Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0006412

Physical Location & Seq

Genomic Coordinates Reverse (-)

1765393 .. 1767253

Gene Structure 1861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g03170.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 624 bp

ATGGCTTTCTCAAAATCCATGGCCCTTTTAGCTACGGTTCTTGTACTGCTCCCCATGGCTACTTTTGCAGTGGACTTGCCAGCTATATCTCCTACTGCTGCCCAGGAAATATGTAAACGAGTGGAGTGTGGAAGAGGAACATGCAATTACAACTCCAGTGAGCCATTACTCTACACATGTGAGTGCGAAACTGGATGGAAGCGAACCGCAGAAGGAAATGATACTCTTAAGTTTCTTCCTTGTGTCATCCCTGAATGTAACCTGGACTACAATTGCCAAACACCACCTAAAGTTCCTAATTACACACAACTGCCAAGCAACTTATCTGCATTTGACCCTTGCTCCTGGGTTTACTGTGGAGAAGGTACATGCGTAAAGAACTCTACCTATATATACACACCGGAGTGTGAATGTAATGAAGGGGCAGACAATCTTCTAGACATCTCAGTATTCCCATGCTACAGTGAATGCACACTTCAACCCGACTGTGAACGCCTTGGAATTGAAGTTGCCAATTCAACCACCTCTACTGACGGAAATGACAGTAACAAAGCTACCGACTTCATGCCAGGCAAATTCCAGTTGATGACTATAGTGATTGTGTCTGTGGGTATGATGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

208

Amino Acids

22.61

Weight (kDa)

4.3

Isoelectric Point (pI)

