Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0006115

Physical Location & Seq

Genomic Coordinates Reverse (-)

58209676 .. 58212431

Gene Structure 2756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG346200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGAACGACCACAACAGCAAATGGGTACCAGCAGAGGATTACCCTGAAGCGCTGGAGATTTTGAAAGCTGCCCTTGCAAACTGTGAAATGGTGCACAGAGCTGAAGCTAAGCAGAAATCAATACCCCGCTTCCAACCAGACCCAGAAACTCAGAAAGTATGTTCTTTTATTTGTTCAACTCTTAAGCTTCTCCGACTAGTTAATAAGGGTCTTCCTTGTAATGTAGCTGCACAGTATCACATTATATATCAGTACCTCATTATTCTGAGTTTTGCTTATGTTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

95

Amino Acids

10.86

Weight (kDa)

7.68

Isoelectric Point (pI)

35.77

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04500 AT3G04500 AT3G04500
fragaria_vesca	FvH4_5g31050 FvH4_6g01880 FvH4_6g01880
malus_domestica	MD04G1229900.v1.1 MD12G1247000.v1.1 MD12G1247100.v1.1 MD12G1247300.v1.1
prunus_persica	Prupe.6G350000_v2.0.a1
pyrus_communis	pycom04g20370 pycom04g20380 pycom12g22690
rosa_chinensis	RchiOBHm_Chr1g0368131 RchiOBHm_Chr3g0449621
rosa_laevigata	RLG00000025814
rosa_multiflora	Rmu_sc0024237.1_g000001 Rmu_sc0038999.1_g000001 Rmu_ssc0000031.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427520
rosa_rugosa	Rorug02G0622600
rosa_samantha	Rh1AG346200 Rh1BG308500 Rh1CG324200 Rh1DG340600
rosa_wichuraiana	Rw3G001670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	25
AccB1I	GGYRCC	1 cut(s)	25
AciI	CCGC	1 cut(s)	127
AcuI	CTGAAG	2 cut(s)	66, 123
AfaI	GTAC	2 cut(s)	27, 254
AfeI	AGCGCT	1 cut(s)	51
AflII	CTTAAG	1 cut(s)	182
AgsI	TTSAA	2 cut(s)	64, 177
AhlI	ACTAGT	1 cut(s)	196
AluBI	AGCT	5 cut(s)	68, 101, 107, 187, 227
AluI	AGCT	5 cut(s)	68, 101, 107, 187, 227
Alw21I	GWGCWC	1 cut(s)	96
Alw44I	GTGCAC	1 cut(s)	92
Aor51HI	AGCGCT	1 cut(s)	51
ApaLI	GTGCAC	1 cut(s)	92
ApeKI	GCWGC	2 cut(s)	68, 227
Asp718I	GGTACC	1 cut(s)	25
AspLEI	GCGC	1 cut(s)	52
BaeGI	GKGCMC	1 cut(s)	96
BanI	GGYRCC	1 cut(s)	25
BbsI	GAAGAC	1 cut(s)	203
Bbv12I	GWGCWC	1 cut(s)	96
BbvI	GCAGC	2 cut(s)	55, 214
BcuI	ACTAGT	1 cut(s)	196
BfaI	CTAG	1 cut(s)	197
BfoI	RGCGCY	1 cut(s)	53
BfrI	CTTAAG	1 cut(s)	182
BisI	GCNGC	2 cut(s)	69, 228
BlpI	GCTNAGC	1 cut(s)	108
BlsI	GCNGC	2 cut(s)	70, 229
BmiI	GGNNCC	1 cut(s)	27
BpiI	GAAGAC	1 cut(s)	203
BpmI	CTGGAG	1 cut(s)	74
Bpu1102I	GCTNAGC	1 cut(s)	108
BseMII	CTCAG	2 cut(s)	164, 257
BseSI	GKGCMC	1 cut(s)	96
BseXI	GCAGC	2 cut(s)	55, 214
BsgI	GTGCAG	1 cut(s)	213
