI TCATGA 1 cut(s) 1176
BspLI GGNNCC 7 cut(s) 162, 376, 426, 748, 968, 1123, 1425
BspMAI CTGCAG 3 cut(s) 616, 1021, 1561
BspMI ACCTGC 1 cut(s) 901
BspT107I GGYRCC 2 cut(s) 424, 1423
BspTNI GGTCTC 2 cut(s) 217, 1004
BsrDI GCAATG 1 cut(s) 392
BsrI ACTGG 6 cut(s) 571, 1115, 1123, 1169, 1249, 1427
BssECI CCNNGG 7 cut(s) 156, 285, 291, 509, 870, 1335, 1401
BssMI GATC 2 cut(s) 499, 1173
BssT1I CCWWGG 4 cut(s) 285, 509, 870, 1401
Bst4CI ACNGT 2 cut(s) 549, 648
BstBAI YACGTR 1 cut(s) 724
BstC8I GCNNGC 4 cut(s) 399, 1095, 1166, 1235
BstDEI CTNAG 5 cut(s) 96, 844, 1008, 1371, 1574
BstDSI CCRYGG 2 cut(s) 285, 1401
BstF5I GGATG 3 cut(s) 880, 1366, 1411
BstFNI CGCG 2 cut(s) 1032, 1164
BstKTI GATC 2 cut(s) 502, 1176
BstMAI GTCTC 3 cut(s) 217, 1004, 1242
BstMBI GATC 2 cut(s) 499, 1173
BstMWI GCNNNNNNNGC 6 cut(s) 309, 362, 398, 628, 923, 1394
BstNSI RCATGY 1 cut(s) 1502
BstSCI CCNGG 1 cut(s) 1335
BstSFI CTRYAG 3 cut(s) 612, 1017, 1557
BstSLI GKGCMC 1 cut(s) 970
BstUI CGCG 2 cut(s) 1032, 1164
BstV1I GCAGC 8 cut(s) 538, 551, 598, 860, 896, 938, 1409, 1571
BstV2I GAAGAC 1 cut(s) 887
BsuRI GGCC 5 cut(s) 5, 290, 461, 968, 1168
BtgI CCRYGG 2 cut(s) 285, 1401
BtsCI GGATG 3 cut(s) 880, 1366, 1411
BtsI GCAGTG 2 cut(s) 621, 1014
BtsIMutI CAGTG 4 cut(s) 621, 1014, 1176, 1434
BveI ACCTGC 1 cut(s) 901
Cac8I GCNNGC 4 cut(s) 399, 1095, 1166, 1235
CciI TCATGA 1 cut(s) 1176
Cfr13I GGNCC 7 cut(s) 160, 282, 374, 747, 966, 967, 1166
Csp6I GTAC 2 cut(s) 1186, 1276
CviQI GTAC 2 cut(s) 1186, 1276
DdeI CTNAG 5 cut(s) 96, 844, 1008, 1371, 1574
DpnI GATC 2 cut(s) 501, 1175
DpnII GATC 2 cut(s) 499, 1173
DraI TTTAAA 1 cut(s) 906
DraIII CACNNNGTG 1 cut(s) 323
EaeI YGGCCR 1 cut(s) 3
Ecl136II GAGCTC 1 cut(s) 622
Eco130I CCWWGG 4 cut(s) 285, 509, 870, 1401
Eco147I AGGCCT 1 cut(s) 461
Eco24I GRGCYC 2 cut(s) 624, 970
Eco31I GGTCTC 2 cut(s) 217, 1004
Eco47I GGWCC 4 cut(s) 160, 282, 374, 747
Eco53kI GAGCTC 1 cut(s) 622
Eco88I CYCGRG 1 cut(s) 292
EcoICRI GAGCTC 1 cut(s) 622
EcoO109I RGGNCCY 1 cut(s) 967
EcoT14I CCWWGG 4 cut(s) 285, 509, 870, 1401
EcoT22I ATGCAT 1 cut(s) 394
EcoT38I GRGCYC 2 cut(s) 624, 970
ErhI CCWWGG 4 cut(s) 285, 509, 870, 1401
FaqI GGGAC 3 cut(s) 309, 574, 674
FauI CCCGC 1 cut(s) 1157
FbaI TGATCA 2 cut(s) 499, 1173
FblI GTMKAC 1 cut(s) 1107
Fnu4HI GCNGC 8 cut(s) 527, 540, 612, 849, 885, 927, 1398, 1560
FokI GGATG 3 cut(s) 887, 1353, 1418
