FvH4_6g01880

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0006115
Physical Location & Seq
Reverse (-)
1040215 .. 1043938
3724 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g01880.t1

Sequence Viewer

Length: 723 bp
ATGGCGACTCCACCGTCCTCTACAGCTCCGCCCTCCGCCGCCTCCCAATTCACCTACTCCAACCCCTCCTCCTCCTCCTACTTCCCAATGCCCTTCCACCTCCAGCAACCCCAATACCCGGCCCCTTACGCCGCCGCCGTCCCTCCCGCCCCCGCCGTCGTCTACCCCGCTCCCGCCCCCGCCTACTCTCTCCCCCAGCAGTATCAACAGGCTCAGCAGTTGTTTCAGAGAGACGCGCAGACGATCACGCCGGAGGCTCTGGAGAGCGTGAAGGCTGCGCTTGCGAATAGTGAAATTGAGCACAAGGCCGAGGCTAAGAAGAAGGCGATTCCTCGAAAGGCTGCCGGGCAGGCTTGGGAGGATCCCACCCTCGCAGAGTGGCCCGAAAATGATTATCGCCTGTTTTGTGGTGATCTTGGTAATGAGGTGAATGATGATGTTCTTTCAAAAGCATTTACTCGATTCCCTTCCTTTAACATGGCCAGAGTTGTCAGAGACAAGAGGACTGGAAAAACTAAGGGATTTGGATTTGTTAGCTTTGCTAGCCCTTCGGACCTGGCTGGAGCACTCAAGGAAATGAATGGCAAGTATGTGGGGAATCGGCCTATCAAACTGCGGAAAAGTAACTGGAGGGAGAGGATAGATTATGATGCATTAGAGAAACAAAAGAACTTCTCTCATAAGAAGCCGAAGCTTTCAAAGAAGAGTGTACTACACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

241

Amino Acids

26.63

Weight (kDa)

9.6

Isoelectric Point (pI)

