Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0006115

Physical Location & Seq

Genomic Coordinates Forward (+)

31731573 .. 31733597

Gene Structure 2025 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1247000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

ATGGCGAACCCACCGTCTTCCTCCGCAGCTCCTCCATTGACCTCTTCCCAATTCACATACGCGAATGCCTCGTCGTCATCGTCCTACTTCCCCATGCCCTTCCACCTCCAGCAACCCCAGTACCCCGCGCCTTACGCCGTTGCAGCGCCACCCGCTCCGTCCGTCTACCCGGCCCCGGCTCCGGTCGCCGGTGTCTACTCTCTTCCTCAGCAGTATCAGCAGGCTCAGCAGTTGTTTCAAAGGGATGCGCAGACGATTACACCTGAGGCTCTCGAGAGTGTGAAGGCTGCTCTTGCAAACAGCGAAATTGAGCACAAAGCAGAAGCTAAGAAGAAAGCTATCCCTCGTAAAGCTGCCGGGCAGGCTTGGGAGGACCCAACTCTTGCAGAATGGCCAGAAAATGATTATCGACTTTTTTGTGGCGATCTTGGTAATGAGGTGAATGATGATGTTCTTTCAAAAGCATTTTCACGATTTCCATCCTTTAACATGGCAAGAGCGACCTTGAATTATTGCTTGTTGGGTCGATATGAACGAATTTGGAGTCAGGTTAGTGAACCGATTGAGCTTCCAAGCTGGTTCAATATTTTGATATTATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

201

Amino Acids

22.08

Weight (kDa)

5.19

Isoelectric Point (pI)

68.71

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006115)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G04500 AT3G04500 AT3G04500
fragaria_vesca	FvH4_5g31050 FvH4_6g01880 FvH4_6g01880
malus_domestica	MD04G1229900.v1.1 MD12G1247000.v1.1 MD12G1247100.v1.1 MD12G1247300.v1.1
prunus_persica	Prupe.6G350000_v2.0.a1
pyrus_communis	pycom04g20370 pycom04g20380 pycom12g22690
rosa_chinensis	RchiOBHm_Chr1g0368131 RchiOBHm_Chr3g0449621
rosa_laevigata	RLG00000025814
rosa_multiflora	Rmu_sc0024237.1_g000001 Rmu_sc0038999.1_g000001 Rmu_ssc0000031.1_g000001
rosa_roxburghii	Rroxscaffold_6G00427520
rosa_rugosa	Rorug02G0622600
rosa_samantha	Rh1AG346200 Rh1BG308500 Rh1CG324200 Rh1DG340600
rosa_wichuraiana	Rw3G001670

