Rmu_sc0038999.1_g000001

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038999.1
OG0006115
Physical Location & Seq
Reverse (-)
2 .. 503
502 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038999.1_g000001.1.cds

Sequence Viewer

Length: 365 bp
atggcgactccaccgtcttctacagctccgccgtccgcctcctcccaattcacctactccaacgcctcatcctcctcctacttcccaatgccctttcacctccagcaaccccaataccccgcgccttacaccgccgccgccccaccagcccccgccgtcgtctaccccgctcccgctcccgctcccgtctactctctcccccagcagtatcaacaggctcagcagctatttcaaagggacgcgcagacgatcacgcctgaagctcttgagagtgtgaaggctgcccttgcaaatagtgagattgagcacaaagctgaagctaagaagaaggcgattcctcgtaaagctgccgggcaggcttggga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

121

Amino Acids

12.93

Weight (kDa)

8.93

Isoelectric Point (pI)

80.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 13
AccBSI CCGCTC 3 cut(s) 170, 176, 182
AccI GTMKAC 2 cut(s) 162, 189
AccII CGCG 2 cut(s) 122, 242
AcuI CTGAAG 2 cut(s) 279, 336
AgsI TTSAA 1 cut(s) 233
AluBI AGCT 6 cut(s) 26, 226, 263, 314, 320, 347
AluI AGCT 6 cut(s) 26, 226, 263, 314, 320, 347
Alw21I GWGCWC 1 cut(s) 309
ApeKI GCWGC 3 cut(s) 223, 281, 347
AspLEI GCGC 2 cut(s) 124, 244
AsuC2I CCSGG 1 cut(s) 352
AsuHPI GGTGA 2 cut(s) 43, 89
BbsI GAAGAC 1 cut(s) 9
Bbv12I GWGCWC 1 cut(s) 309
BbvI GCAGC 3 cut(s) 235, 268, 334
BceAI ACGGC 2 cut(s) 16, 140
BcnI CCSGG 1 cut(s) 352
BfmI CTRYAG 1 cut(s) 21
BglI GCCNNNNNGGC 1 cut(s) 356
BisI GCNGC 5 cut(s) 135, 138, 224, 282, 348
BlpI GCTNAGC 1 cut(s) 219
BlsI GCNGC 5 cut(s) 136, 139, 225, 283, 349
Bme1390I CCNGG 1 cut(s) 352
BmrFI CCNGG 1 cut(s) 352
BpiI GAAGAC 1 cut(s) 9
BpmI CTGGAG 1 cut(s) 86
Bpu1102I GCTNAGC 1 cut(s) 219
BpuEI CTTGAG 1 cut(s) 287
BpuMI CCSGG 1 cut(s) 352
BseGI GGATG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 233
BseRI GAGGAG 2 cut(s) 31, 64
BseXI GCAGC 3 cut(s) 235, 268, 334
BseYI CCCAGC 1 cut(s) 201
Bsh1236I CGCG 2 cut(s) 122, 242
BsiHKAI GWGCWC 1 cut(s) 309
BsiSI CCGG 1 cut(s) 351
BslFI GGGAC 1 cut(s) 251
BsmFI GGGAC 1 cut(s) 251
Bsp1286I GDGCHC 1 cut(s) 309
Bsp143I GATC 1 cut(s) 249
Bsp1720I GCTNAGC 1 cut(s) 219
BspCNI CTCAG 1 cut(s) 232
BspFNI CGCG 2 cut(s) 122, 242
BsrBI CCGCTC 3 cut(s) 170, 176, 182
BssMI GATC 1 cut(s) 249
Bst4CI ACNGT 1 cut(s) 15
BstC8I GCNNGC 1 cut(s) 357
BstDEI CTNAG 2 cut(s) 219, 321
BstF5I GGATG 1 cut(s) 68
BstFNI CGCG 2 cut(s) 122, 242
BstHHI GCGC 2 cut(s) 124, 244
BstKTI GATC 1 cut(s) 252
BstMBI GATC 1 cut(s) 249
BstMWI GCNNNNNNNGC 3 cut(s) 146, 287, 356
