RchiOBHm_Chr3g0478721

4-coumarate--CoA ligase-like

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
Physical Location & Seq
Reverse (-)
24414514 .. 24416242
1729 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ44389

Sequence Viewer

Length: 1674 bp
ATGACCATTACCTTAAACAACAACTTCAACTATCCCACCTCAAAATCCCAAAAAACCCCGAATCCGGAATCTTTGGCTACCCAGAAGAACCACCCTGAGTGGTTTTCACCTGAAACAGGAATCTACCACAGCACTTACCCTTGTGTTAATCTCCCCTCGGACCCTTTTCTTGATGTTGTGTCGTTCATTTTCTCACACAGCCATAATGGGGTCTCATCAGCTTTGGTTGATGCCTCATCAGGGTGTTCAGTATCTTACTCGGAACTCTACTCTTTCGTCAGGTCCATGACCTCGGGACTCCTCCGCAGAATGGGCATTTCACAAGGTGGTGTTGCTTTGATTCTCTTGTCTAATCGCATTTACTACCCCGTTGTGTTCTCGGGTAAATCAAGAAACAGATTTGCTGATTGTAATGCCTGTCTTGCTTTTGCTGGACCCGAAAAAGTTGATGCATTGCAAGCATTGGGTGTTCCTACTATTGTGGTGCCGGAAAATGTAAAATTGGGTTCAAAGGCAGAGGCCTTTTCGGAGTTTTATAAGCTTATGTTTAGTAAAGTTGATCAAGCTCCAAGGCTAGTGCTTAAGCAGCAAGACACCGCAGCGATACTGTATTCGTCGGGGACTACTGGTGGGAGCAAGGTTGTTGTGCTAACACATAGGAATCTTATAGCTGCAGTGGAGCTCTTTGTGCGTTTTGAAGCTTCACAGTATGACTACACAAGTTTGGAGAATGTGTATTTAGCTATCGTCCCATTCTTTCACATATACGGGTTGTCGCTTTACGTGATGGGGTTGTTGTCTTTGGGGTCTAGAATTATTGTGATGAAGAAATTTGATGTTGACCATGTTGTTAAGTCCATTGATAGGTATAAAGTCACACATTTCCCTCTTGTTCCACCAATATTAGCAGCATTGACAAAAAAGGTAGCCAAAGATGTGACGGCAGCACATGGTCTTCGGAGTTTAAAGCAGGTTGCTTCTGGAGCAGCTCCTTTGAGCATGAAAATCATAGAGGACTTTGTTCGGGCCCTTCCTCATGCTGATTTTATTCAGGGATATGGCTTGACTGAGACCACTGCAGTAGGAACTCGCGGTTTTAATACTGAAAGGTTTAAGAACTATTCTTCAATAGGACTTTTAGCTCCAAATATGCAAGCTAAAGTAGTAGACTGGAAAACTGGAACCCCTTTGCCTCCAAACAATTCTGGTGAGCTTTGGTTACGCGGGCCAGCGATCATGAAAGAGTACTTGAACAATGCAAAGGCAACCATGTCAAAAATTGATGAAGATGGCTGGCTACATACTGGAGACATTGTGTTTTTTAATAAAGATGGGTACATATATATACATGATAGGTTGAAGGAGATTATCAAATACAAGGGCTTTCAGATTTCCCCGGCAGAATTAGAAGCGGTGCTGATTAACCATCCTGAGATAGTAGATATTTCAGTAACAGCAGCCATGGATGAAGAATGTGGAGAGGTGCCAGTGGCGTTTGTGGTTAGGAAAAATGGCAGTAAACTTTCCCGCAAAGCTGTAATGGATTACGTTGCTGGACATGTTGCTCCACACAAGAAGGTCAGGAAGGTGGTGTTTACAAGTTCAATACCCAAATCTGCGGCTGGAAAGATTCTCAGAAGGGAGCTTAGGAATTTATTGACTTCTAGACTCTAA

Protein Analysis

557

Amino Acids

61.43

Weight (kDa)

