Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006115

Physical Location & Seq

Genomic Coordinates Forward (+)

29857353 .. 29860416

Gene Structure 3064 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G350000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGCGACCCCACCGTCTTCTTCCACAGCTCCTGCATCGACTTCCTCTCAATTCACATACGCCAACGCTTCGTCGTCATCGTCCTACTTCCCCATGCCCTTTCACCTCCAGCAACCCCAGTATCCCACGCCTTACGCCGCTGCAGCGCCACCAGCCCCGCCCGTCTACCCAGCCCCGGCCCCGGCCCCGGCCCCGACCTCTGGTGTCTACTCTCTCCCTCAGCAGTATCAACAGGCTCAGCAGTTATTTCAAAGGGATGCACAGACGATTACACCTGAAGCTCTTGAGAGTGTGAAAGCTGCCCTGGCAAACAGTGAAATCGAGCACAAAGCTGAAGCTAAGAAGAAAGCCATCCCCCGTAAAGCTGCTGGGCAGTCTTGGGAGGACCCAACTCTTGCAGAATGGCCAGAAAATGATTATCGCCTATTTTGTGGTGATCTTGGTAATGAGGTGAATGATGATGTCCTTTCAAAAGCATTTTCACGATTTCCTTCCTTTAACATGGCCAGAGTTGTTAGAGATAAGAGGACTGGCAAAACCAAGGGCTTTGGATTTGTTAGCTTTGCCAACCCTTCTGACCTGGCCGGAGCACTCAAGGAAATGAATGGTAAATATGTGGGAAATCGACCAATCAAACTTCGCAAAAGTAACTGGAGGGAGAGGATAGATTATGACGCACTAGACAGACAAAAGAACTACAGTCAGAAGAAACCAAAGCTTTCGAAGAAGAGTATTTTGCACAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

249

Amino Acids

27.39

Weight (kDa)

9.6

Isoelectric Point (pI)