FriOI GRGCYC 2 cut(s) 624, 970
Fsp4HI GCNGC 8 cut(s) 527, 540, 612, 849, 885, 927, 1398, 1560
FspBI CTAG 2 cut(s) 515, 1605
GluI GCNGC 8 cut(s) 527, 540, 612, 849, 885, 927, 1398, 1560
GsuI CTGGAG 2 cut(s) 942, 1266
HaeIII GGCC 5 cut(s) 5, 290, 461, 968, 1168
HapII CCGG 3 cut(s) 65, 428, 1337
HincII GTYRAC 2 cut(s) 781, 1215
HindII GTYRAC 2 cut(s) 781, 1215
HindIII AAGCTT 1 cut(s) 479
HinfI GANTC 6 cut(s) 61, 68, 297, 601, 1570, 1608
HpaII CCGG 3 cut(s) 65, 428, 1337
HphI GGTGA 3 cut(s) 99, 335, 1160
Hpy166II GTNNAC 5 cut(s) 781, 1108, 1215, 1460, 1536
Hpy188I TCNGA 6 cut(s) 160, 262, 469, 900, 1329, 1577
Hpy188III TCNNGA 9 cut(s) 65, 294, 331, 750, 921, 1177, 1370, 1522, 1605
Hpy8I GTNNAC 5 cut(s) 781, 1108, 1215, 1460, 1536
Hpy99I CGWCG 1 cut(s) 559
HpyAV CCTTC 4 cut(s) 980, 1510, 1519, 1572
HpyCH4III ACNGT 2 cut(s) 549, 648
HpyCH4IV ACGT 2 cut(s) 723, 1488
HpyCH4V TGCA 9 cut(s) 392, 397, 614, 1019, 1093, 1199, 1388, 1470, 1559
HpyF10VI GCNNNNNNNGC 6 cut(s) 309, 362, 398, 628, 923, 1394
HpyF3I CTNAG 5 cut(s) 96, 844, 1008, 1371, 1574
HpySE526I ACGT 2 cut(s) 723, 1488
Kpn2I TCCGGA 1 cut(s) 64
Ksp22I TGATCA 2 cut(s) 499, 1173
Kzo9I GATC 2 cut(s) 499, 1173
LmnI GCTCC 7 cut(s) 511, 573, 619, 923, 934, 1087, 1510
Lsp1109I GCAGC 8 cut(s) 538, 551, 598, 860, 896, 938, 1409, 1571
LweI GCATC 2 cut(s) 220, 379
MaeI CTAG 2 cut(s) 515, 1605
MaeII ACGT 2 cut(s) 723, 1488
MaeIII GTNAC 4 cut(s) 814, 877, 1158, 1390
MalI GATC 2 cut(s) 501, 1175
MboI GATC 2 cut(s) 499, 1173
MboII GAAGA 7 cut(s) 97, 688, 778, 887, 1056, 1238, 1421
MfeI CAATTG 1 cut(s) 1218
MhlI GDGCHC 2 cut(s) 624, 970
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 7 cut(s) 120, 438, 753, 770, 1141, 1218, 1591
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 2 cut(s) 291, 1602
Mox20I TGGCCA 1 cut(s) 5
Mph1103I ATGCAT 1 cut(s) 394
MroI TCCGGA 1 cut(s) 64
MscI TGGCCA 1 cut(s) 5
MseI TTAA 9 cut(s) 14, 147, 522, 792, 905, 1038, 1053, 1263, 1362
MslI CAYNNNNRTG 1 cut(s) 241
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 1562
MspI CCGG 3 cut(s) 65, 428, 1337
MspR9I CCNGG 1 cut(s) 1337
MunI CAATTG 1 cut(s) 1218
MvnI CGCG 2 cut(s) 1032, 1164
MwoI GCNNNNNNNGC 6 cut(s) 309, 362, 398, 628, 923, 1394
NciI CCSGG 1 cut(s) 1337
NcoI CCATGG 2 cut(s) 285, 1401
NdeII GATC 2 cut(s) 499, 1173
NlaIV GGNNCC 7 cut(s) 162, 376, 426, 748, 968, 1123, 1425
