Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr5

Orthogroup ID

OG0006412

Physical Location & Seq

Genomic Coordinates Forward (+)

47409655 .. 47411194

Gene Structure 1540 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000025659

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCTTTCTCTAAATCCATGGCCTTGTTATCTACTCTTCTTGTTCTGCTACCCATGGCTACTTACGCTGTGGACTGGCCGGATATTTCTCCTTCTATTGCCACTGAAGTATGTAAACAAGTTGATTGTGGAAAAGGAACTTGCAGCTTCAACACCAGTGAACCATTAGCCTATACCTGCGAGTGCGAGAAAGGATGGAAGCGAACCACTGACGGCAACGATGATCTTAAGTTTCTCCCTTGTGTCATCCCTAACTGCACACTGGACTACAACGGTTGCCAAGCTCCCCCTAAAGTTCCTGATTACACAGAAGTCCCACGCAACTTATCTGCCTTTGATCCTTGCTACTGGGTTTACTGTGGAGAAGGTTCATGCGTCAAGAACTCTACCTATCTATACACACCAGAGTGTAAATGCAACTCAGGGGCTTCTAACCTTCTTGGCATCAGTGTATACCCCTGCTACAATCAATGCACACTTCAACCTGACTGTGCTGCCCTTGGAATCAAAGTTTCAAATTCGACTAGTACCTCCACTGGGTCGACTAACAGTAACAAAGCTACCGACTTCATGCCAGGCAAATTCCAGTTGATGACTATAGTGATGGTGTCTGTGGGTATGATGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

210

Amino Acids

22.64

Weight (kDa)

4.78

Isoelectric Point (pI)