53.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04500 AT3G04500 AT3G04500
fragaria_vesca	FvH4_5g31050 FvH4_6g01880 FvH4_6g01880
malus_domestica	MD04G1229900.v1.1 MD12G1247000.v1.1 MD12G1247100.v1.1 MD12G1247300.v1.1
prunus_persica	Prupe.6G350000_v2.0.a1
pyrus_communis	pycom04g20370 pycom04g20380 pycom12g22690
rosa_chinensis	RchiOBHm_Chr1g0368131 RchiOBHm_Chr3g0449621
rosa_laevigata	RLG00000025814
rosa_multiflora	Rmu_sc0024237.1_g000001 Rmu_sc0038999.1_g000001 Rmu_ssc0000031.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427520
rosa_rugosa	Rorug02G0622600
rosa_samantha	Rh1AG346200 Rh1BG308500 Rh1CG324200 Rh1DG340600
rosa_wichuraiana	Rw3G001670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	13
AccI	GTMKAC	2 cut(s)	165, 207
AciI	CCGC	2 cut(s)	138, 158
AcoI	YGGCCR	3 cut(s)	404, 504, 582
AcuI	CTGAAG	2 cut(s)	297, 354
AfiI	CCNNNNNNNGG	4 cut(s)	175, 181, 187, 200
AgsI	TTSAA	2 cut(s)	251, 471
AjnI	CCWGG	2 cut(s)	303, 579
AluBI	AGCT	8 cut(s)	29, 281, 299, 332, 338, 365, 561, 718
AluI	AGCT	8 cut(s)	29, 281, 299, 332, 338, 365, 561, 718
Alw21I	GWGCWC	2 cut(s)	327, 592
AlwNI	CAGNNNCTG	1 cut(s)	32
AoxI	GGCC	6 cut(s)	177, 183, 189, 404, 504, 582
ApeKI	GCWGC	4 cut(s)	140, 143, 299, 365
AspLEI	GCGC	1 cut(s)	148
AspS9I	GGNCC	4 cut(s)	178, 184, 190, 385
AsuC2I	CCSGG	3 cut(s)	176, 182, 188
AsuHPI	GGTGA	3 cut(s)	95, 446, 463
AsuII	TTCGAA	1 cut(s)	722
AvaII	GGWCC	1 cut(s)	385
BaeI	ACNNNNGTAYC	2 cut(s)	104, 137
BalI	TGGCCA	2 cut(s)	406, 506
BbsI	GAAGAC	1 cut(s)	9
Bbv12I	GWGCWC	2 cut(s)	327, 592
BbvCI	CCTCAGC	1 cut(s)	219
BbvI	GCAGC	4 cut(s)	127, 155, 286, 352
BccI	CCATC	1 cut(s)	359
BciT130I	CCWGG	2 cut(s)	305, 581
BciVI	GTATCC	1 cut(s)	132
BcnI	CCSGG	3 cut(s)	176, 182, 188
BfaI	CTAG	1 cut(s)	680
BfmI	CTRYAG	2 cut(s)	141, 697
BfoI	RGCGCY	1 cut(s)	149
BfuI	GTATCC	1 cut(s)	132
BisI	GCNGC	5 cut(s)	138, 141, 144, 300, 366
BlpI	GCTNAGC	1 cut(s)	237
BlsI	GCNGC	5 cut(s)	139, 142, 145, 301, 367
Bme1390I	CCNGG	5 cut(s)	176, 182, 188, 305, 581
Bme18I	GGWCC	1 cut(s)	385
BmgT120I	GGNCC	4 cut(s)	178, 184, 190, 385
BmiI	GGNNCC	4 cut(s)	180, 186, 192, 387
BmrFI	CCNGG	5 cut(s)	176, 182, 188, 305, 581
BmrI	ACTGGG	1 cut(s)	112
BmsI	GCATC	2 cut(s)	44, 247
BmuI	ACTGGG	1 cut(s)	112
BpiI	GAAGAC	1 cut(s)	9
BpmI	CTGGAG	2 cut(s)	92, 673
Bpu10I	CCTNAGC	1 cut(s)	219
Bpu1102I	GCTNAGC	1 cut(s)	237
Bpu14I	TTCGAA	1 cut(s)	722
BpuEI	CTTGAG	2 cut(s)	305, 578
BpuMI	CCSGG	3 cut(s)	176, 182, 188
BsaJI	CCNNGG	5 cut(s)	174, 180, 186, 303, 540
Bsc4I	CCNNNNNNNGG	4 cut(s)	175, 181, 187, 200
Bse1I	ACTGG	3 cut(s)	118, 535, 656
BseBI	CCWGG	2 cut(s)	305, 581
BseDI	CCNNGG	5 cut(s)	174, 180, 186, 303, 540
BseGI	GGATG	2 cut(s)	262, 351
BseLI	CCNNNNNNNGG	4 cut(s)	175, 181, 187, 200
BseMII	CTCAG	2 cut(s)	233, 251