43.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006412)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g03170 FvH4_6g03180
malus_domestica	MD04G1222300.v1.1 MD04G1222400.v1.1 MD12G1238500.v1.1
prunus_persica	Prupe.6G341400_v2.0.a1
pyrus_communis	pycom04g19670 pycom12g21920
rosa_chinensis	RchiOBHm_Chr3g0451431 RchiOBHm_Chr3g0451451
rosa_laevigata	RLG00000025659 RLG00000025660
rosa_multiflora	Rmu_sc0002575.1_g000001 Rmu_sc0009360.1_g000055 Rmu_sc0021369.1_g000004 Rmu_ssc0000091.1_g000020
rosa_roxburghii	Rroxscaffold_164G00436480 Rroxscaffold_6G00428850
rosa_rugosa	Rorug02G0633900
rosa_samantha	Rh3AG036800 Rh3AG036900 Rh3BG037400 Rh3CG036000 Rh3DG036900 Rh3DG037000
rosa_wichuraiana	Rw3G002720 Rw3G002730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	575
AfaI	GTAC	2 cut(s)	45, 367
AflII	CTTAAG	1 cut(s)	227
AflIII	ACRYGT	1 cut(s)	176
AgsI	TTSAA	3 cut(s)	479, 506, 519
AjnI	CCWGG	4 cut(s)	102, 261, 344, 568
AleI	CACNNNNGTG	1 cut(s)	403
AluBI	AGCT	3 cut(s)	32, 83, 554
AluI	AGCT	3 cut(s)	32, 83, 554
AoxI	GGCC	1 cut(s)	21
ApeKI	GCWGC	1 cut(s)	98
ApoI	RAATTY	1 cut(s)	575
AspS9I	GGNCC	1 cut(s)	22
BaeI	ACNNNNGTAYC	2 cut(s)	357, 390
BbvI	GCAGC	1 cut(s)	85
BccI	CCATC	1 cut(s)	189
BciT130I	CCWGG	4 cut(s)	104, 263, 346, 570
BfaI	CTAG	1 cut(s)	437
BfmI	CTRYAG	2 cut(s)	460, 591
BfrI	CTTAAG	1 cut(s)	227
BisI	GCNGC	1 cut(s)	99
BlsI	GCNGC	1 cut(s)	100
Bme1390I	CCNGG	4 cut(s)	104, 263, 346, 570
BmgT120I	GGNCC	1 cut(s)	22
BmrFI	CCNGG	4 cut(s)	104, 263, 346, 570
BmsI	GCATC	1 cut(s)	606
BpmI	CTGGAG	1 cut(s)	139
BsaJI	CCNNGG	5 cut(s)	18, 54, 102, 345, 496
BsaWI	WCCGGW	1 cut(s)	400
BsaXI	ACNNNNNCTCC	2 cut(s)	326, 356
Bse1I	ACTGG	3 cut(s)	156, 196, 580
BseBI	CCWGG	4 cut(s)	104, 263, 346, 570
BseDI	CCNNGG	5 cut(s)	18, 54, 102, 345, 496
BseGI	GGATG	2 cut(s)	200, 246
BseMII	CTCAG	1 cut(s)	459
BseNI	ACTGG	3 cut(s)	156, 196, 580
BseXI	GCAGC	1 cut(s)	85
BshFI	GGCC	1 cut(s)	23
BsiSI	CCGG	1 cut(s)	401
BsmI	GAATGC	1 cut(s)	473
BsnI	GGCC	1 cut(s)	23
Bsp19I	CCATGG	2 cut(s)	18, 54
BspACI	CCGC	1 cut(s)	207
BspANI	GGCC	1 cut(s)	23
BspCNI	CTCAG	1 cut(s)	458
BspTI	CTTAAG	1 cut(s)	227
BsrI	ACTGG	3 cut(s)	156, 196, 580
BssECI	CCNNGG	5 cut(s)	18, 54, 102, 345, 496
BssT1I	CCWWGG	3 cut(s)	18, 54, 496
Bst2UI	CCWGG	4 cut(s)	104, 263, 346, 570
Bst4CI	ACNGT	5 cut(s)	37, 356, 464, 488, 545
Bst6I	CTCTTC	1 cut(s)	127
BstAFI	CTTAAG	1 cut(s)	227
BstC8I	GCNNGC	1 cut(s)	81
BstDEI	CTNAG	1 cut(s)	445
BstDSI	CCRYGG	2 cut(s)	18, 54
BstF5I	GGATG	2 cut(s)	200, 246
BstMWI	GCNNNNNNNGC	2 cut(s)	29, 65
BstNI	CCWGG	4 cut(s)	104, 263, 346, 570
BstNSI	RCATGY	3 cut(s)	144, 180, 372
BstSCI	CCNGG	4 cut(s)	102, 261, 344, 568
BstSFI	CTRYAG	2 cut(s)	460, 591
BstV1I	GCAGC	1 cut(s)	85
BsuRI	GGCC	1 cut(s)	23
BtgI	CCRYGG	2 cut(s)	18, 54
BtsCI	GGATG	2 cut(s)	200, 246
BtsI	GCAGTG	1 cut(s)	75
BtsIMutI	CAGTG	3 cut(s)	75, 163, 469
Cac8I	GCNNGC	1 cut(s)	81
Cfr13I	GGNCC	1 cut(s)	22
Csp6I	GTAC	2 cut(s)	44, 366
CviAII	CATG	7 cut(s)	19, 55, 141, 177, 369, 456, 565
CviJI	RGCY	7 cut(s)	5, 23, 32, 59, 83, 163, 554
