Rw3G001670

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0006115
Physical Location & Seq
Reverse (-)
1396536 .. 1400050
3515 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G001670.1

Sequence Viewer

Length: 732 bp
ATGGCGACTCCACCGTCTTCTACAGCTCCGCCGTCCGCCTCCTCCCAATTCACCTACTCCAACGCCTCATCCTCCTCCTCCTACTTCCCAATGCCTTTTCACCTCCAGCAACCTCAATACCCCGCGCCTTACACCGCCGCCGCCCCACCAGCCCCCGCCGTCGTCTACCCCGCTCCCGCTCCCGCTCCCGTCTACTCTCTCCCCCAGCAGTATCAACAGGCTCAGCAGCTATTTCAAAGGGACGCGCAGACGATCACGCCTGAAGCTCTTGAGAGTGTGAAGGCTGCTCTTGCAAATAGTGAGATTGAGCACAAAGCTGAAGCTAAGAAGAAGGCGATTCCTCGAAAAGCTGCCGGGCAGGCTTGGGAGGACCCAACCCTCGCAGAGTGGCCTGAAAATGATTATCGCCTATTTTGTGGTGATCTTGGTAATGAGGTGAACGATGATGTTCTTTCAAAAGCATTTTCTCGATTTCCTTCCTTTAACATGGCCAGAGTTGTCAGAGACAAGAGGACCGGCAAAACTAAGGGATTTGGATTTGTTAGCTTTGCTAACCCTTCAGACCTGGCTGGAGCACTCAAGGAAATGAATGGCAAGTATGTGGGGAATCGGCCTATTAAACTGCGCAAAAGTAACTGGAGGGAGCGGATAGATTATGATGCATTAGAGAAACAAAAGAACTTCTCGCATAAGAAGCCGAAGCTTTCAAAGAAGAGTATATTACACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

243

Amino Acids

26.93

Weight (kDa)

9.6

Isoelectric Point (pI)

