Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0006412

Physical Location & Seq

Genomic Coordinates Forward (+)

21332496 .. 21334048

Gene Structure 1553 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g19670.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 717 bp

ATGCTCATAAGCAAACAACATCCCCTTCACCTTCACATAAACCTCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAAAAAACTGATACAAATGGCTTTCTCTAACTCCATGGCCTTTTTAGCTGTGCTTCTGATAGCGCTGCCCATCACTGCTTTCGCCTGGGACTGGCCGAATAACAATACTATTGGCGCTCAAATATGTGACCAAATTGAGTGTGGAAAGGGAACATGCAAAGCCGATTTAACCAAACCATTAGGTTACACCTGCCAGTGCGACGCTAACTGGAAGCGAACGCGTGACGGTGATGATGATATGGAGTTTCTCCCCTGTGTCATCCCCAACTGCTCACTGAACTACAACTGCCAGCCAGCTCCGCCTCCAGTTGCTCAGAATGATGTTCCTAACAATATATCCGCCTTTGATCCTTGTTACTATGCTTACTGCGGAGAAGGTACATGCGTAAGGAACAGCACATACCATTACACACCCTTCTGTGAATGCAAATCCAGCGCCACTAATCTTCTCGACGTCGCGGCTTTTCCCTGCTACTATCAATGCGCGCTTCAGGCTGACTGCGCGAGCCTCGGAATTAAGGTTGCAAACTCAAATTCCTCCACTGACAATAGTGAAGCTACGTCGTTTTTGCCCGGAAAGTTCCAGTTGATGGCCGTAGTGATGCTGTCTGTCGGTTTGATTCTGAGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

239

Amino Acids

26.0

Weight (kDa)

5.74

Isoelectric Point (pI)