BshNI	GGYRCC	1 cut(s)	25
BsiHKAI	GWGCWC	1 cut(s)	96
Bsp1286I	GDGCHC	1 cut(s)	96
Bsp1720I	GCTNAGC	1 cut(s)	108
BspACI	CCGC	1 cut(s)	127
BspCNI	CTCAG	2 cut(s)	163, 258
BspLI	GGNNCC	1 cut(s)	27
BspT107I	GGYRCC	1 cut(s)	25
BspTI	CTTAAG	1 cut(s)	182
Bst4CI	ACNGT	2 cut(s)	83, 234
BstAFI	CTTAAG	1 cut(s)	182
BstDEI	CTNAG	3 cut(s)	108, 150, 266
BstH2I	RGCGCY	1 cut(s)	53
BstHHI	GCGC	1 cut(s)	52
BstMWI	GCNNNNNNNGC	1 cut(s)	74
BstSLI	GKGCMC	1 cut(s)	96
BstV1I	GCAGC	2 cut(s)	55, 214
BstV2I	GAAGAC	1 cut(s)	203
CfoI	GCGC	1 cut(s)	52
Csp6I	GTAC	2 cut(s)	26, 253
CviJI	RGCY	5 cut(s)	68, 101, 107, 187, 227
CviKI_1	RGCY	5 cut(s)	68, 101, 107, 187, 227
CviQI	GTAC	2 cut(s)	26, 253
DdeI	CTNAG	3 cut(s)	108, 150, 266
Eco47III	AGCGCT	1 cut(s)	51
Eco57I	CTGAAG	2 cut(s)	66, 123
FaiI	YATR	4 cut(s)	160, 245, 247, 279
FalI	AAGNNNNNCTT	2 cut(s)	57, 89
FauI	CCCGC	1 cut(s)	134
Fnu4HI	GCNGC	2 cut(s)	69, 228
Fsp4HI	GCNGC	2 cut(s)	69, 228
FspBI	CTAG	1 cut(s)	197
GlaI	GCGC	1 cut(s)	51
GluI	GCNGC	2 cut(s)	69, 228
GsuI	CTGGAG	1 cut(s)	74
HaeII	RGCGCY	1 cut(s)	53
HhaI	GCGC	1 cut(s)	52
Hin6I	GCGC	1 cut(s)	50
HinP1I	GCGC	1 cut(s)	50
HindIII	AAGCTT	1 cut(s)	185
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188I	TCNGA	3 cut(s)	153, 194, 267
Hpy8I	GTNNAC	1 cut(s)	94
HpyCH4III	ACNGT	2 cut(s)	83, 234
HpyCH4V	TGCA	3 cut(s)	77, 94, 230
HpyF10VI	GCNNNNNNNGC	1 cut(s)	74
HpyF3I	CTNAG	3 cut(s)	108, 150, 266
HspAI	GCGC	1 cut(s)	50
KpnI	GGTACC	1 cut(s)	29
LpnPI	CCDG	5 cut(s)	38, 42, 57, 150, 156
Lsp1109I	GCAGC	2 cut(s)	55, 214
MaeI	CTAG	1 cut(s)	197
MboII	GAAGA	1 cut(s)	203
MhlI	GDGCHC	1 cut(s)	96
MmeI	TCCRAC	2 cut(s)	157, 217
MnlI	CCTC	2 cut(s)	28, 266
MseI	TTAA	2 cut(s)	183, 201
MspCI	CTTAAG	1 cut(s)	182
MwoI	GCNNNNNNNGC	1 cut(s)	74
NlaIV	GGNNCC	1 cut(s)	27
PkrI	GCNGC	2 cut(s)	70, 229
PspN4I	GGNNCC	1 cut(s)	27
RsaI	GTAC	2 cut(s)	27, 254
RsaNI	GTAC	2 cut(s)	26, 253
SaqAI	TTAA	2 cut(s)	183, 201
SatI	GCNGC	2 cut(s)	69, 228
SduI	GDGCHC	1 cut(s)	96
SetI	ASST	6 cut(s)	70, 103, 109, 189, 229, 258
SgeI	CNNG	9 cut(s)	41, 56, 65, 86, 138, 149, 155, 209, 228
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
SpeI	ACTAGT	1 cut(s)	196
SsiI	CCGC	1 cut(s)	127
SspMI	CTAG	1 cut(s)	197
TaaI	ACNGT	2 cut(s)	83, 234
Tru1I	TTAA	2 cut(s)	183, 201
Tru9I	TTAA	2 cut(s)	183, 201
TseI	GCWGC	2 cut(s)	68, 227
TspDTI	ATGAA	1 cut(s)	17
Vha464I	CTTAAG	1 cut(s)	182
VneI	GTGCAC	1 cut(s)	92
XspI	CTAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.