9.28

Isoelectric Point (pI)

34.12

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AMP-binding PF00501 73 - 417 1.4e-67 AMP-binding enzyme
AMP-binding_C PF13193 468 - 543 6.1e-17 AMP-binding enzyme C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 537
Acc36I ACCTGC 1 cut(s) 961
AccB1I GGYRCC 2 cut(s) 484, 1483
AccI GTMKAC 1 cut(s) 1167
AccII CGCG 2 cut(s) 1092, 1224
AccIII TCCGGA 1 cut(s) 64
AciI CCGC 7 cut(s) 304, 597, 1092, 1224, 1412, 1528, 1619
AcsI RAATTY 2 cut(s) 830, 1651
AdeI CACNNNGTG 1 cut(s) 326
AfaI GTAC 2 cut(s) 1247, 1337
AfiI CCNNNNNNNGG 6 cut(s) 64, 116, 208, 240, 310, 864
AflII CTTAAG 1 cut(s) 581
AflIII ACRYGT 1 cut(s) 1558
AgsI TTSAA 7 cut(s) 28, 510, 698, 1128, 1252, 1360, 1605
Alw21I GWGCWC 1 cut(s) 684
Alw26I GTCTC 3 cut(s) 217, 1064, 1302
Ama87I CYCGRG 2 cut(s) 292, 379
Aor13HI TCCGGA 1 cut(s) 64
AoxI GGCC 3 cut(s) 519, 1026, 1226
ApaI GGGCCC 1 cut(s) 1030
ApeKI GCWGC 7 cut(s) 586, 599, 671, 908, 944, 986, 1457
ApoI RAATTY 2 cut(s) 830, 1651
AspS9I GGNCC 6 cut(s) 160, 282, 434, 1026, 1027, 1226
AsuC2I CCSGG 1 cut(s) 1397
AsuHPI GGTGA 2 cut(s) 99, 1220
AvaI CYCGRG 2 cut(s) 292, 379
AvaII GGWCC 3 cut(s) 160, 282, 434
BaeGI GKGCMC 1 cut(s) 1030
BanI GGYRCC 2 cut(s) 484, 1483
BanII GRGCYC 2 cut(s) 684, 1030
BbsI GAAGAC 1 cut(s) 947
Bbv12I GWGCWC 1 cut(s) 684
BbvI GCAGC 7 cut(s) 598, 611, 658, 920, 956, 998, 1469
BccI CCATC 4 cut(s) 781, 1283, 1325, 1434
BceAI ACGGC 1 cut(s) 957
BclI TGATCA 1 cut(s) 559
BcnI CCSGG 1 cut(s) 1397
BcoDI GTCTC 3 cut(s) 217, 1064, 1302
BfaI CTAG 3 cut(s) 575, 810, 1665
BfmI CTRYAG 2 cut(s) 672, 1077
BfrI CTTAAG 1 cut(s) 581
BfuAI ACCTGC 1 cut(s) 961
BisI GCNGC 8 cut(s) 587, 600, 672, 909, 945, 987, 1458, 1620
BlsI GCNGC 8 cut(s) 588, 601, 673, 910, 946, 988, 1459, 1621
BmcAI AGTACT 1 cut(s) 1247
Bme1390I CCNGG 1 cut(s) 1397
Bme18I GGWCC 3 cut(s) 160, 282, 434
BmeT110I CYCGRG 2 cut(s) 292, 379
BmgT120I GGNCC 6 cut(s) 160, 282, 434, 1026, 1027, 1226
BmiI GGNNCC 6 cut(s) 162, 436, 486, 1028, 1183, 1485
BmrFI CCNGG 1 cut(s) 1397
BmsI GCATC 2 cut(s) 220, 439
BpiI GAAGAC 1 cut(s) 947
BpmI CTGGAG 2 cut(s) 1002, 1326