26.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006412)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g03170 FvH4_6g03180
malus_domestica	MD04G1222300.v1.1 MD04G1222400.v1.1 MD12G1238500.v1.1
prunus_persica	Prupe.6G341400_v2.0.a1
pyrus_communis	pycom04g19670 pycom12g21920
rosa_chinensis	RchiOBHm_Chr3g0451431 RchiOBHm_Chr3g0451451
rosa_laevigata	RLG00000025659 RLG00000025660
rosa_multiflora	Rmu_sc0002575.1_g000001 Rmu_sc0009360.1_g000055 Rmu_sc0021369.1_g000004 Rmu_ssc0000091.1_g000020
rosa_roxburghii	Rroxscaffold_164G00436480 Rroxscaffold_6G00428850
rosa_rugosa	Rorug02G0633900
rosa_samantha	Rh3AG036800 Rh3AG036900 Rh3BG037400 Rh3CG036000 Rh3DG036900 Rh3DG037000
rosa_wichuraiana	Rw3G002720 Rw3G002730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	185
AccI	GTMKAC	2 cut(s)	453, 542
AclWI	GGATC	1 cut(s)	332
AcoI	YGGCCR	1 cut(s)	77
AcsI	RAATTY	2 cut(s)	517, 581
AcuI	CTGAAG	1 cut(s)	126
AfaI	GTAC	1 cut(s)	529
AfiI	CCNNNNNNNGG	1 cut(s)	537
AflII	CTTAAG	1 cut(s)	227
AgsI	TTSAA	3 cut(s)	151, 482, 516
AhlI	ACTAGT	1 cut(s)	524
AjnI	CCWGG	1 cut(s)	574
AleI	CACNNNNGTG	1 cut(s)	406
AluBI	AGCT	3 cut(s)	147, 284, 560
AluI	AGCT	3 cut(s)	147, 284, 560
AlwI	GGATC	1 cut(s)	332
AoxI	GGCC	2 cut(s)	21, 77
ApeKI	GCWGC	2 cut(s)	144, 494
ApoI	RAATTY	2 cut(s)	517, 581
BbvI	GCAGC	2 cut(s)	156, 481
BccI	CCATC	2 cut(s)	189, 598
BceAI	ACGGC	1 cut(s)	229
BciT130I	CCWGG	1 cut(s)	576
BcuI	ACTAGT	1 cut(s)	524
BfaI	CTAG	1 cut(s)	525
BfmI	CTRYAG	1 cut(s)	597
BfrI	CTTAAG	1 cut(s)	227
BfuAI	ACCTGC	1 cut(s)	185
BisI	GCNGC	2 cut(s)	145, 495
BlsI	GCNGC	2 cut(s)	146, 496
Bme1390I	CCNGG	1 cut(s)	576
BmrFI	CCNGG	1 cut(s)	576
BmrI	ACTGGG	2 cut(s)	358, 546
BmsI	GCATC	2 cut(s)	453, 612
BmuI	ACTGGG	2 cut(s)	358, 546
BsaJI	CCNNGG	3 cut(s)	18, 54, 499
Bsc4I	CCNNNNNNNGG	1 cut(s)	537
Bse1I	ACTGG	6 cut(s)	80, 156, 267, 353, 541, 586
BseBI	CCWGG	1 cut(s)	576
BseDI	CCNNGG	3 cut(s)	18, 54, 499
BseGI	GGATG	2 cut(s)	200, 246
BseLI	CCNNNNNNNGG	1 cut(s)	537
BseMII	CTCAG	1 cut(s)	435
BseNI	ACTGG	6 cut(s)	80, 156, 267, 353, 541, 586
BseXI	GCAGC	2 cut(s)	156, 481
BsgI	GTGCAG	1 cut(s)	241
BshFI	GGCC	2 cut(s)	23, 79
BsiSI	CCGG	1 cut(s)	80
BslFI	GGGAC	1 cut(s)	299
BslI	CCNNNNNNNGG	1 cut(s)	537
BsmFI	GGGAC	1 cut(s)	299
BsnI	GGCC	2 cut(s)	23, 79
Bsp143I	GATC	2 cut(s)	223, 337
Bsp19I	CCATGG	2 cut(s)	18, 54
BspANI	GGCC	2 cut(s)	23, 79
BspCNI	CTCAG	1 cut(s)	434
BspMI	ACCTGC	1 cut(s)	185
BspPI	GGATC	1 cut(s)	332
BspTI	CTTAAG	1 cut(s)	227
BsrI	ACTGG	6 cut(s)	80, 156, 267, 353, 541, 586
BssECI	CCNNGG	3 cut(s)	18, 54, 499
BssMI	GATC	2 cut(s)	223, 337
BssNAI	GTATAC	1 cut(s)	454
BssT1I	CCWWGG	3 cut(s)	18, 54, 499
Bst1107I	GTATAC	1 cut(s)	454
Bst2UI	CCWGG	1 cut(s)	576
Bst4CI	ACNGT	4 cut(s)	275, 359, 491, 551
Bst6I	CTCTTC	1 cut(s)	42
BstAFI	CTTAAG	1 cut(s)	227
BstDEI	CTNAG	1 cut(s)	421
BstDSI	CCRYGG	2 cut(s)	18, 54
BstF5I	GGATG	2 cut(s)	200, 246
BstKTI	GATC	2 cut(s)	226, 340
BstMBI	GATC	2 cut(s)	223, 337
BstMWI	GCNNNNNNNGC	1 cut(s)	65
BstNI	CCWGG	1 cut(s)	576
BstSCI	CCNGG	1 cut(s)	574
BstSFI	CTRYAG	1 cut(s)	597
BstV1I	GCAGC	2 cut(s)	156, 481
BstZ17I	GTATAC	1 cut(s)	454
BsuRI	GGCC	2 cut(s)	23, 79
BtgI	CCRYGG	2 cut(s)	18, 54
BtsCI	GGATG	2 cut(s)	200, 246
BtsIMutI	CAGTG	6 cut(s)	102, 163, 207, 260, 454, 534