BseNI	ACTGG	3 cut(s)	118, 535, 656
BseXI	GCAGC	4 cut(s)	127, 155, 286, 352
BseYI	CCCAGC	2 cut(s)	169, 368
BshFI	GGCC	6 cut(s)	179, 185, 191, 406, 506, 584
BsiHKAI	GWGCWC	2 cut(s)	327, 592
BsiSI	CCGG	4 cut(s)	176, 182, 188, 585
BslI	CCNNNNNNNGG	4 cut(s)	175, 181, 187, 200
BsnI	GGCC	6 cut(s)	179, 185, 191, 406, 506, 584
Bsp119I	TTCGAA	1 cut(s)	722
Bsp1286I	GDGCHC	2 cut(s)	327, 592
Bsp143I	GATC	1 cut(s)	436
Bsp1720I	GCTNAGC	1 cut(s)	237
BspACI	CCGC	2 cut(s)	138, 158
BspANI	GGCC	6 cut(s)	179, 185, 191, 406, 506, 584
BspCNI	CTCAG	2 cut(s)	232, 250
BspLI	GGNNCC	4 cut(s)	180, 186, 192, 387
BspMAI	CTGCAG	1 cut(s)	145
BspT104I	TTCGAA	1 cut(s)	722
BsrI	ACTGG	3 cut(s)	118, 535, 656
BssECI	CCNNGG	5 cut(s)	174, 180, 186, 303, 540
BssMI	GATC	1 cut(s)	436
BssT1I	CCWWGG	1 cut(s)	540
Bst2UI	CCWGG	2 cut(s)	305, 581
Bst4CI	ACNGT	3 cut(s)	15, 314, 701
Bst6I	CTCTTC	1 cut(s)	722
BstBI	TTCGAA	1 cut(s)	722
BstDEI	CTNAG	3 cut(s)	219, 237, 339
BstF5I	GGATG	2 cut(s)	262, 351
BstH2I	RGCGCY	1 cut(s)	149
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	1 cut(s)	439
BstMBI	GATC	1 cut(s)	436
BstMWI	GCNNNNNNNGC	3 cut(s)	143, 152, 305
BstNI	CCWGG	2 cut(s)	305, 581
BstSCI	CCNGG	5 cut(s)	174, 180, 186, 303, 579
BstSFI	CTRYAG	2 cut(s)	141, 697
BstV1I	GCAGC	4 cut(s)	127, 155, 286, 352
BstV2I	GAAGAC	1 cut(s)	9
BsuI	GTATCC	1 cut(s)	132
BsuRI	GGCC	6 cut(s)	179, 185, 191, 406, 506, 584
BtsCI	GGATG	2 cut(s)	262, 351
BtsIMutI	CAGTG	1 cut(s)	319
CaiI	CAGNNNCTG	1 cut(s)	32
CfoI	GCGC	1 cut(s)	148
Cfr13I	GGNCC	4 cut(s)	178, 184, 190, 385
CseI	GACGC	1 cut(s)	683
CviAII	CATG	2 cut(s)	94, 502
DdeI	CTNAG	3 cut(s)	219, 237, 339
DpnI	GATC	1 cut(s)	438
DpnII	GATC	1 cut(s)	436
DrdI	GACNNNNNNGTC	1 cut(s)	13
DseDI	GACNNNNNNGTC	1 cut(s)	13
EaeI	YGGCCR	3 cut(s)	404, 504, 582
Eam1104I	CTCTTC	1 cut(s)	722
EarI	CTCTTC	1 cut(s)	722
Eco130I	CCWWGG	1 cut(s)	540
Eco47I	GGWCC	1 cut(s)	385
Eco57I	CTGAAG	2 cut(s)	297, 354
EcoO109I	RGGNCCY	1 cut(s)	385
EcoRII	CCWGG	2 cut(s)	303, 579
EcoT14I	CCWWGG	1 cut(s)	540
ErhI	CCWWGG	1 cut(s)	540
FaeI	CATG	2 cut(s)	97, 505
FaiI	YATR	5 cut(s)	58, 95, 503, 615, 672
FatI	CATG	2 cut(s)	93, 501
FauI	CCCGC	1 cut(s)	165
FblI	GTMKAC	2 cut(s)	165, 207
Fnu4HI	GCNGC	5 cut(s)	138, 141, 144, 300, 366
FokI	GGATG	2 cut(s)	269, 338
Fsp4HI	GCNGC	5 cut(s)	138, 141, 144, 300, 366
FspBI	CTAG	1 cut(s)	680
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	5 cut(s)	138, 141, 144, 300, 366
GsaI	CCCAGC	2 cut(s)	173, 372
GsuI	CTGGAG	2 cut(s)	92, 673
HaeII	RGCGCY	1 cut(s)	149
HaeIII	GGCC	6 cut(s)	179, 185, 191, 406, 506, 584
HapII	CCGG	4 cut(s)	176, 182, 188, 585
HgaI	GACGC	1 cut(s)	683
HhaI	GCGC	1 cut(s)	148
Hin1II	CATG	2 cut(s)	97, 505
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HindIII	AAGCTT	1 cut(s)	716