Bpu10I CCTNAGC 1 cut(s) 1646
BpuMI CCSGG 1 cut(s) 1397
BsaAI YACGTR 1 cut(s) 784
BsaI GGTCTC 2 cut(s) 217, 1064
BsaJI CCNNGG 5 cut(s) 156, 291, 569, 1395, 1461
BsaWI WCCGGW 1 cut(s) 64
BsaXI ACNNNNNCTCC 4 cut(s) 719, 749, 1299, 1329
Bsc4I CCNNNNNNNGG 6 cut(s) 64, 116, 208, 240, 310, 864
Bse1I ACTGG 5 cut(s) 631, 1175, 1183, 1309, 1487
Bse3DI GCAATG 1 cut(s) 452
BseAI TCCGGA 1 cut(s) 64
BseDI CCNNGG 5 cut(s) 156, 291, 569, 1395, 1461
BseGI GGATG 2 cut(s) 1426, 1471
BseLI CCNNNNNNNGG 6 cut(s) 64, 116, 208, 240, 310, 864
BseMI GCAATG 1 cut(s) 452
BseMII CTCAG 4 cut(s) 87, 1059, 1422, 1648
BseNI ACTGG 5 cut(s) 631, 1175, 1183, 1309, 1487
BseRI GAGGAG 1 cut(s) 290
BseSI GKGCMC 1 cut(s) 1030
BseXI GCAGC 7 cut(s) 598, 611, 658, 920, 956, 998, 1469
Bsh1236I CGCG 2 cut(s) 1092, 1224
BshFI GGCC 3 cut(s) 521, 1028, 1228
BshNI GGYRCC 2 cut(s) 484, 1483
BsiHKAI GWGCWC 1 cut(s) 684
BsiHKCI CYCGRG 2 cut(s) 292, 379
BsiSI CCGG 3 cut(s) 65, 488, 1397
BslFI GGGAC 3 cut(s) 309, 634, 734
BslI CCNNNNNNNGG 6 cut(s) 64, 116, 208, 240, 310, 864
BsmAI GTCTC 3 cut(s) 217, 1064, 1302
BsmFI GGGAC 3 cut(s) 309, 634, 734
BsnI GGCC 3 cut(s) 521, 1028, 1228
Bso31I GGTCTC 2 cut(s) 217, 1064
BsoBI CYCGRG 2 cut(s) 292, 379
Bsp120I GGGCCC 1 cut(s) 1026
Bsp1286I GDGCHC 2 cut(s) 684, 1030
Bsp13I TCCGGA 1 cut(s) 64
Bsp143I GATC 2 cut(s) 559, 1233
Bsp19I CCATGG 1 cut(s) 1461
BspACI CCGC 7 cut(s) 304, 597, 1092, 1224, 1412, 1528, 1619
BspANI GGCC 3 cut(s) 521, 1028, 1228
BspCNI CTCAG 4 cut(s) 88, 1060, 1423, 1647
BspEI TCCGGA 1 cut(s) 64
BspFNI CGCG 2 cut(s) 1092, 1224
BspHI TCATGA 1 cut(s) 1236
BspLI GGNNCC 6 cut(s) 162, 436, 486, 1028, 1183, 1485
BspMAI CTGCAG 2 cut(s) 676, 1081
BspMI ACCTGC 1 cut(s) 961
BspT107I GGYRCC 2 cut(s) 484, 1483
BspTI CTTAAG 1 cut(s) 581
BspTNI GGTCTC 2 cut(s) 217, 1064
BsrDI GCAATG 1 cut(s) 452
BsrI ACTGG 5 cut(s) 631, 1175, 1183, 1309, 1487
BssECI CCNNGG 5 cut(s) 156, 291, 569, 1395, 1461
BssMI GATC 2 cut(s) 559, 1233
BssT1I CCWWGG 2 cut(s) 569, 1461
Bst4CI ACNGT 2 cut(s) 609, 708
BstAFI CTTAAG 1 cut(s) 581
BstBAI YACGTR 1 cut(s) 784
BstC8I GCNNGC 5 cut(s) 459, 1155, 1226, 1230, 1295
