Rroxscaffold_6G00427520

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0006115
Physical Location & Seq
Reverse (-)
48093791 .. 48097066
3276 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00427520.1

Sequence Viewer

Length: 657 bp
ATGGCGACTCCACCGTCTTCTACAGCTCCGCCGTCCGCCTCCTCCCAATTCACCTACTCCAACGCCTCATCCTCCTCCTCCTCCTCCTACTTCCCAATGCCCTTTCACCTCCAGCAACCCCAATACCCCGCGCCTTACACCGCCGCCGCCCCACCAGCCCCCGCCGTCGTCTACCCCGCGCCCGCTCCCGCTCCCGTCTACTCTCTCCCCCAGCAGTATCAACAGGCTCAGCAGTTATTTCAAAGAGATGCGCAGACGATCACGCCTGAAGCTCTCGAGAGTGTGAAGGCTGCCCTTGCAAATAGTGAGATTGAGCACAAAGCTGAAGCTAAGAAGAAGGCGATTCCTCGAAAAGCTGCCGGGCAGGCTTGGGAGGACCCAACCCTCGCAGAATGGCCTGAAAATGATTATCGCCTATTTTGTGGTGATCTTGGTAATGAGGTGAACGATGATGTTCTTTCAAAAGCATTTTCTCGATTTCCTTCCTTTAACATGGCCAGAGTTGTCAGAGACAAGAGGACCGGCAAAACTAAGGGATTTGGATTTGTTAGCTTTGCTAACCCTTCAGACCTGGCTGGAGCACTCAAGGAAATGAATGGCAAGTATGTGGGGAATCGGCCTATTAAACTGCGCAAAAGTAACTGGAGGAGAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

218

Amino Acids

23.83

Weight (kDa)

9.47

Isoelectric Point (pI)