50.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 134 - 204 7.8e-18 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 13
AccBSI CCGCTC 1 cut(s) 170
AccI GTMKAC 1 cut(s) 162
AccII CGCG 1 cut(s) 236
AclWI GGATC 2 cut(s) 356, 369
AcoI YGGCCR 1 cut(s) 480
AfaI GTAC 1 cut(s) 711
AfiI CCNNNNNNNGG 1 cut(s) 118
AgsI TTSAA 2 cut(s) 447, 699
AjnI CCWGG 1 cut(s) 555
AluBI AGCT 3 cut(s) 26, 537, 694
AluI AGCT 3 cut(s) 26, 537, 694
Alw21I GWGCWC 2 cut(s) 303, 568
Alw26I GTCTC 2 cut(s) 225, 489
AlwI GGATC 2 cut(s) 356, 369
AoxI GGCC 5 cut(s) 120, 306, 380, 480, 602
ApeKI GCWGC 2 cut(s) 275, 341
AspLEI GCGC 2 cut(s) 238, 280
AspS9I GGNCC 3 cut(s) 121, 381, 553
AsuC2I CCSGG 2 cut(s) 119, 346
AsuHPI GGTGA 3 cut(s) 43, 422, 439
AsuNHI GCTAGC 1 cut(s) 542
AvaII GGWCC 1 cut(s) 553
BalI TGGCCA 1 cut(s) 482
BamHI GGATCC 1 cut(s) 361
Bbv12I GWGCWC 2 cut(s) 303, 568
BbvI GCAGC 2 cut(s) 262, 328
BceAI ACGGC 2 cut(s) 122, 140
BciT130I CCWGG 1 cut(s) 557
BcnI CCSGG 2 cut(s) 119, 346
BcoDI GTCTC 2 cut(s) 225, 489
BfaI CTAG 1 cut(s) 543
BfmI CTRYAG 1 cut(s) 21
BglI GCCNNNNNGGC 1 cut(s) 350
BisI GCNGC 5 cut(s) 39, 132, 135, 276, 342
BlpI GCTNAGC 1 cut(s) 213
BlsI GCNGC 5 cut(s) 40, 133, 136, 277, 343
Bme1390I CCNGG 3 cut(s) 119, 346, 557
Bme18I GGWCC 1 cut(s) 553
BmgT120I GGNCC 3 cut(s) 121, 381, 553
BmiI GGNNCC 2 cut(s) 123, 363
BmrFI CCNGG 3 cut(s) 119, 346, 557
BmsI GCATC 1 cut(s) 640
BmtI GCTAGC 1 cut(s) 546
BpmI CTGGAG 4 cut(s) 86, 281, 582, 649
Bpu1102I GCTNAGC 1 cut(s) 213
BpuEI CTTGAG 1 cut(s) 554
BpuMI CCSGG 2 cut(s) 119, 346
BsaJI CCNNGG 1 cut(s) 309
BsaXI ACNNNNNCTCC 2 cut(s) 53, 83
Bsc4I CCNNNNNNNGG 1 cut(s) 118
Bse1I ACTGG 2 cut(s) 511, 632
BseBI CCWGG 1 cut(s) 557
BseDI CCNNGG 1 cut(s) 309
BseLI CCNNNNNNNGG 1 cut(s) 118
BseMII CTCAG 1 cut(s) 227
BseNI ACTGG 2 cut(s) 511, 632
BseRI GAGGAG 3 cut(s) 58, 61, 64
BseXI GCAGC 2 cut(s) 262, 328
BseYI CCCAGC 1 cut(s) 195
Bsh1236I CGCG 1 cut(s) 236
BshFI GGCC 5 cut(s) 122, 308, 382, 482, 604
BsiHKAI GWGCWC 2 cut(s) 303, 568
BsiSI CCGG 3 cut(s) 119, 251, 345
BslFI GGGAC 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 118
BsmAI GTCTC 2 cut(s) 225, 489
BsmBI CGTCTC 1 cut(s) 225
BsmFI GGGAC 1 cut(s) 125
BsnI GGCC 5 cut(s) 122, 308, 382, 482, 604
Bsp1286I GDGCHC 2 cut(s) 303, 568
Bsp143I GATC 3 cut(s) 243, 361, 412
Bsp1720I GCTNAGC 1 cut(s) 213
BspANI GGCC 5 cut(s) 122, 308, 382, 482, 604
BspCNI CTCAG 1 cut(s) 226
BspFNI CGCG 1 cut(s) 236
BspLI GGNNCC 2 cut(s) 123, 363
BspOI GCTAGC 1 cut(s) 546
BspPI GGATC 2 cut(s) 356, 369
BsrBI CCGCTC 1 cut(s) 170
BsrI ACTGG 2 cut(s) 511, 632
BssECI CCNNGG 1 cut(s) 309
BssMI GATC 3 cut(s) 243, 361, 412
Bst2UI CCWGG 1 cut(s) 557
Bst4CI ACNGT 1 cut(s) 15
Bst6I CTCTTC 1 cut(s) 698
BstC8I GCNNGC 3 cut(s) 282, 351, 544
BstDEI CTNAG 3 cut(s) 213, 315, 516
BstFNI CGCG 1 cut(s) 236
BstHHI GCGC 2 cut(s) 238, 280
BstKTI GATC 3 cut(s) 246, 364, 415
BstMAI GTCTC 2 cut(s) 225, 489
BstMBI GATC 3 cut(s) 243, 361, 412
BstMWI GCNNNNNNNGC 4 cut(s) 128, 281, 350, 543
BstNI CCWGG 1 cut(s) 557
BstSCI CCNGG 3 cut(s) 117, 344, 555
BstSFI CTRYAG 1 cut(s) 21
BstUI CGCG 1 cut(s) 236
BstV1I GCAGC 2 cut(s) 262, 328
BstX2I RGATCY 1 cut(s) 361
BstYI RGATCY 1 cut(s) 361
BsuRI GGCC 5 cut(s) 122, 308, 382, 482, 604
Cac8I GCNNGC 3 cut(s) 282, 351, 544
CfoI GCGC 2 cut(s) 238, 280
Cfr13I GGNCC 3 cut(s) 121, 381, 553
CseI GACGC 1 cut(s) 242
Csp6I GTAC 1 cut(s) 710
CviAII CATG 1 cut(s) 478
CviQI GTAC 1 cut(s) 710
DdeI CTNAG 3 cut(s) 213, 315, 516
DpnI GATC 3 cut(s) 245, 363, 414
DpnII GATC 3 cut(s) 243, 361, 412
DrdI GACNNNNNNGTC 1 cut(s) 13
DseDI GACNNNNNNGTC 1 cut(s) 13