BstDEI CTNAG 5 cut(s) 96, 1068, 1431, 1634, 1646
BstDSI CCRYGG 1 cut(s) 1461
BstENI CCTNNNNNAGG 1 cut(s) 114
BstF5I GGATG 2 cut(s) 1426, 1471
BstFNI CGCG 2 cut(s) 1092, 1224
BstKTI GATC 2 cut(s) 562, 1236
BstMAI GTCTC 3 cut(s) 217, 1064, 1302
BstMBI GATC 2 cut(s) 559, 1233
BstMWI GCNNNNNNNGC 6 cut(s) 312, 422, 458, 586, 688, 983
BstNSI RCATGY 1 cut(s) 1562
BstSCI CCNGG 1 cut(s) 1395
BstSFI CTRYAG 2 cut(s) 672, 1077
BstSLI GKGCMC 1 cut(s) 1030
BstUI CGCG 2 cut(s) 1092, 1224
BstV1I GCAGC 7 cut(s) 598, 611, 658, 920, 956, 998, 1469
BstV2I GAAGAC 1 cut(s) 947
BsuRI GGCC 3 cut(s) 521, 1028, 1228
BtgI CCRYGG 1 cut(s) 1461
BtsCI GGATG 2 cut(s) 1426, 1471
BtsI GCAGTG 2 cut(s) 681, 1074
BtsIMutI CAGTG 3 cut(s) 681, 1074, 1494
BveI ACCTGC 1 cut(s) 961
Cac8I GCNNGC 5 cut(s) 459, 1155, 1226, 1230, 1295
CciI TCATGA 1 cut(s) 1236
Cfr13I GGNCC 6 cut(s) 160, 282, 434, 1026, 1027, 1226
Csp6I GTAC 2 cut(s) 1246, 1336
CviQI GTAC 2 cut(s) 1246, 1336
DdeI CTNAG 5 cut(s) 96, 1068, 1431, 1634, 1646
DpnI GATC 2 cut(s) 561, 1235
DpnII GATC 2 cut(s) 559, 1233
DraI TTTAAA 1 cut(s) 966
DraIII CACNNNGTG 1 cut(s) 326
Ecl136II GAGCTC 1 cut(s) 682
Eco130I CCWWGG 2 cut(s) 569, 1461
Eco147I AGGCCT 1 cut(s) 521
Eco24I GRGCYC 2 cut(s) 684, 1030
Eco31I GGTCTC 2 cut(s) 217, 1064
Eco47I GGWCC 3 cut(s) 160, 282, 434
Eco53kI GAGCTC 1 cut(s) 682
Eco88I CYCGRG 2 cut(s) 292, 379
EcoICRI GAGCTC 1 cut(s) 682
EcoNI CCTNNNNNAGG 1 cut(s) 114
EcoO109I RGGNCCY 1 cut(s) 1027
EcoT14I CCWWGG 2 cut(s) 569, 1461
EcoT22I ATGCAT 1 cut(s) 454
EcoT38I GRGCYC 2 cut(s) 684, 1030
ErhI CCWWGG 2 cut(s) 569, 1461
FaqI GGGAC 3 cut(s) 309, 634, 734
FauI CCCGC 2 cut(s) 1217, 1535
FbaI TGATCA 1 cut(s) 559
FblI GTMKAC 1 cut(s) 1167
Fnu4HI GCNGC 8 cut(s) 587, 600, 672, 909, 945, 987, 1458, 1620
FokI GGATG 2 cut(s) 1413, 1478
FriOI GRGCYC 2 cut(s) 684, 1030
Fsp4HI GCNGC 8 cut(s) 587, 600, 672, 909, 945, 987, 1458, 1620
FspBI CTAG 3 cut(s) 575, 810, 1665
GluI GCNGC 8 cut(s) 587, 600, 672, 909, 945, 987, 1458, 1620
GsuI CTGGAG 2 cut(s) 1002, 1326
HaeIII GGCC 3 cut(s) 521, 1028, 1228
HapII CCGG 3 cut(s) 65, 488, 1397