35.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006412)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g03170 FvH4_6g03180
malus_domestica	MD04G1222300.v1.1 MD04G1222400.v1.1 MD12G1238500.v1.1
prunus_persica	Prupe.6G341400_v2.0.a1
pyrus_communis	pycom04g19670 pycom12g21920
rosa_chinensis	RchiOBHm_Chr3g0451431 RchiOBHm_Chr3g0451451
rosa_laevigata	RLG00000025659 RLG00000025660
rosa_multiflora	Rmu_sc0002575.1_g000001 Rmu_sc0009360.1_g000055 Rmu_sc0021369.1_g000004 Rmu_ssc0000091.1_g000020
rosa_roxburghii	Rroxscaffold_164G00436480 Rroxscaffold_6G00428850
rosa_rugosa	Rorug02G0633900
rosa_samantha	Rh3AG036800 Rh3AG036900 Rh3BG037400 Rh3CG036000 Rh3DG036900 Rh3DG037000
rosa_wichuraiana	Rw3G002720 Rw3G002730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	281
AatII	GACGTC	1 cut(s)	540
Acc36I	ACCTGC	1 cut(s)	281
AccB7I	CCANNNNNTGG	1 cut(s)	673
AccII	CGCG	4 cut(s)	304, 542, 569, 587
AciI	CCGC	4 cut(s)	383, 423, 453, 542
AclWI	GGATC	1 cut(s)	425
AcoI	YGGCCR	2 cut(s)	176, 675
AcsI	RAATTY	1 cut(s)	616
AcuI	CTGAAG	1 cut(s)	557
AcyI	GRCGYC	1 cut(s)	537
AfaI	GTAC	1 cut(s)	463
AfeI	AGCGCT	1 cut(s)	147
AfiI	CCNNNNNNNGG	2 cut(s)	174, 673
AflIII	ACRYGT	1 cut(s)	302
AjnI	CCWGG	1 cut(s)	167
AluBI	AGCT	3 cut(s)	131, 380, 641
AluI	AGCT	3 cut(s)	131, 380, 641
AlwI	GGATC	1 cut(s)	425
Aor51HI	AGCGCT	1 cut(s)	147
AoxI	GGCC	3 cut(s)	120, 176, 675
ApeKI	GCWGC	1 cut(s)	148
ApoI	RAATTY	1 cut(s)	616
AspLEI	GCGC	6 cut(s)	148, 200, 521, 569, 571, 587
AsuC2I	CCSGG	1 cut(s)	657
AsuHPI	GGTGA	2 cut(s)	20, 323
BaeI	ACNNNNGTAYC	2 cut(s)	453, 486
BbvI	GCAGC	1 cut(s)	135
BccI	CCATC	2 cut(s)	161, 667
BceAI	ACGGC	1 cut(s)	662
BciT130I	CCWGG	1 cut(s)	169
BcnI	CCSGG	1 cut(s)	657
BfoI	RGCGCY	3 cut(s)	149, 201, 522
BfuAI	ACCTGC	1 cut(s)	281
BisI	GCNGC	2 cut(s)	149, 543
BlsI	GCNGC	2 cut(s)	150, 544
Bme1390I	CCNGG	2 cut(s)	169, 657
BmrFI	CCNGG	2 cut(s)	169, 657
BmsI	GCATC	1 cut(s)	675
BpmI	CTGGAG	1 cut(s)	372
BpuMI	CCSGG	1 cut(s)	657
BsaHI	GRCGYC	1 cut(s)	537
BsaJI	CCNNGG	3 cut(s)	117, 168, 592
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 673
Bse1I	ACTGG	5 cut(s)	179, 277, 296, 389, 667
BseBI	CCWGG	1 cut(s)	169
BseDI	CCNNGG	3 cut(s)	117, 168, 592
BseGI	GGATG	2 cut(s)	19, 342
BseLI	CCNNNNNNNGG	2 cut(s)	174, 673
BseMII	CTCAG	2 cut(s)	410, 698
BseNI	ACTGG	5 cut(s)	179, 277, 296, 389, 667
BsePI	GCGCGC	1 cut(s)	567
BseXI	GCAGC	1 cut(s)	135
Bsh1236I	CGCG	4 cut(s)	304, 542, 569, 587
BshFI	GGCC	3 cut(s)	122, 178, 677
BsiSI	CCGG	1 cut(s)	657
