RLG00000025814

RNA-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0006115
Physical Location & Seq
Forward (+)
48454538 .. 48458017
3480 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025814

Sequence Viewer

Length: 741 bp
ATGGCGACTCCACCGTCTTCTACAGCTCCGCCGTCCGCCTCCTCCCAATTCACCTACTCCAACGCCTCATCCTCCTCCTCCTCCTCCTACTTCCCAATGCCCTTTCACCTCCAGCAACCCCAATACCCCGCGCCTTACACCGCCGCCGCGGCCCCACCAGCCCCCGCCGTCGTCTACCCCGCTCCGGCTCCCGCTCCCGTTTACTCTCTCCCCCAGCAGTATCAACAGGCTCAGCAGCTATTTCAAAGGGATGCGCAGACGATCACGCCTGAAGCTCTTGAGAGTGTGAAGGCTGCGCTTGCAAATAGTGAGATTGAGCACAAAGCTGAAGCTAAGAAGAAGGCGATTCCTCGTAAAGCTGCCGGGCAGGCTTGGGAGGACCCAACCCTCGCAGAGTGGCCGGAAAATGATTATCGCCTATTTTGTGGTGATCTTGGTAATGAGGTGAACGATGATGTTCTTTCAAAAGCATTTTCTCGATTTCCTTCCTTTAACATGGCCAGAGTTGTCAGAGACAAGAGGACTGGCAAAACTAAGGGATTTGGATTTGTTAGCTTTGCTAACCCTTCAGACCTGGCTGGAGCACTCAAGGAAATGAATGGCAAGTATGTGGGGAATCGGCCTATTAAACTGCGCAAAAGTAACTGGAGGGAGAGGATAGATTATGATGCATTAGAGAAACAAAAGAACTTCTCGCATAAGAAGCCAAAGCTTTCAAAGAAGAGTATATTACACAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

247

Amino Acids

27.18

Weight (kDa)

9.6

Isoelectric Point (pI)