BstSCI CCNGG 1 cut(s) 350
BstSFI CTRYAG 1 cut(s) 21
BstUI CGCG 2 cut(s) 122, 242
BstV1I GCAGC 3 cut(s) 235, 268, 334
BstV2I GAAGAC 1 cut(s) 9
BtsCI GGATG 1 cut(s) 68
Cac8I GCNNGC 1 cut(s) 357
CfoI GCGC 2 cut(s) 124, 244
CseI GACGC 1 cut(s) 248
DdeI CTNAG 2 cut(s) 219, 321
DpnI GATC 1 cut(s) 251
DpnII GATC 1 cut(s) 249
DrdI GACNNNNNNGTC 1 cut(s) 13
DseDI GACNNNNNNGTC 1 cut(s) 13
EciI GGCGGA 2 cut(s) 18, 25
Eco57I CTGAAG 2 cut(s) 279, 336
FaqI GGGAC 1 cut(s) 251
FauI CCCGC 5 cut(s) 127, 160, 175, 181, 187
FblI GTMKAC 2 cut(s) 162, 189
Fnu4HI GCNGC 5 cut(s) 135, 138, 224, 282, 348
FokI GGATG 1 cut(s) 55
Fsp4HI GCNGC 5 cut(s) 135, 138, 224, 282, 348
GlaI GCGC 2 cut(s) 123, 243
GluI GCNGC 5 cut(s) 135, 138, 224, 282, 348
GsaI CCCAGC 1 cut(s) 205
GsuI CTGGAG 1 cut(s) 86
HapII CCGG 1 cut(s) 351
HgaI GACGC 1 cut(s) 248
HhaI GCGC 2 cut(s) 124, 244
Hin6I GCGC 2 cut(s) 122, 242
HinP1I GCGC 2 cut(s) 122, 242
HinfI GANTC 2 cut(s) 7, 334
HpaII CCGG 1 cut(s) 351
HphI GGTGA 2 cut(s) 43, 89
Hpy166II GTNNAC 2 cut(s) 163, 190
Hpy188III TCNNGA 1 cut(s) 266
Hpy8I GTNNAC 2 cut(s) 163, 190
Hpy99I CGWCG 1 cut(s) 161
HpyAV CCTTC 2 cut(s) 271, 322
HpyCH4III ACNGT 1 cut(s) 15
HpyCH4V TGCA 1 cut(s) 290
HpyF10VI GCNNNNNNNGC 3 cut(s) 146, 287, 356
HpyF3I CTNAG 2 cut(s) 219, 321
HspAI GCGC 2 cut(s) 122, 242
Kzo9I GATC 1 cut(s) 249
LmnI GCTCC 4 cut(s) 31, 175, 181, 187
LpnPI CCDG 6 cut(s) 116, 159, 200, 215, 270, 341
Lsp1109I GCAGC 3 cut(s) 235, 268, 334
MalI GATC 1 cut(s) 251
MbiI CCGCTC 3 cut(s) 170, 176, 182
MboI GATC 1 cut(s) 249
MboII GAAGA 2 cut(s) 9, 337
MhlI GDGCHC 1 cut(s) 309
MluCI AATT 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 7 cut(s) 49, 52, 76, 82, 85, 110, 348
MspI CCGG 1 cut(s) 351
MspR9I CCNGG 1 cut(s) 352
MvnI CGCG 2 cut(s) 122, 242
MwoI GCNNNNNNNGC 3 cut(s) 146, 287, 356
NciI CCSGG 1 cut(s) 352
NdeII GATC 1 cut(s) 249
PfeI GAWTC 1 cut(s) 334
PkrI GCNGC 5 cut(s) 136, 139, 225, 283, 349
PspFI CCCAGC 1 cut(s) 201
SatI GCNGC 5 cut(s) 135, 138, 224, 282, 348
Sau3AI GATC 1 cut(s) 249
ScrFI CCNGG 1 cut(s) 352
SduI GDGCHC 1 cut(s) 309
SetI ASST 8 cut(s) 28, 56, 102, 228, 265, 316, 322, 349
SfcI CTRYAG 1 cut(s) 21
SmlI CTYRAG 1 cut(s) 266
SmoI CTYRAG 1 cut(s) 266
Sse9I AATT 1 cut(s) 47
StyD4I CCNGG 1 cut(s) 350
TaaI ACNGT 1 cut(s) 15
TasI AATT 1 cut(s) 47
TauI GCSGC 2 cut(s) 137, 140
TfiI GAWTC 1 cut(s) 334
TseI GCWGC 3 cut(s) 223, 281, 347
XmiI GTMKAC 2 cut(s) 162, 189
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.