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	2 cut(s)	174, 673
BsmFI	GGGAC	1 cut(s)	185
BsmI	GAATGC	1 cut(s)	512
BsnI	GGCC	3 cut(s)	122, 178, 677
Bsp143I	GATC	1 cut(s)	430
Bsp19I	CCATGG	1 cut(s)	117
BspACI	CCGC	4 cut(s)	383, 423, 453, 542
BspANI	GGCC	3 cut(s)	122, 178, 677
BspCNI	CTCAG	2 cut(s)	409, 699
BspFNI	CGCG	4 cut(s)	304, 542, 569, 587
BspMI	ACCTGC	1 cut(s)	281
BspPI	GGATC	1 cut(s)	425
BsrI	ACTGG	5 cut(s)	179, 277, 296, 389, 667
BssECI	CCNNGG	3 cut(s)	117, 168, 592
BssHII	GCGCGC	1 cut(s)	567
BssMI	GATC	1 cut(s)	430
BssNI	GRCGYC	1 cut(s)	537
BssT1I	CCWWGG	1 cut(s)	117
Bst2UI	CCWGG	1 cut(s)	169
Bst4CI	ACNGT	1 cut(s)	311
BstACI	GRCGYC	1 cut(s)	537
BstC8I	GCNNGC	4 cut(s)	374, 378, 569, 589
BstDEI	CTNAG	2 cut(s)	396, 707
BstDSI	CCRYGG	1 cut(s)	117
BstF5I	GGATG	2 cut(s)	19, 342
BstFNI	CGCG	4 cut(s)	304, 542, 569, 587
BstH2I	RGCGCY	3 cut(s)	149, 201, 522
BstHHI	GCGC	6 cut(s)	148, 200, 521, 569, 571, 587
BstKTI	GATC	1 cut(s)	433
BstMBI	GATC	1 cut(s)	430
BstMWI	GCNNNNNNNGC	5 cut(s)	128, 382, 516, 575, 584
BstNI	CCWGG	1 cut(s)	169
BstNSI	RCATGY	2 cut(s)	240, 468
BstSCI	CCNGG	2 cut(s)	167, 655
BstUI	CGCG	4 cut(s)	304, 542, 569, 587
BstV1I	GCAGC	1 cut(s)	135
BsuRI	GGCC	3 cut(s)	122, 178, 677
BtgI	CCRYGG	1 cut(s)	117
BtsCI	GGATG	2 cut(s)	19, 342
BtsI	GCAGTG	1 cut(s)	156
BtsIMutI	CAGTG	4 cut(s)	156, 284, 356, 624
BveI	ACCTGC	1 cut(s)	281
Cac8I	GCNNGC	4 cut(s)	374, 378, 569, 589
CfoI	GCGC	6 cut(s)	148, 200, 521, 569, 571, 587
CseI	GACGC	1 cut(s)	293
Csp6I	GTAC	1 cut(s)	462
CviAII	CATG	3 cut(s)	118, 237, 465
CviQI	GTAC	1 cut(s)	462
DdeI	CTNAG	2 cut(s)	396, 707
DpnI	GATC	1 cut(s)	432
DpnII	GATC	1 cut(s)	430
EaeI	YGGCCR	2 cut(s)	176, 675
EciI	GGCGGA	2 cut(s)	372, 412
Eco130I	CCWWGG	1 cut(s)	117
Eco47III	AGCGCT	1 cut(s)	147
Eco57I	CTGAAG	1 cut(s)	557
EcoRII	CCWGG	1 cut(s)	167
EcoT14I	CCWWGG	1 cut(s)	117
ErhI	CCWWGG	1 cut(s)	117
FaeI	CATG	3 cut(s)	121, 240, 468
FaqI	GGGAC	1 cut(s)	185
FatI	CATG	3 cut(s)	117, 236, 464
Fnu4HI	GCNGC	2 cut(s)	149, 543
FokI	GGATG	2 cut(s)	6, 329
Fsp4HI	GCNGC	2 cut(s)	149, 543
GlaI	GCGC	6 cut(s)	147, 199, 520, 568, 570, 586
GluI	GCNGC	2 cut(s)	149, 543
GsuI	CTGGAG	1 cut(s)	372
HaeII	RGCGCY	3 cut(s)	149, 201, 522
HaeIII	GGCC	3 cut(s)	122, 178, 677
HapII	CCGG	1 cut(s)	657
HgaI	GACGC	1 cut(s)	293
HhaI	GCGC	6 cut(s)	148, 200, 521, 569, 571, 587
Hin1I	GRCGYC	1 cut(s)	537
Hin1II	CATG	3 cut(s)	121, 240, 468
Hin6I	GCGC	6 cut(s)	146, 198, 519, 567, 569, 585
HinP1I	GCGC	6 cut(s)	146, 198, 519, 567, 569, 585