CviKI_1	RGCY	7 cut(s)	5, 23, 32, 59, 83, 163, 554
CviQI	GTAC	2 cut(s)	44, 366
DdeI	CTNAG	1 cut(s)	445
Eam1104I	CTCTTC	1 cut(s)	127
EarI	CTCTTC	1 cut(s)	127
Eco130I	CCWWGG	3 cut(s)	18, 54, 496
EcoRII	CCWGG	4 cut(s)	102, 261, 344, 568
EcoT14I	CCWWGG	3 cut(s)	18, 54, 496
ErhI	CCWWGG	3 cut(s)	18, 54, 496
FaeI	CATG	7 cut(s)	22, 58, 144, 180, 372, 459, 568
FatI	CATG	7 cut(s)	18, 54, 140, 176, 368, 455, 564
Fnu4HI	GCNGC	1 cut(s)	99
FokI	GGATG	2 cut(s)	207, 233
Fsp4HI	GCNGC	1 cut(s)	99
FspBI	CTAG	1 cut(s)	437
GluI	GCNGC	1 cut(s)	99
GsuI	CTGGAG	1 cut(s)	139
HaeIII	GGCC	1 cut(s)	23
HapII	CCGG	1 cut(s)	401
Hin1II	CATG	7 cut(s)	22, 58, 144, 180, 372, 459, 568
HpaII	CCGG	1 cut(s)	401
Hpy166II	GTNNAC	4 cut(s)	73, 116, 352, 491
Hpy188III	TCNNGA	1 cut(s)	437
Hpy8I	GTNNAC	4 cut(s)	73, 116, 352, 491
HpyAV	CCTTC	3 cut(s)	206, 356, 413
HpyCH4III	ACNGT	5 cut(s)	37, 356, 464, 488, 545
HpyCH4V	TGCA	4 cut(s)	68, 144, 329, 471
HpyF10VI	GCNNNNNNNGC	2 cut(s)	29, 65
HpyF3I	CTNAG	1 cut(s)	445
Hsp92II	CATG	7 cut(s)	22, 58, 144, 180, 372, 459, 568
LmnI	GCTCC	2 cut(s)	54, 347
Lsp1109I	GCAGC	1 cut(s)	85
LweI	GCATC	1 cut(s)	606
MaeI	CTAG	1 cut(s)	437
MaeIII	GTNAC	2 cut(s)	257, 545
MboII	GAAGA	3 cut(s)	144, 227, 425
MfeI	CAATTG	1 cut(s)	271
MluCI	AATT	6 cut(s)	145, 271, 298, 501, 514, 575
MnlI	CCTC	2 cut(s)	128, 535
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	2 cut(s)	181, 403
MspCI	CTTAAG	1 cut(s)	227
MspI	CCGG	1 cut(s)	401
MspR9I	CCNGG	4 cut(s)	104, 263, 346, 570
MunI	CAATTG	1 cut(s)	271
Mva1269I	GAATGC	1 cut(s)	473
MvaI	CCWGG	4 cut(s)	104, 263, 346, 570
MwoI	GCNNNNNNNGC	2 cut(s)	29, 65
NcoI	CCATGG	2 cut(s)	18, 54
NlaIII	CATG	7 cut(s)	22, 58, 144, 180, 372, 459, 568
NspI	RCATGY	3 cut(s)	144, 180, 372
OliI	CACNNNNGTG	1 cut(s)	403
PciI	ACATGT	1 cut(s)	176
PctI	GAATGC	1 cut(s)	473
PkrI	GCNGC	1 cut(s)	100
PscI	ACATGT	1 cut(s)	176
Psp6I	CCWGG	4 cut(s)	102, 261, 344, 568
PspGI	CCWGG	4 cut(s)	102, 261, 344, 568
PspPI	GGNCC	1 cut(s)	22
RsaI	GTAC	2 cut(s)	45, 367
RsaNI	GTAC	2 cut(s)	44, 366
RseI	CAYNNNNRTG	2 cut(s)	181, 403
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	1 cut(s)	99
Sau96I	GGNCC	1 cut(s)	22
ScrFI	CCNGG	4 cut(s)	104, 263, 346, 570
SetI	ASST	8 cut(s)	34, 85, 264, 289, 367, 389, 527, 556
SfaNI	GCATC	1 cut(s)	606
SfcI	CTRYAG	2 cut(s)	460, 591
SmiMI	CAYNNNNRTG	2 cut(s)	181, 403
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	6 cut(s)	145, 271, 298, 501, 514, 575
SsiI	CCGC	1 cut(s)	207
SspMI	CTAG	1 cut(s)	437
StyD4I	CCNGG	4 cut(s)	102, 261, 344, 568
StyI	CCWWGG	3 cut(s)	18, 54, 496
TaaI	ACNGT	5 cut(s)	37, 356, 464, 488, 545
TasI	AATT	6 cut(s)	145, 271, 298, 501, 514, 575
TatI	WGTACW	1 cut(s)	43
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	3 cut(s)	75, 163, 469
TseI	GCWGC	1 cut(s)	98
TspDTI	ATGAA	2 cut(s)	432, 553
TspGWI	ACGGA	1 cut(s)	549
TspRI	CASTG	3 cut(s)	75, 163, 469
Vha464I	CTTAAG	1 cut(s)	227
XapI	RAATTY	1 cut(s)	575
XbaI	TCTAGA	1 cut(s)	436
XceI	RCATGY	3 cut(s)	144, 180, 372
XspI	CTAG	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.