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	249
AccBSI	CCGCTC	1 cut(s)	155
AccI	GTMKAC	2 cut(s)	165, 195
AccII	CGCG	2 cut(s)	62, 128
AciI	CCGC	3 cut(s)	24, 126, 153
AcoI	YGGCCR	1 cut(s)	392
AcsI	RAATTY	1 cut(s)	537
AfaI	GTAC	1 cut(s)	122
AfiI	CCNNNNNNNGG	3 cut(s)	175, 181, 188
AgsI	TTSAA	4 cut(s)	239, 459, 508, 583
AluBI	AGCT	6 cut(s)	29, 326, 338, 353, 568, 576
AluI	AGCT	6 cut(s)	29, 326, 338, 353, 568, 576
Alw21I	GWGCWC	1 cut(s)	315
Ama87I	CYCGRG	1 cut(s)	272
AoxI	GGCC	2 cut(s)	171, 392
ApeKI	GCWGC	4 cut(s)	26, 143, 287, 353
ApoI	RAATTY	1 cut(s)	537
ArsI	GACNNNNNNTTYG	5 cut(s)	31, 56, 88, 529, 561
AspLEI	GCGC	3 cut(s)	130, 148, 250
AspS9I	GGNCC	2 cut(s)	172, 373
AsuC2I	CCSGG	3 cut(s)	170, 176, 358
AsuHPI	GGTGA	1 cut(s)	451
AvaI	CYCGRG	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	373
AxyI	CCTNAGG	1 cut(s)	264
BaeI	ACNNNNGTAYC	2 cut(s)	104, 137
BalI	TGGCCA	1 cut(s)	394
BbsI	GAAGAC	1 cut(s)	9
Bbv12I	GWGCWC	1 cut(s)	315
BbvCI	CCTCAGC	1 cut(s)	207
BbvI	GCAGC	4 cut(s)	38, 155, 274, 340
BccI	CCATC	1 cut(s)	487
BceAI	ACGGC	1 cut(s)	122
BcnI	CCSGG	3 cut(s)	170, 176, 358
BfoI	RGCGCY	1 cut(s)	149
BglI	GCCNNNNNGGC	1 cut(s)	362
BisI	GCNGC	4 cut(s)	27, 144, 288, 354
BlpI	GCTNAGC	1 cut(s)	225
BlsI	GCNGC	4 cut(s)	28, 145, 289, 355
Bme1390I	CCNGG	3 cut(s)	170, 176, 358
Bme18I	GGWCC	1 cut(s)	373
BmeT110I	CYCGRG	1 cut(s)	272
BmgT120I	GGNCC	2 cut(s)	172, 373
BmiI	GGNNCC	3 cut(s)	174, 180, 375
BmrFI	CCNGG	3 cut(s)	170, 176, 358
BmrI	ACTGGG	1 cut(s)	112
BmsI	GCATC	1 cut(s)	235
BmuI	ACTGGG	1 cut(s)	112
BpiI	GAAGAC	1 cut(s)	9
BpmI	CTGGAG	1 cut(s)	92
Bpu10I	CCTNAGC	1 cut(s)	207
Bpu1102I	GCTNAGC	1 cut(s)	225
BpuMI	CCSGG	3 cut(s)	170, 176, 358
BsaBI	GATNNNNATC	1 cut(s)	478
BsaJI	CCNNGG	1 cut(s)	174
BsaWI	WCCGGW	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	3 cut(s)	175, 181, 188
Bse118I	RCCGGY	1 cut(s)	188
Bse1I	ACTGG	1 cut(s)	118
Bse21I	CCTNAGG	1 cut(s)	264
Bse8I	GATNNNNATC	1 cut(s)	478
BseDI	CCNNGG	1 cut(s)	174
BseGI	GGATG	2 cut(s)	250, 479
BseJI	GATNNNNATC	1 cut(s)	478
BseLI	CCNNNNNNNGG	3 cut(s)	175, 181, 188
BseMII	CTCAG	3 cut(s)	221, 239, 255
BseNI	ACTGG	1 cut(s)	118
BseRI	GAGGAG	1 cut(s)	21
BseXI	GCAGC	4 cut(s)	38, 155, 274, 340
Bsh1236I	CGCG	2 cut(s)	62, 128
Bsh1285I	CGRYCG	1 cut(s)	186
BshFI	GGCC	2 cut(s)	173, 394
BsiEI	CGRYCG	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	315
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	5 cut(s)	170, 176, 182, 189, 357
