RchiOBHm_Chr3g0451451

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0006412
Physical Location & Seq
Reverse (-)
2507045 .. 2509041
1997 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ41871

Sequence Viewer

Length: 636 bp
ATGGCTTTCTCTAAATCCATGGCTTTGTTAGCTACTCTTCTTGTTCTGCTACCCATGGCTACTTACGCTGTGGACTGGCCAGATATTTCTCCTACTATTGCCGATGAAATATGTAAACAAGTTGAGTGTGGAAAAGGAAATTGCAGCTTCGACACCAGTGAGCCATTAGGCTATACCTGCGAGTGCGACCAAGGATGGAAGCGAACCGCTGAAGGCAACGATAATCTTAAGTTTCTCCCTTGTGTCATCCCTAACTGCACACTGGAATACAACGGTTGCCAAGCACCTCCTAAAGTTCCTGATTACACAGAAGTCCCACGCAACTTATCTGCTTTCGATCCTTGCTACTGGGTTTACTGTGGAGAAGGTACATGCGTCAAGAACTCTACCTATCTATACACACCAGAGTGTAAATGCAACTCAGGGGCTACTAATCTTCTTGGCGTCAGTGTATTCCCCTGCTACAACGAATGCACACTTCAACCTGACTGTGCTGCCCTTGGAATCAAGGTTGCAGATTCGACTAGTACCTCTCCCGATGGAACGACGACTGACAGTAATAAAGCTGCCGACTTCATGCCAGGCAAATTCCAGTTGATGACTATAGTAATGGTGTCTGTGGGTATGATGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

22.84

Weight (kDa)

4.35

Isoelectric Point (pI)

