Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0006412

Physical Location & Seq

Genomic Coordinates Forward (+)

30327099 .. 30328873

Gene Structure 1775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1222400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGGCTTTCTCTAACTCCATGGCCTTTTTAGCTGTGCTTATAGCGCTGCCCATCGCTGCTTTCGCCTGGGACTTGCCGAATAACTCTACTATTGGCGCTAAAATATGTGACCAAATTGAGTGTGGAAAGGGAACATGCAAAGCCGATTTAACCAAACCATTAGGTTACACATGCGAGTGCGACGCTAACTGGAAGCGAACGCGTGACGGTGACGATGATCTGCAGTTTCTCCCCTGTGTCATCCCCAACTGCTCACTGAACACCAACTGCCAGCCAGCTCCACCTCCAGTTCCTCAGAATGATGTTCCTAACAATATATCCGCCTTTGATCCTTGTTACTATGCTTACTGCGGAGAAGGTACATGCGTAAGGAACAGCACATACCATTACACACCCTTCTGTGAATGCAAATCCAGCGCCACTAATCTTCTCGACGTCAAGGCTTTTCCCTGCTACTATCAATGCGCGCTTCAGGCTGACTGCGCGAGCCTCGGAATTAAGGTTGCAGACTCAAATTCCTCCACTGACAATAGTGAAGCTACGTCGTTTTTGCCCGGAAAGTTCCAGTTGATGGCCGTGGTGATGCTGTCTGTGGGTCTGATTCTGAGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

205

Amino Acids

22.08

Weight (kDa)

4.75

Isoelectric Point (pI)