55.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 139 - 209 8.2e-19 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 13
Acc16I TGCGCA 2 cut(s) 252, 632
AccBSI CCGCTC 2 cut(s) 185, 191
AccI GTMKAC 2 cut(s) 171, 198
AccII CGCG 2 cut(s) 131, 179
AcoI YGGCCR 1 cut(s) 495
AcuI CTGAAG 3 cut(s) 288, 345, 549
AgsI TTSAA 2 cut(s) 242, 462
AjnI CCWGG 1 cut(s) 570
AluBI AGCT 6 cut(s) 26, 272, 323, 329, 356, 552
AluI AGCT 6 cut(s) 26, 272, 323, 329, 356, 552
Alw21I GWGCWC 2 cut(s) 318, 583
Alw26I GTCTC 1 cut(s) 504
Ama87I CYCGRG 1 cut(s) 275
AoxI GGCC 3 cut(s) 395, 495, 617
ApeKI GCWGC 2 cut(s) 290, 356
AspLEI GCGC 4 cut(s) 133, 181, 253, 633
AspS9I GGNCC 2 cut(s) 376, 519
AsuC2I CCSGG 1 cut(s) 361
AsuHPI GGTGA 4 cut(s) 43, 98, 437, 454
AvaI CYCGRG 1 cut(s) 275
AvaII GGWCC 2 cut(s) 376, 519
BalI TGGCCA 1 cut(s) 497
BbsI GAAGAC 1 cut(s) 9
Bbv12I GWGCWC 2 cut(s) 318, 583
BbvI GCAGC 2 cut(s) 277, 343
BceAI ACGGC 2 cut(s) 16, 149
BciT130I CCWGG 1 cut(s) 572
BcnI CCSGG 1 cut(s) 361
BcoDI GTCTC 1 cut(s) 504
BfmI CTRYAG 1 cut(s) 21
BglI GCCNNNNNGGC 1 cut(s) 365
BisI GCNGC 4 cut(s) 144, 147, 291, 357
BlpI GCTNAGC 1 cut(s) 228
BlsI GCNGC 4 cut(s) 145, 148, 292, 358
Bme1390I CCNGG 2 cut(s) 361, 572
Bme18I GGWCC 2 cut(s) 376, 519
BmeT110I CYCGRG 1 cut(s) 275
BmgT120I GGNCC 2 cut(s) 376, 519
BmiI GGNNCC 1 cut(s) 378
BmrFI CCNGG 2 cut(s) 361, 572
BmsI GCATC 1 cut(s) 238
BpiI GAAGAC 1 cut(s) 9
BpmI CTGGAG 2 cut(s) 95, 597
Bpu1102I GCTNAGC 1 cut(s) 228
BpuEI CTTGAG 1 cut(s) 569
BpuMI CCSGG 1 cut(s) 361
Bse118I RCCGGY 1 cut(s) 521
Bse1I ACTGG 1 cut(s) 647
BseBI CCWGG 1 cut(s) 572
BseGI GGATG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 242
BseNI ACTGG 1 cut(s) 647
BseRI GAGGAG 5 cut(s) 31, 64, 67, 70, 73
BseXI GCAGC 2 cut(s) 277, 343
BseYI CCCAGC 1 cut(s) 210
Bsh1236I CGCG 2 cut(s) 131, 179
BshFI GGCC 3 cut(s) 397, 497, 619
BsiHKAI GWGCWC 2 cut(s) 318, 583
BsiHKCI CYCGRG 1 cut(s) 275
BsiSI CCGG 2 cut(s) 360, 522
BsmAI GTCTC 1 cut(s) 504
BsnI GGCC 3 cut(s) 397, 497, 619
BsoBI CYCGRG 1 cut(s) 275
Bsp1286I GDGCHC 2 cut(s) 318, 583
Bsp143I GATC 2 cut(s) 258, 427
Bsp1720I GCTNAGC 1 cut(s) 228
BspANI GGCC 3 cut(s) 397, 497, 619
BspCNI CTCAG 1 cut(s) 241
BspFNI CGCG 2 cut(s) 131, 179
BspLI GGNNCC 1 cut(s) 378
BsrBI CCGCTC 2 cut(s) 185, 191
BsrFI RCCGGY 1 cut(s) 521
BsrI ACTGG 1 cut(s) 647
BssAI RCCGGY 1 cut(s) 521
BssMI GATC 2 cut(s) 258, 427
Bst2UI CCWGG 1 cut(s) 572
Bst4CI ACNGT 1 cut(s) 15
BstC8I GCNNGC 2 cut(s) 183, 366
BstDEI CTNAG 3 cut(s) 228, 330, 531
BstF5I GGATG 1 cut(s) 68
BstFNI CGCG 2 cut(s) 131, 179
BstHHI GCGC 4 cut(s) 133, 181, 253, 633
BstKTI GATC 2 cut(s) 261, 430
BstMAI GTCTC 1 cut(s) 504
BstMBI GATC 2 cut(s) 258, 427
BstMWI GCNNNNNNNGC 3 cut(s) 155, 296, 365
BstNI CCWGG 1 cut(s) 572
BstSCI CCNGG 2 cut(s) 359, 570
BstSFI CTRYAG 1 cut(s) 21
BstUI CGCG 2 cut(s) 131, 179
BstV1I GCAGC 2 cut(s) 277, 343
BstV2I GAAGAC 1 cut(s) 9
BsuRI GGCC 3 cut(s) 397, 497, 619
BtsCI GGATG 1 cut(s) 68
Cac8I GCNNGC 2 cut(s) 183, 366
CfoI GCGC 4 cut(s) 133, 181, 253, 633
Cfr10I RCCGGY 1 cut(s) 521
Cfr13I GGNCC 2 cut(s) 376, 519
CviAII CATG 1 cut(s) 493
DdeI CTNAG 3 cut(s) 228, 330, 531
DpnI GATC 2 cut(s) 260, 429
DpnII GATC 2 cut(s) 258, 427
DrdI GACNNNNNNGTC 1 cut(s) 13
DseDI GACNNNNNNGTC 1 cut(s) 13
EaeI YGGCCR 1 cut(s) 495