BslI	CCNNNNNNNGG	3 cut(s)	175, 181, 188
BsmI	GAATGC	1 cut(s)	70
BsnI	GGCC	2 cut(s)	173, 394
BsoBI	CYCGRG	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	315
Bsp143I	GATC	1 cut(s)	424
Bsp1720I	GCTNAGC	1 cut(s)	225
BspACI	CCGC	3 cut(s)	24, 126, 153
BspANI	GGCC	2 cut(s)	173, 394
BspCNI	CTCAG	3 cut(s)	220, 238, 256
BspFNI	CGCG	2 cut(s)	62, 128
BspLI	GGNNCC	3 cut(s)	174, 180, 375
BsrBI	CCGCTC	1 cut(s)	155
BsrFI	RCCGGY	1 cut(s)	188
BsrI	ACTGG	1 cut(s)	118
BssAI	RCCGGY	1 cut(s)	188
BssECI	CCNNGG	1 cut(s)	174
BssMI	GATC	1 cut(s)	424
Bst4CI	ACNGT	1 cut(s)	15
Bst6I	CTCTTC	2 cut(s)	49, 207
BstC8I	GCNNGC	2 cut(s)	222, 363
BstDEI	CTNAG	4 cut(s)	207, 225, 264, 327
BstF5I	GGATG	2 cut(s)	250, 479
BstFNI	CGCG	2 cut(s)	62, 128
BstH2I	RGCGCY	1 cut(s)	149
BstHHI	GCGC	3 cut(s)	130, 148, 250
BstKTI	GATC	1 cut(s)	427
BstMBI	GATC	1 cut(s)	424
BstMCI	CGRYCG	1 cut(s)	186
BstMWI	GCNNNNNNNGC	8 cut(s)	134, 143, 152, 185, 217, 226, 293, 362
BstSCI	CCNGG	3 cut(s)	168, 174, 356
BstUI	CGCG	2 cut(s)	62, 128
BstV1I	GCAGC	4 cut(s)	38, 155, 274, 340
BstV2I	GAAGAC	1 cut(s)	9
Bsu36I	CCTNAGG	1 cut(s)	264
BsuRI	GGCC	2 cut(s)	173, 394
BtsCI	GGATG	2 cut(s)	250, 479
Cac8I	GCNNGC	2 cut(s)	222, 363
CfoI	GCGC	3 cut(s)	130, 148, 250
Cfr10I	RCCGGY	1 cut(s)	188
Cfr13I	GGNCC	2 cut(s)	172, 373
Csp6I	GTAC	1 cut(s)	121
CviAII	CATG	2 cut(s)	94, 490
CviQI	GTAC	1 cut(s)	121
DdeI	CTNAG	4 cut(s)	207, 225, 264, 327
DpnI	GATC	1 cut(s)	426
DpnII	GATC	1 cut(s)	424
EaeI	YGGCCR	1 cut(s)	392
Eam1104I	CTCTTC	2 cut(s)	49, 207
EarI	CTCTTC	2 cut(s)	49, 207
Eco47I	GGWCC	1 cut(s)	373
Eco81I	CCTNAGG	1 cut(s)	264
Eco88I	CYCGRG	1 cut(s)	272
EcoO109I	RGGNCCY	1 cut(s)	373
FaeI	CATG	2 cut(s)	97, 493
FaiI	YATR	5 cut(s)	58, 95, 491, 531, 601
FatI	CATG	2 cut(s)	93, 489
FauI	CCCGC	2 cut(s)	133, 160
FblI	GTMKAC	2 cut(s)	165, 195
Fnu4HI	GCNGC	4 cut(s)	27, 144, 288, 354
FokI	GGATG	2 cut(s)	257, 466
Fsp4HI	GCNGC	4 cut(s)	27, 144, 288, 354
FspI	TGCGCA	1 cut(s)	249
GlaI	GCGC	3 cut(s)	129, 147, 249
GluI	GCNGC	4 cut(s)	27, 144, 288, 354
GsuI	CTGGAG	1 cut(s)	92
HaeII	RGCGCY	1 cut(s)	149
HaeIII	GGCC	2 cut(s)	173, 394
HapII	CCGG	5 cut(s)	170, 176, 182, 189, 357
HhaI	GCGC	3 cut(s)	130, 148, 250
Hin1II	CATG	2 cut(s)	97, 493
Hin6I	GCGC	3 cut(s)	128, 146, 248
HinP1I	GCGC	3 cut(s)	128, 146, 248
HinfI	GANTC	1 cut(s)	544
HpaII	CCGG	5 cut(s)	170, 176, 182, 189, 357
HphI	GGTGA	1 cut(s)	451
Hpy166II	GTNNAC	3 cut(s)	166, 196, 557
Hpy188III	TCNNGA	3 cut(s)	272, 274, 471
Hpy8I	GTNNAC	3 cut(s)	166, 196, 557