HincII GTYRAC 1 cut(s) 841
HindII GTYRAC 1 cut(s) 841
HindIII AAGCTT 2 cut(s) 539, 699
HinfI GANTC 8 cut(s) 61, 68, 120, 297, 340, 661, 1630, 1668
HpaII CCGG 3 cut(s) 65, 488, 1397
HphI GGTGA 2 cut(s) 99, 1220
Hpy166II GTNNAC 4 cut(s) 841, 1168, 1520, 1596
Hpy188I TCNGA 6 cut(s) 160, 262, 529, 960, 1389, 1637
Hpy8I GTNNAC 4 cut(s) 841, 1168, 1520, 1596
Hpy99I CGWCG 1 cut(s) 619
HpyAV CCTTC 5 cut(s) 1040, 1354, 1570, 1579, 1632
HpyCH4III ACNGT 2 cut(s) 609, 708
HpyCH4IV ACGT 2 cut(s) 783, 1548
HpyCH4V TGCA 6 cut(s) 452, 457, 674, 1079, 1153, 1259
HpyF10VI GCNNNNNNNGC 6 cut(s) 312, 422, 458, 586, 688, 983
HpyF3I CTNAG 5 cut(s) 96, 1068, 1431, 1634, 1646
HpySE526I ACGT 2 cut(s) 783, 1548
Kpn2I TCCGGA 1 cut(s) 64
Ksp22I TGATCA 1 cut(s) 559
Kzo9I GATC 2 cut(s) 559, 1233
LmnI GCTCC 8 cut(s) 571, 633, 679, 983, 994, 1147, 1570, 1642
Lsp1109I GCAGC 7 cut(s) 598, 611, 658, 920, 956, 998, 1469
LweI GCATC 2 cut(s) 220, 439
MaeI CTAG 3 cut(s) 575, 810, 1665
MaeII ACGT 2 cut(s) 783, 1548
MaeIII GTNAC 4 cut(s) 874, 937, 1218, 1450
MalI GATC 2 cut(s) 561, 1235
MboI GATC 2 cut(s) 559, 1233
MboII GAAGA 6 cut(s) 97, 838, 947, 1116, 1298, 1481
MhlI GDGCHC 2 cut(s) 684, 1030
MluCI AATT 7 cut(s) 500, 813, 830, 1201, 1278, 1403, 1651
MlyI GAGTC 2 cut(s) 291, 1662
Mph1103I ATGCAT 1 cut(s) 454
MroI TCCGGA 1 cut(s) 64
MseI TTAA 9 cut(s) 14, 147, 582, 852, 965, 1098, 1113, 1323, 1422
MslI CAYNNNNRTG 1 cut(s) 241
MspCI CTTAAG 1 cut(s) 581
MspI CCGG 3 cut(s) 65, 488, 1397
MspR9I CCNGG 1 cut(s) 1397
MvnI CGCG 2 cut(s) 1092, 1224
MwoI GCNNNNNNNGC 6 cut(s) 312, 422, 458, 586, 688, 983
NciI CCSGG 1 cut(s) 1397
NcoI CCATGG 1 cut(s) 1461
NdeII GATC 2 cut(s) 559, 1233
NlaIV GGNNCC 6 cut(s) 162, 436, 486, 1028, 1183, 1485
NmuCI GTSAC 2 cut(s) 874, 937
NsiI ATGCAT 1 cut(s) 454
NspI RCATGY 1 cut(s) 1562
PagI TCATGA 1 cut(s) 1236
PceI AGGCCT 1 cut(s) 521
PciI ACATGT 1 cut(s) 1558
PfeI GAWTC 6 cut(s) 61, 68, 120, 340, 661, 1630
PkrI GCNGC 8 cut(s) 588, 601, 673, 910, 946, 988, 1459, 1621
PleI GAGTC 2 cut(s) 291, 1662
PpsI GAGTC 2 cut(s) 291, 1662
Ppu21I YACGTR 1 cut(s) 784
PscI ACATGT 1 cut(s) 1558