EciI GGCGGA 2 cut(s) 18, 25
Eco47I GGWCC 2 cut(s) 376, 519
Eco57I CTGAAG 3 cut(s) 288, 345, 549
Eco88I CYCGRG 1 cut(s) 275
EcoO109I RGGNCCY 1 cut(s) 376
EcoRII CCWGG 1 cut(s) 570
FaeI CATG 1 cut(s) 496
FaiI YATR 2 cut(s) 494, 606
FatI CATG 1 cut(s) 492
FauI CCCGC 5 cut(s) 136, 169, 184, 190, 196
FblI GTMKAC 2 cut(s) 171, 198
Fnu4HI GCNGC 4 cut(s) 144, 147, 291, 357
FokI GGATG 1 cut(s) 55
Fsp4HI GCNGC 4 cut(s) 144, 147, 291, 357
FspI TGCGCA 2 cut(s) 252, 632
GlaI GCGC 4 cut(s) 132, 180, 252, 632
GluI GCNGC 4 cut(s) 144, 147, 291, 357
GsaI CCCAGC 1 cut(s) 214
GsuI CTGGAG 2 cut(s) 95, 597
HaeIII GGCC 3 cut(s) 397, 497, 619
HapII CCGG 2 cut(s) 360, 522
HhaI GCGC 4 cut(s) 133, 181, 253, 633
Hin1II CATG 1 cut(s) 496
Hin6I GCGC 4 cut(s) 131, 179, 251, 631
HinP1I GCGC 4 cut(s) 131, 179, 251, 631
HinfI GANTC 3 cut(s) 7, 343, 613
HpaII CCGG 2 cut(s) 360, 522
HphI GGTGA 4 cut(s) 43, 98, 437, 454
Hpy166II GTNNAC 3 cut(s) 172, 199, 445
Hpy188I TCNGA 2 cut(s) 509, 568
Hpy188III TCNNGA 3 cut(s) 275, 277, 474
Hpy8I GTNNAC 3 cut(s) 172, 199, 445
Hpy99I CGWCG 1 cut(s) 170
HpyAV CCTTC 4 cut(s) 280, 331, 492, 573
HpyCH4III ACNGT 1 cut(s) 15
HpyCH4V TGCA 1 cut(s) 299
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 296, 365
HpyF3I CTNAG 3 cut(s) 228, 330, 531
Hsp92II CATG 1 cut(s) 496
HspAI GCGC 4 cut(s) 131, 179, 251, 631
Kzo9I GATC 2 cut(s) 258, 427
LmnI GCTCC 4 cut(s) 31, 190, 196, 578
Lsp1109I GCAGC 2 cut(s) 277, 343
LweI GCATC 1 cut(s) 238
MaeIII GTNAC 1 cut(s) 638
MalI GATC 2 cut(s) 260, 429
MbiI CCGCTC 2 cut(s) 185, 191
MboI GATC 2 cut(s) 258, 427
MboII GAAGA 2 cut(s) 9, 346
MhlI GDGCHC 2 cut(s) 318, 583
MlsI TGGCCA 1 cut(s) 497
MluCI AATT 1 cut(s) 47
MluNI TGGCCA 1 cut(s) 497
MmeI TCCRAC 1 cut(s) 84
Mox20I TGGCCA 1 cut(s) 497
MscI TGGCCA 1 cut(s) 497
MseI TTAA 2 cut(s) 489, 624
Msp20I TGGCCA 1 cut(s) 497
MspI CCGG 2 cut(s) 360, 522
MspR9I CCNGG 2 cut(s) 361, 572
MvaI CCWGG 1 cut(s) 572
MvnI CGCG 2 cut(s) 131, 179
MwoI GCNNNNNNNGC 3 cut(s) 155, 296, 365
NciI CCSGG 1 cut(s) 361
NdeII GATC 2 cut(s) 258, 427
NlaIII CATG 1 cut(s) 496
NlaIV GGNNCC 1 cut(s) 378
NsbI TGCGCA 2 cut(s) 252, 632
PaeR7I CTCGAG 1 cut(s) 275
PfeI GAWTC 2 cut(s) 343, 613
PkrI GCNGC 4 cut(s) 145, 148, 292, 358
PpuMI RGGWCCY 1 cut(s) 376
Psp5II RGGWCCY 1 cut(s) 376
Psp6I CCWGG 1 cut(s) 570
PspFI CCCAGC 1 cut(s) 210
PspGI CCWGG 1 cut(s) 570
PspN4I GGNNCC 1 cut(s) 378
PspPI GGNCC 2 cut(s) 376, 519
PspPPI RGGWCCY 1 cut(s) 376
SaqAI TTAA 2 cut(s) 489, 624
SatI GCNGC 4 cut(s) 144, 147, 291, 357
Sau3AI GATC 2 cut(s) 258, 427
Sau96I GGNCC 2 cut(s) 376, 519
ScrFI CCNGG 2 cut(s) 361, 572
SduI GDGCHC 2 cut(s) 318, 583
SfaNI GCATC 1 cut(s) 238
SfcI CTRYAG 1 cut(s) 21
Sfr274I CTCGAG 1 cut(s) 275
SinI GGWCC 2 cut(s) 376, 519
SlaI CTCGAG 1 cut(s) 275
SmlI CTYRAG 2 cut(s) 275, 584
SmoI CTYRAG 2 cut(s) 275, 584
Sse9I AATT 1 cut(s) 47
StyD4I CCNGG 2 cut(s) 359, 570
TaaI ACNGT 1 cut(s) 15
TaqI TCGA 3 cut(s) 276, 349, 475
TasI AATT 1 cut(s) 47
TauI GCSGC 2 cut(s) 146, 149
TfiI GAWTC 2 cut(s) 343, 613
Tru1I TTAA 2 cut(s) 489, 624
Tru9I TTAA 2 cut(s) 489, 624
TseI GCWGC 2 cut(s) 290, 356
TspDTI ATGAA 1 cut(s) 608
VpaK11BI GGWCC 2 cut(s) 376, 519
XhoI CTCGAG 1 cut(s) 275
XmiI GTMKAC 2 cut(s) 171, 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.