EaeI YGGCCR 1 cut(s) 480
Eam1104I CTCTTC 1 cut(s) 698
EarI CTCTTC 1 cut(s) 698
EciI GGCGGA 2 cut(s) 18, 25
Eco47I GGWCC 1 cut(s) 553
EcoRII CCWGG 1 cut(s) 555
EcoT22I ATGCAT 1 cut(s) 655
Esp3I CGTCTC 1 cut(s) 225
FaeI CATG 1 cut(s) 481
FaiI YATR 4 cut(s) 479, 591, 648, 681
FaqI GGGAC 1 cut(s) 125
FatI CATG 1 cut(s) 477
FauI CCCGC 5 cut(s) 154, 160, 175, 181, 187
FblI GTMKAC 1 cut(s) 162
Fnu4HI GCNGC 5 cut(s) 39, 132, 135, 276, 342
Fsp4HI GCNGC 5 cut(s) 39, 132, 135, 276, 342
FspBI CTAG 1 cut(s) 543
GlaI GCGC 2 cut(s) 237, 279
GluI GCNGC 5 cut(s) 39, 132, 135, 276, 342
GsaI CCCAGC 1 cut(s) 199
GsuI CTGGAG 4 cut(s) 86, 281, 582, 649
HaeIII GGCC 5 cut(s) 122, 308, 382, 482, 604
HapII CCGG 3 cut(s) 119, 251, 345
HgaI GACGC 1 cut(s) 242
HhaI GCGC 2 cut(s) 238, 280
Hin1II CATG 1 cut(s) 481
Hin6I GCGC 2 cut(s) 236, 278
HinP1I GCGC 2 cut(s) 236, 278
HindIII AAGCTT 1 cut(s) 692
HinfI GANTC 4 cut(s) 7, 328, 462, 598
HpaII CCGG 3 cut(s) 119, 251, 345
HphI GGTGA 3 cut(s) 43, 422, 439
Hpy166II GTNNAC 2 cut(s) 163, 710
Hpy188I TCNGA 3 cut(s) 228, 494, 553
Hpy188III TCNNGA 1 cut(s) 260
Hpy8I GTNNAC 2 cut(s) 163, 710
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 5 cut(s) 103, 265, 316, 477, 558
HpyCH4III ACNGT 1 cut(s) 15
HpyCH4V TGCA 1 cut(s) 653
HpyF10VI GCNNNNNNNGC 4 cut(s) 128, 281, 350, 543
HpyF3I CTNAG 3 cut(s) 213, 315, 516
Hsp92II CATG 1 cut(s) 481
HspAI GCGC 2 cut(s) 236, 278
Kzo9I GATC 3 cut(s) 243, 361, 412
LmnI GCTCC 3 cut(s) 31, 175, 563
Lsp1109I GCAGC 2 cut(s) 262, 328
LweI GCATC 1 cut(s) 640
MaeI CTAG 1 cut(s) 543
MaeIII GTNAC 1 cut(s) 623
MalI GATC 3 cut(s) 245, 363, 414
MbiI CCGCTC 1 cut(s) 170
MboI GATC 3 cut(s) 243, 361, 412
MboII GAAGA 2 cut(s) 331, 715
MflI RGATCY 1 cut(s) 361
MhlI GDGCHC 2 cut(s) 303, 568
MlsI TGGCCA 1 cut(s) 482
MluCI AATT 2 cut(s) 47, 294
MluNI TGGCCA 1 cut(s) 482
MmeI TCCRAC 1 cut(s) 84
Mox20I TGGCCA 1 cut(s) 482
Mph1103I ATGCAT 1 cut(s) 655
MscI TGGCCA 1 cut(s) 482
MseI TTAA 1 cut(s) 474
Msp20I TGGCCA 1 cut(s) 482
MspI CCGG 3 cut(s) 119, 251, 345
MspR9I CCNGG 3 cut(s) 119, 346, 557
MvaI CCWGG 1 cut(s) 557
MvnI CGCG 1 cut(s) 236
MwoI GCNNNNNNNGC 4 cut(s) 128, 281, 350, 543
NciI CCSGG 2 cut(s) 119, 346
NdeII GATC 3 cut(s) 243, 361, 412
NheI GCTAGC 1 cut(s) 542
NlaIII CATG 1 cut(s) 481
NlaIV GGNNCC 2 cut(s) 123, 363
NmeAIII GCCGAG 1 cut(s) 334
NsiI ATGCAT 1 cut(s) 655
PcsI WCGNNNNNNNCGW 1 cut(s) 135
PfeI GAWTC 3 cut(s) 328, 462, 598
PkrI GCNGC 5 cut(s) 40, 133, 136, 277, 343
Psp6I CCWGG 1 cut(s) 555
PspFI CCCAGC 1 cut(s) 195
PspGI CCWGG 1 cut(s) 555
PspN4I GGNNCC 2 cut(s) 123, 363
PspPI GGNCC 3 cut(s) 121, 381, 553
PsuI RGATCY 1 cut(s) 361
RsaI GTAC 1 cut(s) 711
RsaNI GTAC 1 cut(s) 710
SaqAI TTAA 1 cut(s) 474
SatI GCNGC 5 cut(s) 39, 132, 135, 276, 342
Sau3AI GATC 3 cut(s) 243, 361, 412
Sau96I GGNCC 3 cut(s) 121, 381, 553
ScrFI CCNGG 3 cut(s) 119, 346, 557
SduI GDGCHC 2 cut(s) 303, 568
SetI ASST 7 cut(s) 28, 56, 102, 429, 539, 558, 696
SfaNI GCATC 1 cut(s) 640
SfcI CTRYAG 1 cut(s) 21
SinI GGWCC 1 cut(s) 553
SmlI CTYRAG 1 cut(s) 569
SmoI CTYRAG 1 cut(s) 569
Sse9I AATT 2 cut(s) 47, 294
SspMI CTAG 1 cut(s) 543
StyD4I CCNGG 3 cut(s) 117, 344, 555
TaaI ACNGT 1 cut(s) 15
TaqI TCGA 2 cut(s) 334, 460
TasI AATT 2 cut(s) 47, 294
TatI WGTACW 1 cut(s) 709
TauI GCSGC 3 cut(s) 41, 134, 137
TfiI GAWTC 3 cut(s) 328, 462, 598
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TseI GCWGC 2 cut(s) 275, 341
TspDTI ATGAA 1 cut(s) 593
VpaK11BI GGWCC 1 cut(s) 553
XmiI GTMKAC 1 cut(s) 162
XspI CTAG 1 cut(s) 543
Zsp2I ATGCAT 1 cut(s) 655
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.