HpaII	CCGG	4 cut(s)	176, 182, 188, 585
HphI	GGTGA	3 cut(s)	95, 446, 463
Hpy166II	GTNNAC	2 cut(s)	166, 208
Hpy188I	TCNGA	2 cut(s)	577, 705
Hpy188III	TCNNGA	2 cut(s)	284, 483
Hpy8I	GTNNAC	2 cut(s)	166, 208
Hpy99I	CGWCG	1 cut(s)	76
HpyAV	CCTTC	2 cut(s)	501, 582
HpyCH4III	ACNGT	3 cut(s)	15, 314, 701
HpyCH4V	TGCA	5 cut(s)	35, 143, 260, 398, 739
HpyF10VI	GCNNNNNNNGC	3 cut(s)	143, 152, 305
HpyF3I	CTNAG	3 cut(s)	219, 237, 339
Hsp92II	CATG	2 cut(s)	97, 505
HspAI	GCGC	1 cut(s)	146
Kzo9I	GATC	1 cut(s)	436
LmnI	GCTCC	2 cut(s)	34, 587
Lsp1109I	GCAGC	4 cut(s)	127, 155, 286, 352
LweI	GCATC	2 cut(s)	44, 247
MaeI	CTAG	1 cut(s)	680
MaeIII	GTNAC	1 cut(s)	647
MalI	GATC	1 cut(s)	438
MboI	GATC	1 cut(s)	436
MboII	GAAGA	6 cut(s)	9, 12, 355, 718, 736, 739
MhlI	GDGCHC	2 cut(s)	327, 592
MlsI	TGGCCA	2 cut(s)	406, 506
MluCI	AATT	1 cut(s)	50
MluNI	TGGCCA	2 cut(s)	406, 506
MnlI	CCTC	9 cut(s)	55, 116, 208, 228, 376, 442, 519, 648, 654
Mox20I	TGGCCA	2 cut(s)	406, 506
MscI	TGGCCA	2 cut(s)	406, 506
MseI	TTAA	1 cut(s)	498
Msp20I	TGGCCA	2 cut(s)	406, 506
MspA1I	CMGCKG	1 cut(s)	140
MspI	CCGG	4 cut(s)	176, 182, 188, 585
MspR9I	CCNGG	5 cut(s)	176, 182, 188, 305, 581
MvaI	CCWGG	2 cut(s)	305, 581
MwoI	GCNNNNNNNGC	3 cut(s)	143, 152, 305
NciI	CCSGG	3 cut(s)	176, 182, 188
NdeII	GATC	1 cut(s)	436
NlaIII	CATG	2 cut(s)	97, 505
NlaIV	GGNNCC	4 cut(s)	180, 186, 192, 387
NspV	TTCGAA	1 cut(s)	722
PcsI	WCGNNNNNNNCGW	1 cut(s)	77
PkrI	GCNGC	5 cut(s)	139, 142, 145, 301, 367
PpuMI	RGGWCCY	1 cut(s)	385
Psp5II	RGGWCCY	1 cut(s)	385
Psp6I	CCWGG	2 cut(s)	303, 579
PspFI	CCCAGC	2 cut(s)	169, 368
PspGI	CCWGG	2 cut(s)	303, 579
PspN4I	GGNNCC	4 cut(s)	180, 186, 192, 387
PspPI	GGNCC	4 cut(s)	178, 184, 190, 385
PspPPI	RGGWCCY	1 cut(s)	385
PstI	CTGCAG	1 cut(s)	145
PstNI	CAGNNNCTG	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	498
SatI	GCNGC	5 cut(s)	138, 141, 144, 300, 366
Sau3AI	GATC	1 cut(s)	436
Sau96I	GGNCC	4 cut(s)	178, 184, 190, 385
ScrFI	CCNGG	5 cut(s)	176, 182, 188, 305, 581
SduI	GDGCHC	2 cut(s)	327, 592
SfaNI	GCATC	2 cut(s)	44, 247
SfcI	CTRYAG	2 cut(s)	141, 697
SfuI	TTCGAA	1 cut(s)	722
SinI	GGWCC	1 cut(s)	385
SmlI	CTYRAG	2 cut(s)	284, 593
SmoI	CTYRAG	2 cut(s)	284, 593
Sse9I	AATT	1 cut(s)	50
SsiI	CCGC	2 cut(s)	138, 158
SspMI	CTAG	1 cut(s)	680
StyD4I	CCNGG	5 cut(s)	174, 180, 186, 303, 579
StyI	CCWWGG	1 cut(s)	540
TaaI	ACNGT	3 cut(s)	15, 314, 701
TaqI	TCGA	4 cut(s)	38, 321, 625, 722
TasI	AATT	1 cut(s)	50
TauI	GCSGC	1 cut(s)	140
Tru1I	TTAA	1 cut(s)	498
Tru9I	TTAA	1 cut(s)	498
TscAI	CASTG	1 cut(s)	319
TseI	GCWGC	4 cut(s)	140, 143, 299, 365
TspDTI	ATGAA	1 cut(s)	617
TspRI	CASTG	1 cut(s)	319
VpaK11BI	GGWCC	1 cut(s)	385
XmiI	GTMKAC	2 cut(s)	165, 207
XspI	CTAG	1 cut(s)	680

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.