41.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006412)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g03170 FvH4_6g03180
malus_domestica	MD04G1222300.v1.1 MD04G1222400.v1.1 MD12G1238500.v1.1
prunus_persica	Prupe.6G341400_v2.0.a1
pyrus_communis	pycom04g19670 pycom12g21920
rosa_chinensis	RchiOBHm_Chr3g0451431 RchiOBHm_Chr3g0451451
rosa_laevigata	RLG00000025659 RLG00000025660
rosa_multiflora	Rmu_sc0002575.1_g000001 Rmu_sc0009360.1_g000055 Rmu_sc0021369.1_g000004 Rmu_ssc0000091.1_g000020
rosa_roxburghii	Rroxscaffold_164G00436480 Rroxscaffold_6G00428850
rosa_rugosa	Rorug02G0633900
rosa_samantha	Rh3AG036800 Rh3AG036900 Rh3BG037400 Rh3CG036000 Rh3DG036900 Rh3DG037000
rosa_wichuraiana	Rw3G002720 Rw3G002730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	438
AccB7I	CCANNNNNTGG	1 cut(s)	571
AccII	CGCG	3 cut(s)	202, 467, 485
AciI	CCGC	2 cut(s)	321, 351
AclWI	GGATC	1 cut(s)	323
AcoI	YGGCCR	1 cut(s)	573
AcsI	RAATTY	1 cut(s)	514
AcuI	CTGAAG	1 cut(s)	455
AcyI	GRCGYC	1 cut(s)	435
AfaI	GTAC	1 cut(s)	361
AfeI	AGCGCT	1 cut(s)	45
AfiI	CCNNNNNNNGG	1 cut(s)	571
AflIII	ACRYGT	1 cut(s)	200
AjnI	CCWGG	1 cut(s)	65
AluBI	AGCT	3 cut(s)	32, 278, 539
AluI	AGCT	3 cut(s)	32, 278, 539
AlwI	GGATC	1 cut(s)	323
Aor51HI	AGCGCT	1 cut(s)	45
AoxI	GGCC	2 cut(s)	21, 573
ApeKI	GCWGC	2 cut(s)	46, 56
ApoI	RAATTY	1 cut(s)	514
AspLEI	GCGC	6 cut(s)	46, 98, 419, 467, 469, 485
AsuC2I	CCSGG	1 cut(s)	555
AsuHPI	GGTGA	2 cut(s)	221, 592
BaeI	ACNNNNGTAYC	2 cut(s)	351, 384
BbvI	GCAGC	2 cut(s)	33, 43
BccI	CCATC	2 cut(s)	59, 565
BceAI	ACGGC	1 cut(s)	560
BciT130I	CCWGG	1 cut(s)	67
BcnI	CCSGG	1 cut(s)	555
BfmI	CTRYAG	1 cut(s)	221
BfoI	RGCGCY	3 cut(s)	47, 99, 420
BisI	GCNGC	2 cut(s)	47, 57
BlsI	GCNGC	2 cut(s)	48, 58
Bme1390I	CCNGG	2 cut(s)	67, 555
BmrFI	CCNGG	2 cut(s)	67, 555
BmsI	GCATC	1 cut(s)	573
BpmI	CTGGAG	1 cut(s)	270
BpuMI	CCSGG	1 cut(s)	555
BsaHI	GRCGYC	1 cut(s)	435
BsaJI	CCNNGG	4 cut(s)	18, 66, 490, 576
Bsc4I	CCNNNNNNNGG	1 cut(s)	571
Bse1I	ACTGG	3 cut(s)	194, 287, 565
BseBI	CCWGG	1 cut(s)	67
BseDI	CCNNGG	4 cut(s)	18, 66, 490, 576
BseGI	GGATG	1 cut(s)	240
BseLI	CCNNNNNNNGG	1 cut(s)	571
BseMII	CTCAG	2 cut(s)	308, 596
BseNI	ACTGG	3 cut(s)	194, 287, 565
BsePI	GCGCGC	1 cut(s)	465
BseXI	GCAGC	2 cut(s)	33, 43
Bsh1236I	CGCG	3 cut(s)	202, 467, 485
BshFI	GGCC	2 cut(s)	23, 575
BsiSI	CCGG	1 cut(s)	555
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	1 cut(s)	571
BsmFI	GGGAC	1 cut(s)	83
BsmI	GAATGC	1 cut(s)	410
BsnI	GGCC	2 cut(s)	23, 575
Bsp143I	GATC	2 cut(s)	217, 328
Bsp19I	CCATGG	1 cut(s)	18
BspACI	CCGC	2 cut(s)	321, 351
BspANI	GGCC	2 cut(s)	23, 575
BspCNI	CTCAG	2 cut(s)	307, 597
BspFNI	CGCG	3 cut(s)	202, 467, 485
BspMAI	CTGCAG	1 cut(s)	225
BspPI	GGATC	1 cut(s)	323
BsrI	ACTGG	3 cut(s)	194, 287, 565
BssECI	CCNNGG	4 cut(s)	18, 66, 490, 576