50.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 137 - 207 1e-18 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 13
Acc16I TGCGCA 1 cut(s) 626
AccBSI CCGCTC 4 cut(s) 173, 179, 185, 646
AccI GTMKAC 2 cut(s) 165, 192
AccII CGCG 2 cut(s) 125, 245
AcoI YGGCCR 1 cut(s) 489
AcuI CTGAAG 3 cut(s) 282, 339, 543
AgsI TTSAA 3 cut(s) 236, 456, 708
AjnI CCWGG 1 cut(s) 564
AluBI AGCT 8 cut(s) 26, 229, 266, 317, 323, 350, 546, 703
AluI AGCT 8 cut(s) 26, 229, 266, 317, 323, 350, 546, 703
Alw21I GWGCWC 2 cut(s) 312, 577
Alw26I GTCTC 1 cut(s) 498
AoxI GGCC 3 cut(s) 389, 489, 611
ApeKI GCWGC 3 cut(s) 226, 284, 350
AspLEI GCGC 3 cut(s) 127, 247, 627
AspS9I GGNCC 2 cut(s) 370, 513
AsuC2I CCSGG 1 cut(s) 355
AsuHPI GGTGA 4 cut(s) 43, 92, 431, 448
AvaII GGWCC 2 cut(s) 370, 513
BalI TGGCCA 1 cut(s) 491
BbsI GAAGAC 1 cut(s) 9
Bbv12I GWGCWC 2 cut(s) 312, 577
BbvI GCAGC 3 cut(s) 238, 271, 337
BceAI ACGGC 2 cut(s) 16, 143
BciT130I CCWGG 1 cut(s) 566
BcnI CCSGG 1 cut(s) 355
BcoDI GTCTC 1 cut(s) 498
BfmI CTRYAG 1 cut(s) 21
BglI GCCNNNNNGGC 1 cut(s) 359
BisI GCNGC 5 cut(s) 138, 141, 227, 285, 351
BlpI GCTNAGC 1 cut(s) 222
BlsI GCNGC 5 cut(s) 139, 142, 228, 286, 352
Bme1390I CCNGG 2 cut(s) 355, 566
Bme18I GGWCC 2 cut(s) 370, 513
BmgT120I GGNCC 2 cut(s) 370, 513
BmiI GGNNCC 1 cut(s) 372
BmrFI CCNGG 2 cut(s) 355, 566
BmsI GCATC 1 cut(s) 649
BpiI GAAGAC 1 cut(s) 9
BpmI CTGGAG 3 cut(s) 89, 591, 658
Bpu1102I GCTNAGC 1 cut(s) 222
BpuEI CTTGAG 2 cut(s) 290, 563
BpuMI CCSGG 1 cut(s) 355
Bse118I RCCGGY 1 cut(s) 515
Bse1I ACTGG 1 cut(s) 641
BseBI CCWGG 1 cut(s) 566
BseGI GGATG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 236
BseNI ACTGG 1 cut(s) 641
BseRI GAGGAG 3 cut(s) 31, 64, 67
BseXI GCAGC 3 cut(s) 238, 271, 337
BseYI CCCAGC 1 cut(s) 204
Bsh1236I CGCG 2 cut(s) 125, 245
BshFI GGCC 3 cut(s) 391, 491, 613
BsiHKAI GWGCWC 2 cut(s) 312, 577
BsiSI CCGG 2 cut(s) 354, 516
BslFI GGGAC 1 cut(s) 254
BsmAI GTCTC 1 cut(s) 498
BsmFI GGGAC 1 cut(s) 254
BsnI GGCC 3 cut(s) 391, 491, 613
Bsp1286I GDGCHC 2 cut(s) 312, 577
Bsp143I GATC 2 cut(s) 252, 421
Bsp1720I GCTNAGC 1 cut(s) 222
BspANI GGCC 3 cut(s) 391, 491, 613
BspCNI CTCAG 1 cut(s) 235
BspFNI CGCG 2 cut(s) 125, 245
BspLI GGNNCC 1 cut(s) 372
BsrBI CCGCTC 4 cut(s) 173, 179, 185, 646
BsrFI RCCGGY 1 cut(s) 515
BsrI ACTGG 1 cut(s) 641
BssAI RCCGGY 1 cut(s) 515
BssMI GATC 2 cut(s) 252, 421
Bst2UI CCWGG 1 cut(s) 566
Bst4CI ACNGT 1 cut(s) 15
Bst6I CTCTTC 1 cut(s) 707
BstC8I GCNNGC 1 cut(s) 360
BstDEI CTNAG 3 cut(s) 222, 324, 525
BstF5I GGATG 1 cut(s) 68
BstFNI CGCG 2 cut(s) 125, 245
BstHHI GCGC 3 cut(s) 127, 247, 627
BstKTI GATC 2 cut(s) 255, 424
BstMAI GTCTC 1 cut(s) 498
BstMBI GATC 2 cut(s) 252, 421
BstMWI GCNNNNNNNGC 4 cut(s) 149, 290, 359, 694
BstNI CCWGG 1 cut(s) 566
BstSCI CCNGG 2 cut(s) 353, 564
BstSFI CTRYAG 1 cut(s) 21
BstUI CGCG 2 cut(s) 125, 245
BstV1I GCAGC 3 cut(s) 238, 271, 337
BstV2I GAAGAC 1 cut(s) 9
BsuRI GGCC 3 cut(s) 391, 491, 613
BtsCI GGATG 1 cut(s) 68
Cac8I GCNNGC 1 cut(s) 360
CfoI GCGC 3 cut(s) 127, 247, 627
Cfr10I RCCGGY 1 cut(s) 515
Cfr13I GGNCC 2 cut(s) 370, 513
CseI GACGC 1 cut(s) 251
CviAII CATG 1 cut(s) 487
DdeI CTNAG 3 cut(s) 222, 324, 525
DpnI GATC 2 cut(s) 254, 423
DpnII GATC 2 cut(s) 252, 421
DrdI GACNNNNNNGTC 1 cut(s) 13
DseDI GACNNNNNNGTC 1 cut(s) 13
EaeI YGGCCR 1 cut(s) 489
Eam1104I CTCTTC 1 cut(s) 707
EarI CTCTTC 1 cut(s) 707
