Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0005432

Physical Location & Seq

Genomic Coordinates Reverse (-)

4447475 .. 4448948

Gene Structure 1474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g04570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1284 bp

ATGGGGTTTCGCTTTCACCTGCCCTCATTGATTCCTCACATGGGCCCTCACTTTCTTACTCCCAGCTCTACTCTTTTGTCAAAGCATTTGCATGTGGCCTCCCAAAAATGGTTGGGGGTTTCACAAGGTGACGTTGTTCTGATCCTTTTGCCGAATTCCATTTACTATCCCATTGTTTTCTTGGGAGTTTTGCACGCTGGTGCAATCGTCACGACGATGAATCCTCTCAGCAGTGTCGTGGAAATCAAGAAACAGGTTGGTGGTTTGAAAGCGTGTCGTGCTTTTACTGGACTTGAATACGTTGGTAAGCTATATGCATTGGATGTTATTGTGCCGGAAAATGCAGTTTCGGATTCGAAGAATGATGAGCAGGACACCACGGTGATAATGTATTCTTCGGGGACTACTGATGCGAGCAAAGGTGCTATGATCACACGCAGGAATTTCATAGCTGGTTCGAGTTTGAGCAATGTGTATTTGGATGTTCTTCCGTTGTTTCATATTTACGGGTTCTCCCTTTTCGTGATGGGGTTGTTGTCTTTAGGATCAAGAATTGTTGTGATGAAGAAATTTGATGTCAATGAGGTGGTTAACGCAATTGATGAGTACAAAGTTACACACTTTCCGGTCGTTCCGCCAATTTTAACACCTCAAGAGTTTGAAGCAGGTTTGTTCAGGTTTCTTCGTCATGCGGATTTGATTCAGGGTTATGGAATGACTGAGACCACTGCAGTAGGAACTCGCGGTTTCAACATCGAAAGCCTTAAAAAACCTTCTTCAATAGGGCTTTTAGCTCCAAACACGCAGGCCAAAGTGGTGGATTGGAAAACAGGATCCTCCCTGCCTCCAACAAGTAGCGGTGAGCTGTGGCTACGCGGGCCTGCCATGAATGCATACTTAAACAATGTCGAGGCAACAATGTCGACAACTGATGAAGAGGGTTGGCTGCAAAAAGGGGGCGTTGTGTGCTTTCATGAAGACGGATACTTAAACCTACAAGACCGGCTTAAAGACGCGATCAAATACAAGGGGTTTCAGATTGCACCGGCAGATTTAGAAAGTGTATGGCGGATGAAGAAAGTGGGGAGATATAGACCAATGGCATTTGTGGTGAGGAAGCACGGAAGTCGAATTTCAGAGGAGAATGTGATGGATTTTGTGGCTGCACAGGTTGCTTCATACAAGAAGGTAAGGAAGATGGTTTTTCCAGATTCAATTCCAAAGTCTGCAGCTGGGAAGATCCTAAGAAGGGAGCTTAGGAAGTTCTTGACTTCTAGACTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005777 GO:0006732 GO:0006733 GO:0006743 GO:0006744 GO:0008150 GO:0008152 GO:0009058 GO:0009108 GO:0009987 GO:0016405 GO:0016874 GO:0016877 GO:0042180 GO:0042181 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044249 GO:0044281 GO:0044283 GO:0044424 GO:0044444 GO:0044464 GO:0051186 GO:0051188 GO:0071704 GO:1901576 GO:1901661 GO:1901663

KEGG Pathways

Metabolic & Signaling

ko00130 ko00360 ko00940 ko01100 ko01110 map00130 map00360 map00940 map01100 map01110

Pfam Domains

Protein Families

AMP-binding AMP-binding_C

Protein Analysis

428

Amino Acids

47.26

Weight (kDa)

9.41

Isoelectric Point (pI)