HinfI	GANTC	1 cut(s)	703
HpaII	CCGG	1 cut(s)	657
HphI	GGTGA	2 cut(s)	20, 323
Hpy188I	TCNGA	4 cut(s)	141, 399, 596, 708
Hpy188III	TCNNGA	1 cut(s)	533
Hpy99I	CGWCG	4 cut(s)	287, 539, 542, 649
HpyAV	CCTTC	4 cut(s)	35, 41, 452, 508
HpyCH4III	ACNGT	1 cut(s)	311
HpyCH4IV	ACGT	2 cut(s)	537, 644
HpyCH4V	TGCA	3 cut(s)	240, 510, 608
HpyF10VI	GCNNNNNNNGC	5 cut(s)	128, 382, 516, 575, 584
HpyF3I	CTNAG	2 cut(s)	396, 707
HpySE526I	ACGT	2 cut(s)	537, 644
Hsp92I	GRCGYC	1 cut(s)	537
Hsp92II	CATG	3 cut(s)	121, 240, 468
HspAI	GCGC	6 cut(s)	146, 198, 519, 567, 569, 585
Kzo9I	GATC	1 cut(s)	430
LmnI	GCTCC	1 cut(s)	385
Lsp1109I	GCAGC	1 cut(s)	135
LweI	GCATC	1 cut(s)	675
MaeII	ACGT	2 cut(s)	537, 644
MaeIII	GTNAC	4 cut(s)	209, 266, 305, 437
MalI	GATC	1 cut(s)	432
MboI	GATC	1 cut(s)	430
MboII	GAAGA	1 cut(s)	521
MluCI	AATT	3 cut(s)	216, 597, 616
MluI	ACGCGT	1 cut(s)	302
MnlI	CCTC	6 cut(s)	53, 57, 396, 602, 631, 702
MseI	TTAA	2 cut(s)	251, 600
MspI	CCGG	1 cut(s)	657
MspR9I	CCNGG	2 cut(s)	169, 657
Mva1269I	GAATGC	1 cut(s)	512
MvaI	CCWGG	1 cut(s)	169
MvnI	CGCG	4 cut(s)	304, 542, 569, 587
MwoI	GCNNNNNNNGC	5 cut(s)	128, 382, 516, 575, 584
NciI	CCSGG	1 cut(s)	657
NcoI	CCATGG	1 cut(s)	117
NdeII	GATC	1 cut(s)	430
NlaIII	CATG	3 cut(s)	121, 240, 468
NmuCI	GTSAC	2 cut(s)	209, 305
NspI	RCATGY	2 cut(s)	240, 468
PaqCI	CACCTGC	1 cut(s)	281
PauI	GCGCGC	1 cut(s)	567
PctI	GAATGC	1 cut(s)	512
PfeI	GAWTC	1 cut(s)	703
PflMI	CCANNNNNTGG	1 cut(s)	673
PkrI	GCNGC	2 cut(s)	150, 544
Psp6I	CCWGG	1 cut(s)	167
PspGI	CCWGG	1 cut(s)	167
PsrI	GAACNNNNNNTAC	2 cut(s)	467, 499
PteI	GCGCGC	1 cut(s)	567
RsaI	GTAC	1 cut(s)	463
RsaNI	GTAC	1 cut(s)	462
SaqAI	TTAA	2 cut(s)	251, 600
SatI	GCNGC	2 cut(s)	149, 543
Sau3AI	GATC	1 cut(s)	430
ScrFI	CCNGG	2 cut(s)	169, 657
SfaNI	GCATC	1 cut(s)	675
Sse9I	AATT	3 cut(s)	216, 597, 616
SsiI	CCGC	4 cut(s)	383, 423, 453, 542
StyD4I	CCNGG	2 cut(s)	167, 655
StyI	CCWWGG	1 cut(s)	117
TaaI	ACNGT	1 cut(s)	311
TaiI	ACGT	2 cut(s)	540, 647
TaqI	TCGA	1 cut(s)	534
TasI	AATT	3 cut(s)	216, 597, 616
TauI	GCSGC	1 cut(s)	545
TfiI	GAWTC	1 cut(s)	703
Tru1I	TTAA	2 cut(s)	251, 600
Tru9I	TTAA	2 cut(s)	251, 600
TscAI	CASTG	4 cut(s)	163, 284, 363, 631
TseFI	GTSAC	2 cut(s)	209, 305
TseI	GCWGC	1 cut(s)	148
Tsp45I	GTSAC	2 cut(s)	209, 305
TspRI	CASTG	4 cut(s)	163, 284, 363, 631
Van91I	CCANNNNNTGG	1 cut(s)	673
XapI	RAATTY	1 cut(s)	616
XceI	RCATGY	2 cut(s)	240, 468
XcmI	CCANNNNNNNNNTGG	1 cut(s)	221
ZraI	GACGTC	1 cut(s)	538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.