51.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 140 - 210 1e-18 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 13
Acc16I TGCGCA 2 cut(s) 255, 635
AccBSI CCGCTC 2 cut(s) 182, 194
AccI GTMKAC 1 cut(s) 174
AccII CGCG 2 cut(s) 131, 149
AcoI YGGCCR 2 cut(s) 398, 498
AcuI CTGAAG 3 cut(s) 291, 348, 552
AfiI CCNNNNNNNGG 1 cut(s) 184
AgsI TTSAA 3 cut(s) 245, 465, 717
AjnI CCWGG 1 cut(s) 573
AluBI AGCT 8 cut(s) 26, 238, 275, 326, 332, 359, 555, 712
AluI AGCT 8 cut(s) 26, 238, 275, 326, 332, 359, 555, 712
Alw21I GWGCWC 2 cut(s) 321, 586
Alw26I GTCTC 1 cut(s) 507
AoxI GGCC 4 cut(s) 150, 398, 498, 620
ApeKI GCWGC 3 cut(s) 235, 293, 359
AspLEI GCGC 4 cut(s) 133, 256, 298, 636
AspS9I GGNCC 2 cut(s) 151, 379
AsuC2I CCSGG 1 cut(s) 364
AsuHPI GGTGA 4 cut(s) 43, 98, 440, 457
AvaII GGWCC 1 cut(s) 379
BalI TGGCCA 1 cut(s) 500
BbsI GAAGAC 1 cut(s) 9
Bbv12I GWGCWC 2 cut(s) 321, 586
BbvI GCAGC 3 cut(s) 247, 280, 346
BceAI ACGGC 2 cut(s) 16, 152
BciT130I CCWGG 1 cut(s) 575
BcnI CCSGG 1 cut(s) 364
BcoDI GTCTC 1 cut(s) 507
BfmI CTRYAG 1 cut(s) 21
BglI GCCNNNNNGGC 2 cut(s) 149, 368
BisI GCNGC 6 cut(s) 144, 147, 150, 236, 294, 360
BlpI GCTNAGC 1 cut(s) 231
BlsI GCNGC 6 cut(s) 145, 148, 151, 237, 295, 361
Bme1390I CCNGG 2 cut(s) 364, 575
Bme18I GGWCC 1 cut(s) 379
BmgT120I GGNCC 2 cut(s) 151, 379
BmiI GGNNCC 3 cut(s) 153, 189, 381
BmrFI CCNGG 2 cut(s) 364, 575
BmsI GCATC 2 cut(s) 241, 658
BpiI GAAGAC 1 cut(s) 9
BpmI CTGGAG 3 cut(s) 95, 600, 667
Bpu1102I GCTNAGC 1 cut(s) 231
BpuEI CTTGAG 2 cut(s) 299, 572
BpuMI CCSGG 1 cut(s) 364
BsaJI CCNNGG 1 cut(s) 147
Bsc4I CCNNNNNNNGG 1 cut(s) 184
Bse1I ACTGG 2 cut(s) 529, 650
BseBI CCWGG 1 cut(s) 575
BseDI CCNNGG 1 cut(s) 147
BseGI GGATG 2 cut(s) 68, 256
BseLI CCNNNNNNNGG 1 cut(s) 184
BseMII CTCAG 1 cut(s) 245
BseNI ACTGG 2 cut(s) 529, 650
BseRI GAGGAG 5 cut(s) 31, 64, 67, 70, 73
BseXI GCAGC 3 cut(s) 247, 280, 346
BseYI CCCAGC 1 cut(s) 213
Bsh1236I CGCG 2 cut(s) 131, 149
BshFI GGCC 4 cut(s) 152, 400, 500, 622
BsiHKAI GWGCWC 2 cut(s) 321, 586
BsiSI CCGG 3 cut(s) 185, 363, 401
BslI CCNNNNNNNGG 1 cut(s) 184
BsmAI GTCTC 1 cut(s) 507
BsnI GGCC 4 cut(s) 152, 400, 500, 622
Bsp1286I GDGCHC 2 cut(s) 321, 586
Bsp143I GATC 2 cut(s) 261, 430
Bsp1720I GCTNAGC 1 cut(s) 231
BspANI GGCC 4 cut(s) 152, 400, 500, 622
BspCNI CTCAG 1 cut(s) 244
BspFNI CGCG 2 cut(s) 131, 149
BspLI GGNNCC 3 cut(s) 153, 189, 381
BsrBI CCGCTC 2 cut(s) 182, 194
BsrI ACTGG 2 cut(s) 529, 650
BssECI CCNNGG 1 cut(s) 147
BssMI GATC 2 cut(s) 261, 430
Bst2UI CCWGG 1 cut(s) 575
Bst4CI ACNGT 1 cut(s) 15
Bst6I CTCTTC 1 cut(s) 716
BstC8I GCNNGC 2 cut(s) 300, 369
BstDEI CTNAG 3 cut(s) 231, 333, 534
BstDSI CCRYGG 1 cut(s) 147
BstF5I GGATG 2 cut(s) 68, 256
BstFNI CGCG 2 cut(s) 131, 149
BstHHI GCGC 4 cut(s) 133, 256, 298, 636
BstKTI GATC 2 cut(s) 264, 433
BstMAI GTCTC 1 cut(s) 507
BstMBI GATC 2 cut(s) 261, 430
BstMWI GCNNNNNNNGC 5 cut(s) 149, 158, 299, 368, 703
BstNI CCWGG 1 cut(s) 575
BstSCI CCNGG 2 cut(s) 362, 573
BstSFI CTRYAG 1 cut(s) 21
BstUI CGCG 2 cut(s) 131, 149
BstV1I GCAGC 3 cut(s) 247, 280, 346
BstV2I GAAGAC 1 cut(s) 9
BsuRI GGCC 4 cut(s) 152, 400, 500, 622
BtgI CCRYGG 1 cut(s) 147
BtsCI GGATG 2 cut(s) 68, 256
Cac8I GCNNGC 2 cut(s) 300, 369
CfoI GCGC 4 cut(s) 133, 256, 298, 636
Cfr13I GGNCC 2 cut(s) 151, 379
Cfr42I CCGCGG 1 cut(s) 150
CviAII CATG 1 cut(s) 496
DdeI CTNAG 3 cut(s) 231, 333, 534
DpnI GATC 2 cut(s) 263, 432
DpnII GATC 2 cut(s) 261, 430
DrdI GACNNNNNNGTC 1 cut(s) 13
DseDI GACNNNNNNGTC 1 cut(s) 13
EaeI YGGCCR 2 cut(s) 398, 498
Eam1104I CTCTTC 1 cut(s) 716
EarI CTCTTC 1 cut(s) 716