38.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AMP-binding	PF00501	38 - 215	1e-32	AMP-binding enzyme
AMP-binding	PF00501	228 - 296	1.1e-16	AMP-binding enzyme
AMP-binding_C	PF13193	365 - 413	5.7e-06	AMP-binding enzyme C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005432)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G19010
fragaria_vesca	FvH4_5g23550
malus_domestica	MD14G1050700.v1.1
prunus_persica	Prupe.7G085200_v2.0.a1 Prupe.8G160600_v2.0.a1
pyrus_communis	pycom12g04570 pycom14g04200
rosa_chinensis	RchiOBHm_Chr3g0478721 RchiOBHm_Chr7g0212861
rosa_laevigata	RLG00000002864 RLG00000023630
rosa_multiflora	Rmu_sc0000394.1_g000050 Rmu_sc0001519.1_g000013
rosa_roxburghii	Rroxscaffold_3G00246500 Rroxscaffold_6G00403160
rosa_rugosa	Rorug03G0167300 Rorug03G0167400 Rorug07G0137100
rosa_samantha	Rh3AG219500 Rh3BG251200 Rh3CG248100 Rh3CG248200 Rh3DG244500 Rh7BG264300 Rh7CG287700 Rh7DG276800
rosa_wichuraiana	Rw3G019720 Rw7G023220 Rw7G023340