Hpy99I	CGWCG	1 cut(s)	76
HpyAV	CCTTC	2 cut(s)	109, 277
HpyCH4III	ACNGT	1 cut(s)	15
HpyCH4V	TGCA	3 cut(s)	143, 296, 386
HpyF10VI	GCNNNNNNNGC	8 cut(s)	134, 143, 152, 185, 217, 226, 293, 362
HpyF3I	CTNAG	4 cut(s)	207, 225, 264, 327
Hsp92II	CATG	2 cut(s)	97, 493
HspAI	GCGC	3 cut(s)	128, 146, 248
Kzo9I	GATC	1 cut(s)	424
LmnI	GCTCC	3 cut(s)	34, 160, 184
Lsp1109I	GCAGC	4 cut(s)	38, 155, 274, 340
LweI	GCATC	1 cut(s)	235
MalI	GATC	1 cut(s)	426
MbiI	CCGCTC	1 cut(s)	155
MboI	GATC	1 cut(s)	424
MboII	GAAGA	4 cut(s)	9, 36, 194, 343
MhlI	GDGCHC	1 cut(s)	315
MlsI	TGGCCA	1 cut(s)	394
MluCI	AATT	4 cut(s)	50, 306, 508, 537
MluNI	TGGCCA	1 cut(s)	394
MlyI	GAGTC	1 cut(s)	553
Mox20I	TGGCCA	1 cut(s)	394
MscI	TGGCCA	1 cut(s)	394
MseI	TTAA	1 cut(s)	486
Msp20I	TGGCCA	1 cut(s)	394
MspI	CCGG	5 cut(s)	170, 176, 182, 189, 357
MspR9I	CCNGG	3 cut(s)	170, 176, 358
Mva1269I	GAATGC	1 cut(s)	70
MvnI	CGCG	2 cut(s)	62, 128
MwoI	GCNNNNNNNGC	8 cut(s)	134, 143, 152, 185, 217, 226, 293, 362
NciI	CCSGG	3 cut(s)	170, 176, 358
NdeII	GATC	1 cut(s)	424
NlaIII	CATG	2 cut(s)	97, 493
NlaIV	GGNNCC	3 cut(s)	174, 180, 375
NsbI	TGCGCA	1 cut(s)	249
PaeR7I	CTCGAG	1 cut(s)	272
PcsI	WCGNNNNNNNCGW	2 cut(s)	77, 532
PctI	GAATGC	1 cut(s)	70
PkrI	GCNGC	4 cut(s)	28, 145, 289, 355
PleI	GAGTC	1 cut(s)	552
PpsI	GAGTC	1 cut(s)	552
PpuMI	RGGWCCY	1 cut(s)	373
Psp5II	RGGWCCY	1 cut(s)	373
PspN4I	GGNNCC	3 cut(s)	174, 180, 375
PspPI	GGNCC	2 cut(s)	172, 373
PspPPI	RGGWCCY	1 cut(s)	373
RsaI	GTAC	1 cut(s)	122
RsaNI	GTAC	1 cut(s)	121
SaqAI	TTAA	1 cut(s)	486
SatI	GCNGC	4 cut(s)	27, 144, 288, 354
Sau3AI	GATC	1 cut(s)	424
Sau96I	GGNCC	2 cut(s)	172, 373
SchI	GAGTC	1 cut(s)	553
ScrFI	CCNGG	3 cut(s)	170, 176, 358
SduI	GDGCHC	1 cut(s)	315
SfaNI	GCATC	1 cut(s)	235
Sfr274I	CTCGAG	1 cut(s)	272
SgrAI	CRCCGGYG	1 cut(s)	188
SinI	GGWCC	1 cut(s)	373
SlaI	CTCGAG	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	272
SmoI	CTYRAG	1 cut(s)	272
Sse9I	AATT	4 cut(s)	50, 306, 508, 537
SsiI	CCGC	3 cut(s)	24, 126, 153
SspI	AATATT	1 cut(s)	586
StyD4I	CCNGG	3 cut(s)	168, 174, 356
TaaI	ACNGT	1 cut(s)	15
TaqI	TCGA	3 cut(s)	273, 409, 526
TasI	AATT	4 cut(s)	50, 306, 508, 537
Tru1I	TTAA	1 cut(s)	486
Tru9I	TTAA	1 cut(s)	486
TseI	GCWGC	4 cut(s)	26, 143, 287, 353
TspDTI	ATGAA	1 cut(s)	546
TspGWI	ACGGA	2 cut(s)	147, 151
VpaK11BI	GGWCC	1 cut(s)	373
XapI	RAATTY	1 cut(s)	537
XhoI	CTCGAG	1 cut(s)	272
XmiI	GTMKAC	2 cut(s)	165, 195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.