NmuCI GTSAC 2 cut(s) 814, 877
NsiI ATGCAT 1 cut(s) 394
NspI RCATGY 1 cut(s) 1502
PagI TCATGA 1 cut(s) 1176
PceI AGGCCT 1 cut(s) 461
PciI ACATGT 1 cut(s) 1498
PfeI GAWTC 4 cut(s) 61, 68, 601, 1570
PkrI GCNGC 8 cut(s) 528, 541, 613, 850, 886, 928, 1399, 1561
PleI GAGTC 2 cut(s) 291, 1602
PpsI GAGTC 2 cut(s) 291, 1602
Ppu21I YACGTR 1 cut(s) 724
PscI ACATGT 1 cut(s) 1498
PsiI TTATAA 1 cut(s) 477
Psp124BI GAGCTC 1 cut(s) 624
PspN4I GGNNCC 7 cut(s) 162, 376, 426, 748, 968, 1123, 1425
PspOMI GGGCCC 1 cut(s) 966
PspPI GGNCC 7 cut(s) 160, 282, 374, 747, 966, 967, 1166
PstI CTGCAG 3 cut(s) 616, 1021, 1561
PvuII CAGCTG 1 cut(s) 1562
RsaI GTAC 2 cut(s) 1187, 1277
RsaNI GTAC 2 cut(s) 1186, 1276
RseI CAYNNNNRTG 1 cut(s) 241
SacI GAGCTC 1 cut(s) 624
SaqAI TTAA 9 cut(s) 14, 147, 522, 792, 905, 1038, 1053, 1263, 1362
SatI GCNGC 8 cut(s) 527, 540, 612, 849, 885, 927, 1398, 1560
Sau3AI GATC 2 cut(s) 499, 1173
Sau96I GGNCC 7 cut(s) 160, 282, 374, 747, 966, 967, 1166
ScaI AGTACT 1 cut(s) 1187
SchI GAGTC 2 cut(s) 291, 1602
ScrFI CCNGG 1 cut(s) 1337
SduI GDGCHC 2 cut(s) 624, 970
SfaNI GCATC 2 cut(s) 220, 379
SfcI CTRYAG 3 cut(s) 612, 1017, 1557
SinI GGWCC 4 cut(s) 160, 282, 374, 747
SmiMI CAYNNNNRTG 1 cut(s) 241
Sse9I AATT 7 cut(s) 120, 438, 753, 770, 1141, 1218, 1591
SseBI AGGCCT 1 cut(s) 461
SsiI CCGC 4 cut(s) 301, 537, 1032, 1164
SspMI CTAG 2 cut(s) 515, 1605
SstI GAGCTC 1 cut(s) 624
StuI AGGCCT 1 cut(s) 461
StyD4I CCNGG 1 cut(s) 1335
StyI CCWWGG 4 cut(s) 285, 509, 870, 1401
TaaI ACNGT 2 cut(s) 549, 648
TaiI ACGT 2 cut(s) 726, 1491
TasI AATT 7 cut(s) 120, 438, 753, 770, 1141, 1218, 1591
TatI WGTACW 1 cut(s) 1185
TfiI GAWTC 4 cut(s) 61, 68, 601, 1570
Tru1I TTAA 9 cut(s) 14, 147, 522, 792, 905, 1038, 1053, 1263, 1362
Tru9I TTAA 9 cut(s) 14, 147, 522, 792, 905, 1038, 1053, 1263, 1362
TscAI CASTG 4 cut(s) 621, 1021, 1176, 1434
TseFI GTSAC 2 cut(s) 814, 877
TseI GCWGC 8 cut(s) 526, 539, 611, 848, 884, 926, 1397, 1559
Tsp45I GTSAC 2 cut(s) 814, 877
TspDTI ATGAA 6 cut(s) 175, 779, 956, 1193, 1239, 1422
TspRI CASTG 4 cut(s) 621, 1021, 1176, 1434
VpaK11BI GGWCC 4 cut(s) 160, 282, 374, 747
XapI RAATTY 3 cut(s) 120, 770, 1591
XbaI TCTAGA 1 cut(s) 1604
XceI RCATGY 1 cut(s) 1502
XmiI GTMKAC 1 cut(s) 1107
XspI CTAG 2 cut(s) 515, 1605
ZrmI AGTACT 1 cut(s) 1187
Zsp2I ATGCAT 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.