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	27
Acc36I	ACCTGC	2 cut(s)	27, 656
AccI	GTMKAC	1 cut(s)	923
AccII	CGCG	3 cut(s)	744, 876, 1016
AciI	CCGC	6 cut(s)	635, 692, 744, 858, 876, 1069
AclWI	GGATC	5 cut(s)	136, 553, 828, 841, 1234
AcsI	RAATTY	4 cut(s)	154, 442, 569, 1131
AdeI	CACNNNGTG	1 cut(s)	128
AfaI	GTAC	1 cut(s)	608
AfiI	CCNNNNNNNGG	3 cut(s)	41, 108, 1249
AgsI	TTSAA	6 cut(s)	268, 296, 662, 751, 780, 1215
AleI	CACNNNNGTG	2 cut(s)	198, 380
AluBI	AGCT	7 cut(s)	66, 310, 452, 794, 865, 1232, 1255
AluI	AGCT	7 cut(s)	66, 310, 452, 794, 865, 1232, 1255
Alw26I	GTCTC	1 cut(s)	716
AlwI	GGATC	5 cut(s)	136, 553, 828, 841, 1234
AoxI	GGCC	4 cut(s)	43, 96, 807, 878
ApaI	GGGCCC	1 cut(s)	47
ApeKI	GCWGC	3 cut(s)	946, 1163, 1229
ApoI	RAATTY	4 cut(s)	154, 442, 569, 1131
AspS9I	GGNCC	3 cut(s)	43, 44, 878
AsuHPI	GGTGA	5 cut(s)	8, 140, 394, 872, 1123
AsuII	TTCGAA	1 cut(s)	356
BaeGI	GKGCMC	1 cut(s)	47
BamHI	GGATCC	1 cut(s)	833
BanII	GRGCYC	1 cut(s)	47
BbsI	GAAGAC	1 cut(s)	984
BbvI	GCAGC	3 cut(s)	933, 1150, 1241
BccI	CCATC	3 cut(s)	520, 1144, 1192
BcgI	CGANNNNNNTGC	4 cut(s)	903, 937, 1109, 1143
BciVI	GTATCC	1 cut(s)	977
BclI	TGATCA	1 cut(s)	429
BcoDI	GTCTC	1 cut(s)	716
BfaI	CTAG	2 cut(s)	1275, 1282
BfmI	CTRYAG	2 cut(s)	729, 1227
BfuAI	ACCTGC	2 cut(s)	27, 656
BfuI	GTATCC	1 cut(s)	977
BisI	GCNGC	3 cut(s)	947, 1164, 1230
BlsI	GCNGC	3 cut(s)	948, 1165, 1231
BmgT120I	GGNCC	3 cut(s)	43, 44, 878
BmiI	GGNNCC	2 cut(s)	45, 835
BmsI	GCATC	1 cut(s)	400
BpiI	GAAGAC	1 cut(s)	984
Bpu10I	CCTNAGC	1 cut(s)	1256
Bpu14I	TTCGAA	1 cut(s)	356
BpuEI	CTTGAG	1 cut(s)	636
BsaI	GGTCTC	1 cut(s)	716
BsaJI	CCNNGG	1 cut(s)	378
BsaWI	WCCGGW	1 cut(s)	625
BsaXI	ACNNNNNCTCC	2 cut(s)	497, 527
Bsc4I	CCNNNNNNNGG	3 cut(s)	41, 108, 1249
Bse118I	RCCGGY	2 cut(s)	1002, 1045
Bse1I	ACTGG	1 cut(s)	292
Bse3DI	GCAATG	1 cut(s)	475
BseDI	CCNNGG	1 cut(s)	378
BseGI	GGATG	3 cut(s)	328, 487, 1077
BseLI	CCNNNNNNNGG	3 cut(s)	41, 108, 1249
BseMI	GCAATG	1 cut(s)	475
BseMII	CTCAG	2 cut(s)	241, 711
BseNI	ACTGG	1 cut(s)	292
BseRI	GAGGAG	1 cut(s)	1154
BseSI	GKGCMC	1 cut(s)	47
BseXI	GCAGC	3 cut(s)	933, 1150, 1241
BseYI	CCCAGC	2 cut(s)	62, 1232
BsgI	GTGCAG	1 cut(s)	1149
Bsh1236I	CGCG	3 cut(s)	744, 876, 1016
Bsh1285I	CGRYCG	1 cut(s)	630
BshFI	GGCC	4 cut(s)	45, 98, 809, 880
BsiEI	CGRYCG	1 cut(s)	630
BsiSI	CCGG	4 cut(s)	335, 626, 1003, 1046