EciI GGCGGA 2 cut(s) 18, 25
Eco47I GGWCC 1 cut(s) 379
Eco57I CTGAAG 3 cut(s) 291, 348, 552
EcoO109I RGGNCCY 1 cut(s) 379
EcoRII CCWGG 1 cut(s) 573
EcoT22I ATGCAT 1 cut(s) 673
FaeI CATG 1 cut(s) 499
FaiI YATR 5 cut(s) 497, 609, 666, 699, 728
FatI CATG 1 cut(s) 495
FauI CCCGC 4 cut(s) 136, 172, 187, 199
FblI GTMKAC 1 cut(s) 174
Fnu4HI GCNGC 6 cut(s) 144, 147, 150, 236, 294, 360
FokI GGATG 2 cut(s) 55, 263
Fsp4HI GCNGC 6 cut(s) 144, 147, 150, 236, 294, 360
FspI TGCGCA 2 cut(s) 255, 635
GlaI GCGC 4 cut(s) 132, 255, 297, 635
GluI GCNGC 6 cut(s) 144, 147, 150, 236, 294, 360
GsaI CCCAGC 1 cut(s) 217
GsuI CTGGAG 3 cut(s) 95, 600, 667
HaeIII GGCC 4 cut(s) 152, 400, 500, 622
HapII CCGG 3 cut(s) 185, 363, 401
HhaI GCGC 4 cut(s) 133, 256, 298, 636
Hin1II CATG 1 cut(s) 499
Hin6I GCGC 4 cut(s) 131, 254, 296, 634
HinP1I GCGC 4 cut(s) 131, 254, 296, 634
HindIII AAGCTT 1 cut(s) 710
HinfI GANTC 3 cut(s) 7, 346, 616
HpaII CCGG 3 cut(s) 185, 363, 401
HphI GGTGA 4 cut(s) 43, 98, 440, 457
Hpy166II GTNNAC 3 cut(s) 175, 202, 448
Hpy188I TCNGA 2 cut(s) 512, 571
Hpy188III TCNNGA 2 cut(s) 278, 477
Hpy8I GTNNAC 3 cut(s) 175, 202, 448
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 4 cut(s) 283, 334, 495, 576
HpyCH4III ACNGT 1 cut(s) 15
HpyCH4V TGCA 2 cut(s) 302, 671
HpyF10VI GCNNNNNNNGC 5 cut(s) 149, 158, 299, 368, 703
HpyF3I CTNAG 3 cut(s) 231, 333, 534
Hsp92II CATG 1 cut(s) 499
HspAI GCGC 4 cut(s) 131, 254, 296, 634
KspI CCGCGG 1 cut(s) 150
Kzo9I GATC 2 cut(s) 261, 430
LmnI GCTCC 5 cut(s) 31, 187, 193, 199, 581
Lsp1109I GCAGC 3 cut(s) 247, 280, 346
LweI GCATC 2 cut(s) 241, 658
MaeIII GTNAC 1 cut(s) 641
MalI GATC 2 cut(s) 263, 432
MbiI CCGCTC 2 cut(s) 182, 194
MboI GATC 2 cut(s) 261, 430
MboII GAAGA 3 cut(s) 9, 349, 733
MhlI GDGCHC 2 cut(s) 321, 586
MlsI TGGCCA 1 cut(s) 500
MluCI AATT 1 cut(s) 47
MluNI TGGCCA 1 cut(s) 500
MmeI TCCRAC 1 cut(s) 84
Mox20I TGGCCA 1 cut(s) 500
Mph1103I ATGCAT 1 cut(s) 673
MscI TGGCCA 1 cut(s) 500
MseI TTAA 2 cut(s) 492, 627
Msp20I TGGCCA 1 cut(s) 500
MspA1I CMGCKG 1 cut(s) 149
MspI CCGG 3 cut(s) 185, 363, 401
MspR9I CCNGG 2 cut(s) 364, 575
MvaI CCWGG 1 cut(s) 575
MvnI CGCG 2 cut(s) 131, 149
MwoI GCNNNNNNNGC 5 cut(s) 149, 158, 299, 368, 703
NciI CCSGG 1 cut(s) 364
NdeII GATC 2 cut(s) 261, 430
NlaIII CATG 1 cut(s) 499
NlaIV GGNNCC 3 cut(s) 153, 189, 381
NsbI TGCGCA 2 cut(s) 255, 635
NsiI ATGCAT 1 cut(s) 673
PfeI GAWTC 2 cut(s) 346, 616
PkrI GCNGC 6 cut(s) 145, 148, 151, 237, 295, 361
PpuMI RGGWCCY 1 cut(s) 379
Psp5II RGGWCCY 1 cut(s) 379
Psp6I CCWGG 1 cut(s) 573
PspFI CCCAGC 1 cut(s) 213
PspGI CCWGG 1 cut(s) 573
PspN4I GGNNCC 3 cut(s) 153, 189, 381
PspPI GGNCC 2 cut(s) 151, 379
PspPPI RGGWCCY 1 cut(s) 379
SacII CCGCGG 1 cut(s) 150
SaqAI TTAA 2 cut(s) 492, 627
SatI GCNGC 6 cut(s) 144, 147, 150, 236, 294, 360
Sau3AI GATC 2 cut(s) 261, 430
Sau96I GGNCC 2 cut(s) 151, 379
ScrFI CCNGG 2 cut(s) 364, 575
SduI GDGCHC 2 cut(s) 321, 586
SfaNI GCATC 2 cut(s) 241, 658
SfcI CTRYAG 1 cut(s) 21
Sfr303I CCGCGG 1 cut(s) 150
SgrBI CCGCGG 1 cut(s) 150
SinI GGWCC 1 cut(s) 379
SmlI CTYRAG 2 cut(s) 278, 587
SmoI CTYRAG 2 cut(s) 278, 587
Sse9I AATT 1 cut(s) 47
StyD4I CCNGG 2 cut(s) 362, 573
TaaI ACNGT 1 cut(s) 15
TaqI TCGA 1 cut(s) 478
TasI AATT 1 cut(s) 47
TauI GCSGC 3 cut(s) 146, 149, 152
TfiI GAWTC 2 cut(s) 346, 616
Tru1I TTAA 2 cut(s) 492, 627
Tru9I TTAA 2 cut(s) 492, 627
TseI GCWGC 3 cut(s) 235, 293, 359
TspDTI ATGAA 1 cut(s) 611
VpaK11BI GGWCC 1 cut(s) 379
XmiI GTMKAC 1 cut(s) 174
Zsp2I ATGCAT 1 cut(s) 673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.