33.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 185
AciI CCGC 1 cut(s) 207
AclWI GGATC 1 cut(s) 332
AcoI YGGCCR 1 cut(s) 77
AcsI RAATTY 1 cut(s) 587
AcuI CTGAAG 1 cut(s) 231
AcyI GRCGYC 1 cut(s) 444
AfaI GTAC 2 cut(s) 370, 529
AflII CTTAAG 1 cut(s) 227
AgsI TTSAA 1 cut(s) 482
AhlI ACTAGT 1 cut(s) 524
AjnI CCWGG 1 cut(s) 580
AleI CACNNNNGTG 1 cut(s) 406
AluBI AGCT 3 cut(s) 32, 147, 566
AluI AGCT 3 cut(s) 32, 147, 566
AlwI GGATC 1 cut(s) 332
AoxI GGCC 1 cut(s) 77
ApeKI GCWGC 3 cut(s) 144, 494, 566
ApoI RAATTY 1 cut(s) 587
BaeI ACNNNNGTAYC 2 cut(s) 360, 393
BalI TGGCCA 1 cut(s) 79
BbvI GCAGC 3 cut(s) 156, 481, 553
BccI CCATC 2 cut(s) 189, 533
BciT130I CCWGG 1 cut(s) 582
BcuI ACTAGT 1 cut(s) 524
BfaI CTAG 1 cut(s) 525
BfmI CTRYAG 1 cut(s) 603
BfrI CTTAAG 1 cut(s) 227
BfuAI ACCTGC 1 cut(s) 185
BisI GCNGC 3 cut(s) 145, 495, 567
BlsI GCNGC 3 cut(s) 146, 496, 568
Bme1390I CCNGG 1 cut(s) 582
BmrFI CCNGG 1 cut(s) 582
BmrI ACTGGG 1 cut(s) 358
BmsI GCATC 1 cut(s) 618
BmuI ACTGGG 1 cut(s) 358
BsaHI GRCGYC 1 cut(s) 444
BsaJI CCNNGG 4 cut(s) 18, 54, 190, 499
Bse1I ACTGG 5 cut(s) 80, 156, 267, 353, 592
BseBI CCWGG 1 cut(s) 582
BseDI CCNNGG 4 cut(s) 18, 54, 190, 499
BseGI GGATG 2 cut(s) 200, 246
BseMII CTCAG 1 cut(s) 435
BseNI ACTGG 5 cut(s) 80, 156, 267, 353, 592
BseXI GCAGC 3 cut(s) 156, 481, 553
BsgI GTGCAG 1 cut(s) 241
BshFI GGCC 1 cut(s) 79
BslFI GGGAC 1 cut(s) 299
BsmFI GGGAC 1 cut(s) 299
BsmI GAATGC 1 cut(s) 476
BsnI GGCC 1 cut(s) 79
Bsp143I GATC 1 cut(s) 337
Bsp19I CCATGG 2 cut(s) 18, 54
BspACI CCGC 1 cut(s) 207
BspANI GGCC 1 cut(s) 79
BspCNI CTCAG 1 cut(s) 434
BspMI ACCTGC 1 cut(s) 185
BspPI GGATC 1 cut(s) 332
BspTI CTTAAG 1 cut(s) 227
BsrI ACTGG 5 cut(s) 80, 156, 267, 353, 592
BssECI CCNNGG 4 cut(s) 18, 54, 190, 499
BssMI GATC 1 cut(s) 337
BssNI GRCGYC 1 cut(s) 444
BssT1I CCWWGG 4 cut(s) 18, 54, 190, 499
Bst2UI CCWGG 1 cut(s) 582
Bst4CI ACNGT 4 cut(s) 275, 359, 491, 557
Bst6I CTCTTC 1 cut(s) 42
BstACI GRCGYC 1 cut(s) 444
BstAFI CTTAAG 1 cut(s) 227
BstDEI CTNAG 1 cut(s) 421
BstDSI CCRYGG 2 cut(s) 18, 54
BstF5I GGATG 2 cut(s) 200, 246
BstKTI GATC 1 cut(s) 340
BstMBI GATC 1 cut(s) 337
BstMWI GCNNNNNNNGC 3 cut(s) 29, 65, 177
BstNI CCWGG 1 cut(s) 582
BstNSI RCATGY 1 cut(s) 375
BstSCI CCNGG 1 cut(s) 580
BstSFI CTRYAG 1 cut(s) 603
BstV1I GCAGC 3 cut(s) 156, 481, 553
BsuRI GGCC 1 cut(s) 79
BtgI CCRYGG 2 cut(s) 18, 54
BtsCI GGATG 2 cut(s) 200, 246
BtsIMutI CAGTG 3 cut(s) 163, 260, 454
BveI ACCTGC 1 cut(s) 185
CseI GACGC 2 cut(s) 364, 433
Csp6I GTAC 2 cut(s) 369, 528
CviAII CATG 4 cut(s) 19, 55, 372, 577
CviQI GTAC 2 cut(s) 369, 528
DdeI CTNAG 1 cut(s) 421
DpnI GATC 1 cut(s) 339
DpnII GATC 1 cut(s) 337
EaeI YGGCCR 1 cut(s) 77
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Eco130I CCWWGG 4 cut(s) 18, 54, 190, 499
Eco57I CTGAAG 1 cut(s) 231