EciI GGCGGA 2 cut(s) 18, 25
Eco47I GGWCC 2 cut(s) 370, 513
Eco57I CTGAAG 3 cut(s) 282, 339, 543
EcoO109I RGGNCCY 1 cut(s) 370
EcoRII CCWGG 1 cut(s) 564
EcoT22I ATGCAT 1 cut(s) 664
FaeI CATG 1 cut(s) 490
FaiI YATR 5 cut(s) 488, 600, 657, 690, 719
FaqI GGGAC 1 cut(s) 254
FatI CATG 1 cut(s) 486
FauI CCCGC 5 cut(s) 130, 163, 178, 184, 190
FblI GTMKAC 2 cut(s) 165, 192
Fnu4HI GCNGC 5 cut(s) 138, 141, 227, 285, 351
FokI GGATG 1 cut(s) 55
Fsp4HI GCNGC 5 cut(s) 138, 141, 227, 285, 351
FspI TGCGCA 1 cut(s) 626
GlaI GCGC 3 cut(s) 126, 246, 626
GluI GCNGC 5 cut(s) 138, 141, 227, 285, 351
GsaI CCCAGC 1 cut(s) 208
GsuI CTGGAG 3 cut(s) 89, 591, 658
HaeIII GGCC 3 cut(s) 391, 491, 613
HapII CCGG 2 cut(s) 354, 516
HgaI GACGC 1 cut(s) 251
HhaI GCGC 3 cut(s) 127, 247, 627
Hin1II CATG 1 cut(s) 490
Hin6I GCGC 3 cut(s) 125, 245, 625
HinP1I GCGC 3 cut(s) 125, 245, 625
HindIII AAGCTT 1 cut(s) 701
HinfI GANTC 3 cut(s) 7, 337, 607
HpaII CCGG 2 cut(s) 354, 516
HphI GGTGA 4 cut(s) 43, 92, 431, 448
Hpy166II GTNNAC 3 cut(s) 166, 193, 439
Hpy188I TCNGA 2 cut(s) 503, 562
Hpy188III TCNNGA 2 cut(s) 269, 468
Hpy8I GTNNAC 3 cut(s) 166, 193, 439
Hpy99I CGWCG 1 cut(s) 164
HpyAV CCTTC 4 cut(s) 274, 325, 486, 567
HpyCH4III ACNGT 1 cut(s) 15
HpyCH4V TGCA 2 cut(s) 293, 662
HpyF10VI GCNNNNNNNGC 4 cut(s) 149, 290, 359, 694
HpyF3I CTNAG 3 cut(s) 222, 324, 525
Hsp92II CATG 1 cut(s) 490
HspAI GCGC 3 cut(s) 125, 245, 625
Kzo9I GATC 2 cut(s) 252, 421
LmnI GCTCC 6 cut(s) 31, 178, 184, 190, 572, 643
Lsp1109I GCAGC 3 cut(s) 238, 271, 337
LweI GCATC 1 cut(s) 649
MaeIII GTNAC 1 cut(s) 632
MalI GATC 2 cut(s) 254, 423
MbiI CCGCTC 4 cut(s) 173, 179, 185, 646
MboI GATC 2 cut(s) 252, 421
MboII GAAGA 3 cut(s) 9, 340, 724
MhlI GDGCHC 2 cut(s) 312, 577
MlsI TGGCCA 1 cut(s) 491
MluCI AATT 1 cut(s) 47
MluNI TGGCCA 1 cut(s) 491
MmeI TCCRAC 1 cut(s) 84
Mox20I TGGCCA 1 cut(s) 491
Mph1103I ATGCAT 1 cut(s) 664
MscI TGGCCA 1 cut(s) 491
MseI TTAA 2 cut(s) 483, 618
Msp20I TGGCCA 1 cut(s) 491
MspI CCGG 2 cut(s) 354, 516
MspR9I CCNGG 2 cut(s) 355, 566
MvaI CCWGG 1 cut(s) 566
MvnI CGCG 2 cut(s) 125, 245
MwoI GCNNNNNNNGC 4 cut(s) 149, 290, 359, 694
NciI CCSGG 1 cut(s) 355
NdeII GATC 2 cut(s) 252, 421
NlaIII CATG 1 cut(s) 490
NlaIV GGNNCC 1 cut(s) 372
NsbI TGCGCA 1 cut(s) 626
NsiI ATGCAT 1 cut(s) 664
PfeI GAWTC 2 cut(s) 337, 607
PkrI GCNGC 5 cut(s) 139, 142, 228, 286, 352
PpuMI RGGWCCY 1 cut(s) 370
Psp5II RGGWCCY 1 cut(s) 370
Psp6I CCWGG 1 cut(s) 564
PspFI CCCAGC 1 cut(s) 204
PspGI CCWGG 1 cut(s) 564
PspN4I GGNNCC 1 cut(s) 372
PspPI GGNCC 2 cut(s) 370, 513
PspPPI RGGWCCY 1 cut(s) 370
SaqAI TTAA 2 cut(s) 483, 618
SatI GCNGC 5 cut(s) 138, 141, 227, 285, 351
Sau3AI GATC 2 cut(s) 252, 421
Sau96I GGNCC 2 cut(s) 370, 513
ScrFI CCNGG 2 cut(s) 355, 566
SduI GDGCHC 2 cut(s) 312, 577
SfaNI GCATC 1 cut(s) 649
SfcI CTRYAG 1 cut(s) 21
SinI GGWCC 2 cut(s) 370, 513
SmlI CTYRAG 2 cut(s) 269, 578
SmoI CTYRAG 2 cut(s) 269, 578
Sse9I AATT 1 cut(s) 47
StyD4I CCNGG 2 cut(s) 353, 564
TaaI ACNGT 1 cut(s) 15
TaqI TCGA 2 cut(s) 343, 469
TasI AATT 1 cut(s) 47
TauI GCSGC 2 cut(s) 140, 143
TfiI GAWTC 2 cut(s) 337, 607
Tru1I TTAA 2 cut(s) 483, 618
Tru9I TTAA 2 cut(s) 483, 618
TseI GCWGC 3 cut(s) 226, 284, 350
TspDTI ATGAA 1 cut(s) 602
VpaK11BI GGWCC 2 cut(s) 370, 513
XmiI GTMKAC 2 cut(s) 165, 192
Zsp2I ATGCAT 1 cut(s) 664
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.