PsiI TTATAA 1 cut(s) 537
Psp124BI GAGCTC 1 cut(s) 684
PspN4I GGNNCC 6 cut(s) 162, 436, 486, 1028, 1183, 1485
PspOMI GGGCCC 1 cut(s) 1026
PspPI GGNCC 6 cut(s) 160, 282, 434, 1026, 1027, 1226
PstI CTGCAG 2 cut(s) 676, 1081
RsaI GTAC 2 cut(s) 1247, 1337
RsaNI GTAC 2 cut(s) 1246, 1336
RseI CAYNNNNRTG 1 cut(s) 241
SacI GAGCTC 1 cut(s) 684
SaqAI TTAA 9 cut(s) 14, 147, 582, 852, 965, 1098, 1113, 1323, 1422
SatI GCNGC 8 cut(s) 587, 600, 672, 909, 945, 987, 1458, 1620
Sau3AI GATC 2 cut(s) 559, 1233
Sau96I GGNCC 6 cut(s) 160, 282, 434, 1026, 1027, 1226
ScaI AGTACT 1 cut(s) 1247
SchI GAGTC 2 cut(s) 291, 1662
ScrFI CCNGG 1 cut(s) 1397
SduI GDGCHC 2 cut(s) 684, 1030
SfaNI GCATC 2 cut(s) 220, 439
SfcI CTRYAG 2 cut(s) 672, 1077
SinI GGWCC 3 cut(s) 160, 282, 434
SmiMI CAYNNNNRTG 1 cut(s) 241
SmlI CTYRAG 1 cut(s) 581
SmoI CTYRAG 1 cut(s) 581
Sse9I AATT 7 cut(s) 500, 813, 830, 1201, 1278, 1403, 1651
SseBI AGGCCT 1 cut(s) 521
SsiI CCGC 7 cut(s) 304, 597, 1092, 1224, 1412, 1528, 1619
SspI AATATT 1 cut(s) 903
SspMI CTAG 3 cut(s) 575, 810, 1665
SstI GAGCTC 1 cut(s) 684
StuI AGGCCT 1 cut(s) 521
StyD4I CCNGG 1 cut(s) 1395
StyI CCWWGG 2 cut(s) 569, 1461
TaaI ACNGT 2 cut(s) 609, 708
TaiI ACGT 2 cut(s) 786, 1551
TasI AATT 7 cut(s) 500, 813, 830, 1201, 1278, 1403, 1651
TatI WGTACW 1 cut(s) 1245
TauI GCSGC 1 cut(s) 1622
TfiI GAWTC 6 cut(s) 61, 68, 120, 340, 661, 1630
Tru1I TTAA 9 cut(s) 14, 147, 582, 852, 965, 1098, 1113, 1323, 1422
Tru9I TTAA 9 cut(s) 14, 147, 582, 852, 965, 1098, 1113, 1323, 1422
TscAI CASTG 3 cut(s) 681, 1081, 1494
TseFI GTSAC 2 cut(s) 874, 937
TseI GCWGC 7 cut(s) 586, 599, 671, 908, 944, 986, 1457
Tsp45I GTSAC 2 cut(s) 874, 937
TspDTI ATGAA 6 cut(s) 175, 839, 1016, 1253, 1299, 1482
TspRI CASTG 3 cut(s) 681, 1081, 1494
Vha464I CTTAAG 1 cut(s) 581
VpaK11BI GGWCC 3 cut(s) 160, 282, 434
XagI CCTNNNNNAGG 1 cut(s) 114
XapI RAATTY 2 cut(s) 830, 1651
XbaI TCTAGA 2 cut(s) 809, 1664
XceI RCATGY 1 cut(s) 1562
XmiI GTMKAC 1 cut(s) 1167
XspI CTAG 3 cut(s) 575, 810, 1665
ZrmI AGTACT 1 cut(s) 1247
Zsp2I ATGCAT 1 cut(s) 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.