EcoRII CCWGG 1 cut(s) 580
EcoT14I CCWWGG 4 cut(s) 18, 54, 190, 499
ErhI CCWWGG 4 cut(s) 18, 54, 190, 499
FaeI CATG 4 cut(s) 22, 58, 375, 580
FaiI YATR 9 cut(s) 20, 56, 112, 174, 373, 397, 578, 605, 626
FaqI GGGAC 1 cut(s) 299
FatI CATG 4 cut(s) 18, 54, 371, 576
Fnu4HI GCNGC 3 cut(s) 145, 495, 567
FokI GGATG 2 cut(s) 207, 233
Fsp4HI GCNGC 3 cut(s) 145, 495, 567
FspBI CTAG 1 cut(s) 525
GluI GCNGC 3 cut(s) 145, 495, 567
HaeIII GGCC 1 cut(s) 79
HgaI GACGC 2 cut(s) 364, 433
Hin1I GRCGYC 1 cut(s) 444
Hin1II CATG 4 cut(s) 22, 58, 375, 580
HinfI GANTC 2 cut(s) 504, 518
Hpy166II GTNNAC 3 cut(s) 73, 116, 355
Hpy188III TCNNGA 3 cut(s) 299, 379, 536
Hpy8I GTNNAC 3 cut(s) 73, 116, 355
Hpy99I CGWCG 1 cut(s) 550
HpyAV CCTTC 2 cut(s) 206, 359
HpyCH4III ACNGT 4 cut(s) 275, 359, 491, 557
HpyCH4V TGCA 5 cut(s) 144, 258, 417, 474, 515
HpyF10VI GCNNNNNNNGC 3 cut(s) 29, 65, 177
HpyF3I CTNAG 1 cut(s) 421
Hsp92I GRCGYC 1 cut(s) 444
Hsp92II CATG 4 cut(s) 22, 58, 375, 580
Kzo9I GATC 1 cut(s) 337
Lsp1109I GCAGC 3 cut(s) 156, 481, 553
LweI GCATC 1 cut(s) 618
MaeI CTAG 1 cut(s) 525
MalI GATC 1 cut(s) 339
MboI GATC 1 cut(s) 337
MboII GAAGA 2 cut(s) 29, 428
MlsI TGGCCA 1 cut(s) 79
MluCI AATT 2 cut(s) 139, 587
MluNI TGGCCA 1 cut(s) 79
MnlI CCTC 2 cut(s) 297, 541
Mox20I TGGCCA 1 cut(s) 79
MscI TGGCCA 1 cut(s) 79
MseI TTAA 1 cut(s) 228
MslI CAYNNNNRTG 1 cut(s) 406
Msp20I TGGCCA 1 cut(s) 79
MspA1I CMGCKG 1 cut(s) 209
MspCI CTTAAG 1 cut(s) 227
MspR9I CCNGG 1 cut(s) 582
Mva1269I GAATGC 1 cut(s) 476
MvaI CCWGG 1 cut(s) 582
MwoI GCNNNNNNNGC 3 cut(s) 29, 65, 177
NcoI CCATGG 2 cut(s) 18, 54
NdeII GATC 1 cut(s) 337
NlaIII CATG 4 cut(s) 22, 58, 375, 580
NspI RCATGY 1 cut(s) 375
OliI CACNNNNGTG 1 cut(s) 406
PctI GAATGC 1 cut(s) 476
PfeI GAWTC 2 cut(s) 504, 518
PkrI GCNGC 3 cut(s) 146, 496, 568
Psp6I CCWGG 1 cut(s) 580
PspGI CCWGG 1 cut(s) 580
RsaI GTAC 2 cut(s) 370, 529
RsaNI GTAC 2 cut(s) 369, 528
RseI CAYNNNNRTG 1 cut(s) 406
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 3 cut(s) 145, 495, 567
Sau3AI GATC 1 cut(s) 337
ScrFI CCNGG 1 cut(s) 582
SfaNI GCATC 1 cut(s) 618
SfcI CTRYAG 1 cut(s) 603
SmiMI CAYNNNNRTG 1 cut(s) 406
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
SpeI ACTAGT 1 cut(s) 524
Sse9I AATT 2 cut(s) 139, 587
SsiI CCGC 1 cut(s) 207
SspMI CTAG 1 cut(s) 525
StyD4I CCNGG 1 cut(s) 580
StyI CCWWGG 4 cut(s) 18, 54, 190, 499
TaaI ACNGT 4 cut(s) 275, 359, 491, 557
TaqI TCGA 3 cut(s) 150, 336, 521
TasI AATT 2 cut(s) 139, 587
TfiI GAWTC 2 cut(s) 504, 518
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TscAI CASTG 3 cut(s) 163, 267, 454
TseI GCWGC 3 cut(s) 144, 494, 566
TspDTI ATGAA 2 cut(s) 120, 565
TspRI CASTG 3 cut(s) 163, 267, 454
Vha464I CTTAAG 1 cut(s) 227
XapI RAATTY 1 cut(s) 587
XceI RCATGY 1 cut(s) 375
XspI CTAG 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.