BslFI	GGGAC	1 cut(s)	415
BslI	CCNNNNNNNGG	3 cut(s)	41, 108, 1249
BsmAI	GTCTC	1 cut(s)	716
BsmFI	GGGAC	1 cut(s)	415
BsmI	GAATGC	1 cut(s)	895
BsnI	GGCC	4 cut(s)	45, 98, 809, 880
Bso31I	GGTCTC	1 cut(s)	716
Bsp119I	TTCGAA	1 cut(s)	356
Bsp120I	GGGCCC	1 cut(s)	43
Bsp1286I	GDGCHC	1 cut(s)	47
Bsp143I	GATC	6 cut(s)	141, 429, 545, 833, 1017, 1239
BspACI	CCGC	6 cut(s)	635, 692, 744, 858, 876, 1069
BspANI	GGCC	4 cut(s)	45, 98, 809, 880
BspCNI	CTCAG	2 cut(s)	240, 712
BspFNI	CGCG	3 cut(s)	744, 876, 1016
BspHI	TCATGA	1 cut(s)	973
BspLI	GGNNCC	2 cut(s)	45, 835
BspMAI	CTGCAG	2 cut(s)	733, 1231
BspMI	ACCTGC	2 cut(s)	27, 656
BspPI	GGATC	5 cut(s)	136, 553, 828, 841, 1234
BspT104I	TTCGAA	1 cut(s)	356
BspTNI	GGTCTC	1 cut(s)	716
BsrDI	GCAATG	1 cut(s)	475
BsrFI	RCCGGY	2 cut(s)	1002, 1045
BsrI	ACTGG	1 cut(s)	292
BssAI	RCCGGY	2 cut(s)	1002, 1045
BssECI	CCNNGG	1 cut(s)	378
BssMI	GATC	6 cut(s)	141, 429, 545, 833, 1017, 1239
Bst4CI	ACNGT	1 cut(s)	382
Bst6I	CTCTTC	1 cut(s)	930
BstAPI	GCANNNNNTGC	1 cut(s)	1172
BstBI	TTCGAA	1 cut(s)	356
BstC8I	GCNNGC	5 cut(s)	195, 415, 807, 878, 882
BstDEI	CTNAG	4 cut(s)	227, 720, 1244, 1256
BstDSI	CCRYGG	1 cut(s)	378
BstF5I	GGATG	3 cut(s)	328, 487, 1077
BstFNI	CGCG	3 cut(s)	744, 876, 1016
BstKTI	GATC	6 cut(s)	144, 432, 548, 836, 1020, 1242
BstMAI	GTCTC	1 cut(s)	716
BstMBI	GATC	6 cut(s)	141, 429, 545, 833, 1017, 1239
BstMCI	CGRYCG	1 cut(s)	630
BstMWI	GCNNNNNNNGC	5 cut(s)	278, 877, 890, 966, 1172
BstNSI	RCATGY	1 cut(s)	95
BstSFI	CTRYAG	2 cut(s)	729, 1227
BstSLI	GKGCMC	1 cut(s)	47
BstUI	CGCG	3 cut(s)	744, 876, 1016
BstV1I	GCAGC	3 cut(s)	933, 1150, 1241
BstV2I	GAAGAC	1 cut(s)	984
BstX2I	RGATCY	2 cut(s)	833, 1239
BstXI	CCANNNNNNTGG	1 cut(s)	817
BstYI	RGATCY	2 cut(s)	833, 1239
BsuI	GTATCC	1 cut(s)	977
BsuRI	GGCC	4 cut(s)	45, 98, 809, 880
BtgI	CCRYGG	1 cut(s)	378
BtsCI	GGATG	3 cut(s)	328, 487, 1077
BtsI	GCAGTG	2 cut(s)	238, 726
BtsIMutI	CAGTG	2 cut(s)	238, 726
BveI	ACCTGC	2 cut(s)	27, 656
Cac8I	GCNNGC	5 cut(s)	195, 415, 807, 878, 882
CciI	TCATGA	1 cut(s)	973
Cfr10I	RCCGGY	2 cut(s)	1002, 1045
Cfr13I	GGNCC	3 cut(s)	43, 44, 878
CseI	GACGC	1 cut(s)	1022
Csp6I	GTAC	1 cut(s)	607
CviAII	CATG	5 cut(s)	40, 92, 689, 886, 974
CviQI	GTAC	1 cut(s)	607
DdeI	CTNAG	4 cut(s)	227, 720, 1244, 1256
DpnI	GATC	6 cut(s)	143, 431, 547, 835, 1019, 1241
DpnII	GATC	6 cut(s)	141, 429, 545, 833, 1017, 1239