BveI	ACCTGC	1 cut(s)	185
CseI	GACGC	1 cut(s)	364
Csp6I	GTAC	1 cut(s)	528
CviAII	CATG	4 cut(s)	19, 55, 372, 571
CviJI	RGCY	9 cut(s)	5, 23, 59, 79, 147, 170, 284, 428, 560
CviKI_1	RGCY	9 cut(s)	5, 23, 59, 79, 147, 170, 284, 428, 560
CviQI	GTAC	1 cut(s)	528
DdeI	CTNAG	1 cut(s)	421
DpnI	GATC	2 cut(s)	225, 339
DpnII	GATC	2 cut(s)	223, 337
EaeI	YGGCCR	1 cut(s)	77
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco130I	CCWWGG	3 cut(s)	18, 54, 499
Eco57I	CTGAAG	1 cut(s)	126
EcoRII	CCWGG	1 cut(s)	574
EcoT14I	CCWWGG	3 cut(s)	18, 54, 499
ErhI	CCWWGG	3 cut(s)	18, 54, 499
FaeI	CATG	4 cut(s)	22, 58, 375, 574
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	4 cut(s)	18, 54, 371, 570
FblI	GTMKAC	2 cut(s)	453, 542
Fnu4HI	GCNGC	2 cut(s)	145, 495
FokI	GGATG	2 cut(s)	207, 233
Fsp4HI	GCNGC	2 cut(s)	145, 495
FspBI	CTAG	1 cut(s)	525
GluI	GCNGC	2 cut(s)	145, 495
HaeIII	GGCC	2 cut(s)	23, 79
HapII	CCGG	1 cut(s)	80
HgaI	GACGC	1 cut(s)	364
Hin1II	CATG	4 cut(s)	22, 58, 375, 574
HincII	GTYRAC	1 cut(s)	543
HindII	GTYRAC	1 cut(s)	543
HinfI	GANTC	1 cut(s)	504
HpaII	CCGG	1 cut(s)	80
Hpy166II	GTNNAC	6 cut(s)	73, 116, 161, 355, 454, 543
Hpy188III	TCNNGA	2 cut(s)	299, 379
Hpy8I	GTNNAC	6 cut(s)	73, 116, 161, 355, 454, 543
HpyAV	CCTTC	3 cut(s)	102, 359, 446
HpyCH4III	ACNGT	4 cut(s)	275, 359, 491, 551
HpyCH4V	TGCA	4 cut(s)	144, 258, 417, 474
HpyF10VI	GCNNNNNNNGC	1 cut(s)	65
HpyF3I	CTNAG	1 cut(s)	421
Hsp92II	CATG	4 cut(s)	22, 58, 375, 574
Kzo9I	GATC	2 cut(s)	223, 337
LmnI	GCTCC	1 cut(s)	289
Lsp1109I	GCAGC	2 cut(s)	156, 481
LweI	GCATC	2 cut(s)	453, 612
MaeI	CTAG	1 cut(s)	525
MaeIII	GTNAC	1 cut(s)	551
MalI	GATC	2 cut(s)	225, 339
MboI	GATC	2 cut(s)	223, 337
MboII	GAAGA	1 cut(s)	29
MluCI	AATT	2 cut(s)	517, 581
MnlI	CCTC	1 cut(s)	541
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	1 cut(s)	406
MspCI	CTTAAG	1 cut(s)	227
MspI	CCGG	1 cut(s)	80
MspR9I	CCNGG	1 cut(s)	576
MvaI	CCWGG	1 cut(s)	576
MwoI	GCNNNNNNNGC	1 cut(s)	65
NcoI	CCATGG	2 cut(s)	18, 54
NdeII	GATC	2 cut(s)	223, 337
NlaIII	CATG	4 cut(s)	22, 58, 375, 574
OliI	CACNNNNGTG	1 cut(s)	406
PfeI	GAWTC	1 cut(s)	504
PkrI	GCNGC	2 cut(s)	146, 496
Psp6I	CCWGG	1 cut(s)	574
PspGI	CCWGG	1 cut(s)	574
RsaI	GTAC	1 cut(s)	529
RsaNI	GTAC	1 cut(s)	528
RseI	CAYNNNNRTG	1 cut(s)	406
SalI	GTCGAC	1 cut(s)	541
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	2 cut(s)	145, 495
Sau3AI	GATC	2 cut(s)	223, 337
ScrFI	CCNGG	1 cut(s)	576
SetI	ASST	9 cut(s)	149, 179, 286, 370, 392, 438, 487, 533, 562
SfaNI	GCATC	2 cut(s)	453, 612
SfcI	CTRYAG	1 cut(s)	597
SmiMI	CAYNNNNRTG	1 cut(s)	406
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
SpeI	ACTAGT	1 cut(s)	524
Sse9I	AATT	2 cut(s)	517, 581
SspMI	CTAG	1 cut(s)	525
StyD4I	CCNGG	1 cut(s)	574
StyI	CCWWGG	3 cut(s)	18, 54, 499
TaaI	ACNGT	4 cut(s)	275, 359, 491, 551
TaqI	TCGA	2 cut(s)	521, 542
TasI	AATT	2 cut(s)	517, 581
TfiI	GAWTC	1 cut(s)	504
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	6 cut(s)	109, 163, 214, 267, 454, 541
TseI	GCWGC	2 cut(s)	144, 494
TspDTI	ATGAA	2 cut(s)	360, 559
TspRI	CASTG	6 cut(s)	109, 163, 214, 267, 454, 541
Vha464I	CTTAAG	1 cut(s)	227
XapI	RAATTY	2 cut(s)	517, 581
XmiI	GTMKAC	2 cut(s)	453, 542
XspI	CTAG	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.