DraIII	CACNNNGTG	1 cut(s)	128
Eam1104I	CTCTTC	1 cut(s)	930
EarI	CTCTTC	1 cut(s)	930
EciI	GGCGGA	2 cut(s)	624, 1084
Eco24I	GRGCYC	1 cut(s)	47
Eco31I	GGTCTC	1 cut(s)	716
EcoO109I	RGGNCCY	1 cut(s)	44
EcoRI	GAATTC	1 cut(s)	154
EcoT22I	ATGCAT	2 cut(s)	319, 895
EcoT38I	GRGCYC	1 cut(s)	47
FaeI	CATG	5 cut(s)	43, 95, 692, 889, 977
FalI	AAGNNNNNCTT	2 cut(s)	990, 1022
FaqI	GGGAC	1 cut(s)	415
FatI	CATG	5 cut(s)	39, 91, 688, 885, 973
FauI	CCCGC	1 cut(s)	869
FbaI	TGATCA	1 cut(s)	429
FblI	GTMKAC	1 cut(s)	923
Fnu4HI	GCNGC	3 cut(s)	947, 1164, 1230
FokI	GGATG	3 cut(s)	335, 494, 1084
FriOI	GRGCYC	1 cut(s)	47
Fsp4HI	GCNGC	3 cut(s)	947, 1164, 1230
FspBI	CTAG	2 cut(s)	1275, 1282
GluI	GCNGC	3 cut(s)	947, 1164, 1230
GsaI	CCCAGC	2 cut(s)	66, 1236
HaeIII	GGCC	4 cut(s)	45, 98, 809, 880
HapII	CCGG	4 cut(s)	335, 626, 1003, 1046
HgaI	GACGC	1 cut(s)	1022
Hin1II	CATG	5 cut(s)	43, 95, 692, 889, 977
HincII	GTYRAC	2 cut(s)	592, 924
HindII	GTYRAC	2 cut(s)	592, 924
HinfI	GANTC	6 cut(s)	31, 220, 353, 700, 1211, 1278
HpaI	GTTAAC	1 cut(s)	592
HpaII	CCGG	4 cut(s)	335, 626, 1003, 1046
HphI	GGTGA	5 cut(s)	8, 140, 394, 872, 1123
Hpy166II	GTNNAC	2 cut(s)	592, 924
Hpy188I	TCNGA	4 cut(s)	141, 352, 1038, 1138
Hpy188III	TCNNGA	9 cut(s)	211, 247, 523, 549, 653, 974, 1208, 1267, 1275
Hpy8I	GTNNAC	2 cut(s)	592, 924
Hpy99I	CGWCG	1 cut(s)	217
HpyAV	CCTTC	3 cut(s)	783, 1180, 1242
HpyCH4III	ACNGT	1 cut(s)	382
HpyCH4IV	ACGT	2 cut(s)	132, 300
HpyF10VI	GCNNNNNNNGC	5 cut(s)	278, 877, 890, 966, 1172
HpyF3I	CTNAG	4 cut(s)	227, 720, 1244, 1256
HpySE526I	ACGT	2 cut(s)	132, 300
Hsp92II	CATG	5 cut(s)	43, 95, 692, 889, 977
Ksp22I	TGATCA	1 cut(s)	429
KspAI	GTTAAC	1 cut(s)	592
Kzo9I	GATC	6 cut(s)	141, 429, 545, 833, 1017, 1239
LmnI	GCTCC	2 cut(s)	799, 1252
Lsp1109I	GCAGC	3 cut(s)	933, 1150, 1241
LweI	GCATC	1 cut(s)	400
MaeI	CTAG	2 cut(s)	1275, 1282
MaeII	ACGT	2 cut(s)	132, 300
MaeIII	GTNAC	3 cut(s)	128, 208, 613
MalI	GATC	6 cut(s)	143, 431, 547, 835, 1019, 1241
MboI	GATC	6 cut(s)	141, 429, 545, 833, 1017, 1239
MfeI	CAATTG	1 cut(s)	597
MflI	RGATCY	2 cut(s)	833, 1239
MhlI	GDGCHC	1 cut(s)	47
MluCI	AATT	8 cut(s)	154, 442, 552, 569, 597, 639, 1131, 1215
MlyI	GAGTC	1 cut(s)	1272
MmeI	TCCRAC	1 cut(s)	872
Mph1103I	ATGCAT	2 cut(s)	319, 895
MseI	TTAA	6 cut(s)	591, 644, 765, 899, 989, 1008
MslI	CAYNNNNRTG	4 cut(s)	90, 198, 215, 380
MspA1I	CMGCKG	1 cut(s)	1232
MspI	CCGG	4 cut(s)	335, 626, 1003, 1046
MunI	CAATTG	1 cut(s)	597
Mva1269I	GAATGC	1 cut(s)	895
MvnI	CGCG	3 cut(s)	744, 876, 1016
MwoI	GCNNNNNNNGC	5 cut(s)	278, 877, 890, 966, 1172
NdeII	GATC	6 cut(s)	141, 429, 545, 833, 1017, 1239
NlaIII	CATG	5 cut(s)	43, 95, 692, 889, 977
NlaIV	GGNNCC	2 cut(s)	45, 835
NmuCI	GTSAC	2 cut(s)	128, 208
NsiI	ATGCAT	2 cut(s)	319, 895
NspI	RCATGY	1 cut(s)	95
NspV	TTCGAA	1 cut(s)	356
OliI	CACNNNNGTG	2 cut(s)	198, 380
PagI	TCATGA	1 cut(s)	973
PaqCI	CACCTGC	1 cut(s)	27
PctI	GAATGC	1 cut(s)	895
PfeI	GAWTC	5 cut(s)	31, 220, 353, 700, 1211
PkrI	GCNGC	3 cut(s)	948, 1165, 1231
PleI	GAGTC	1 cut(s)	1272
PpsI	GAGTC	1 cut(s)	1272
PspFI	CCCAGC	2 cut(s)	62, 1232
PspN4I	GGNNCC	2 cut(s)	45, 835
PspOMI	GGGCCC	1 cut(s)	43
PspPI	GGNCC	3 cut(s)	43, 44, 878
PstI	CTGCAG	2 cut(s)	733, 1231
PsuI	RGATCY	2 cut(s)	833, 1239
PvuII	CAGCTG	1 cut(s)	1232
RsaI	GTAC	1 cut(s)	608
RsaNI	GTAC	1 cut(s)	607
RseI	CAYNNNNRTG	4 cut(s)	90, 198, 215, 380
SalI	GTCGAC	1 cut(s)	922
SaqAI	TTAA	6 cut(s)	591, 644, 765, 899, 989, 1008
SatI	GCNGC	3 cut(s)	947, 1164, 1230
Sau3AI	GATC	6 cut(s)	141, 429, 545, 833, 1017, 1239
Sau96I	GGNCC	3 cut(s)	43, 44, 878
SchI	GAGTC	1 cut(s)	1272
SduI	GDGCHC	1 cut(s)	47
SfaNI	GCATC	1 cut(s)	400
SfcI	CTRYAG	2 cut(s)	729, 1227
SfuI	TTCGAA	1 cut(s)	356
SmiMI	CAYNNNNRTG	4 cut(s)	90, 198, 215, 380
SmlI	CTYRAG	1 cut(s)	651
SmoI	CTYRAG	1 cut(s)	651
Sse9I	AATT	8 cut(s)	154, 442, 552, 569, 597, 639, 1131, 1215
SsiI	CCGC	6 cut(s)	635, 692, 744, 858, 876, 1069
SspMI	CTAG	2 cut(s)	1275, 1282
TaaI	ACNGT	1 cut(s)	382
TaiI	ACGT	2 cut(s)	135, 303
TaqI	TCGA	6 cut(s)	356, 458, 756, 909, 923, 1129
TasI	AATT	8 cut(s)	154, 442, 552, 569, 597, 639, 1131, 1215
TatI	WGTACW	1 cut(s)	606
TfiI	GAWTC	5 cut(s)	31, 220, 353, 700, 1211
Tru1I	TTAA	6 cut(s)	591, 644, 765, 899, 989, 1008
Tru9I	TTAA	6 cut(s)	591, 644, 765, 899, 989, 1008
TscAI	CASTG	2 cut(s)	238, 733
TseFI	GTSAC	2 cut(s)	128, 208
TseI	GCWGC	3 cut(s)	946, 1163, 1229
Tsp45I	GTSAC	2 cut(s)	128, 208
TspGWI	ACGGA	3 cut(s)	480, 996, 1137
TspRI	CASTG	2 cut(s)	238, 733
XapI	RAATTY	4 cut(s)	154, 442, 569, 1131
XbaI	TCTAGA	1 cut(s)	1274
XceI	RCATGY	1 cut(s)	95
XcmI	CCANNNNNNNNNTGG	1 cut(s)	178
XmiI	GTMKAC	1 cut(s)	923
XspI	CTAG	2 cut(s)	1275, 1282
Zsp2I	ATGCAT	2 cut(s)	319, 895

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.