BssHII	GCGCGC	1 cut(s)	465
BssMI	GATC	2 cut(s)	217, 328
BssNI	GRCGYC	1 cut(s)	435
BssT1I	CCWWGG	1 cut(s)	18
Bst2UI	CCWGG	1 cut(s)	67
Bst4CI	ACNGT	1 cut(s)	209
BstACI	GRCGYC	1 cut(s)	435
BstC8I	GCNNGC	4 cut(s)	272, 276, 467, 487
BstDEI	CTNAG	2 cut(s)	294, 605
BstDSI	CCRYGG	2 cut(s)	18, 576
BstF5I	GGATG	1 cut(s)	240
BstFNI	CGCG	3 cut(s)	202, 467, 485
BstH2I	RGCGCY	3 cut(s)	47, 99, 420
BstHHI	GCGC	6 cut(s)	46, 98, 419, 467, 469, 485
BstKTI	GATC	2 cut(s)	220, 331
BstMBI	GATC	2 cut(s)	217, 328
BstMWI	GCNNNNNNNGC	6 cut(s)	29, 43, 62, 414, 473, 482
BstNI	CCWGG	1 cut(s)	67
BstNSI	RCATGY	3 cut(s)	138, 174, 366
BstSCI	CCNGG	2 cut(s)	65, 553
BstSFI	CTRYAG	1 cut(s)	221
BstUI	CGCG	3 cut(s)	202, 467, 485
BstV1I	GCAGC	2 cut(s)	33, 43
BsuRI	GGCC	2 cut(s)	23, 575
BtgI	CCRYGG	2 cut(s)	18, 576
BtgZI	GCGATG	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	240
BtsIMutI	CAGTG	2 cut(s)	254, 522
Cac8I	GCNNGC	4 cut(s)	272, 276, 467, 487
CfoI	GCGC	6 cut(s)	46, 98, 419, 467, 469, 485
CseI	GACGC	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	360
CviAII	CATG	4 cut(s)	19, 135, 171, 363
CviQI	GTAC	1 cut(s)	360
DdeI	CTNAG	2 cut(s)	294, 605
DpnI	GATC	2 cut(s)	219, 330
DpnII	GATC	2 cut(s)	217, 328
EaeI	YGGCCR	1 cut(s)	573
EciI	GGCGGA	1 cut(s)	310
Eco130I	CCWWGG	1 cut(s)	18
Eco47III	AGCGCT	1 cut(s)	45
Eco57I	CTGAAG	1 cut(s)	455
EcoRII	CCWGG	1 cut(s)	65
EcoT14I	CCWWGG	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	18
FaeI	CATG	4 cut(s)	22, 138, 174, 366
FaiI	YATR	9 cut(s)	20, 41, 106, 136, 172, 317, 342, 364, 382
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	4 cut(s)	18, 134, 170, 362
Fnu4HI	GCNGC	2 cut(s)	47, 57
FokI	GGATG	1 cut(s)	227
Fsp4HI	GCNGC	2 cut(s)	47, 57
GlaI	GCGC	6 cut(s)	45, 97, 418, 466, 468, 484
GluI	GCNGC	2 cut(s)	47, 57
GsuI	CTGGAG	1 cut(s)	270
HaeII	RGCGCY	3 cut(s)	47, 99, 420
HaeIII	GGCC	2 cut(s)	23, 575
HapII	CCGG	1 cut(s)	555
HgaI	GACGC	1 cut(s)	191
HhaI	GCGC	6 cut(s)	46, 98, 419, 467, 469, 485
Hin1I	GRCGYC	1 cut(s)	435
Hin1II	CATG	4 cut(s)	22, 138, 174, 366
Hin6I	GCGC	6 cut(s)	44, 96, 417, 465, 467, 483
HinP1I	GCGC	6 cut(s)	44, 96, 417, 465, 467, 483
HinfI	GANTC	2 cut(s)	509, 601
HpaII	CCGG	1 cut(s)	555
HphI	GGTGA	2 cut(s)	221, 592
Hpy188I	TCNGA	4 cut(s)	297, 494, 600, 606
Hpy188III	TCNNGA	1 cut(s)	431
Hpy99I	CGWCG	3 cut(s)	185, 437, 547
HpyAV	CCTTC	2 cut(s)	350, 406
HpyCH4III	ACNGT	1 cut(s)	209
HpyCH4IV	ACGT	2 cut(s)	435, 542
HpyCH4V	TGCA	4 cut(s)	138, 223, 408, 506
HpyF10VI	GCNNNNNNNGC	6 cut(s)	29, 43, 62, 414, 473, 482
HpyF3I	CTNAG	2 cut(s)	294, 605
HpySE526I	ACGT	2 cut(s)	435, 542
Hsp92I	GRCGYC	1 cut(s)	435
Hsp92II	CATG	4 cut(s)	22, 138, 174, 366
HspAI	GCGC	6 cut(s)	44, 96, 417, 465, 467, 483
Kzo9I	GATC	2 cut(s)	217, 328
LmnI	GCTCC	1 cut(s)	283
Lsp1109I	GCAGC	2 cut(s)	33, 43
LweI	GCATC	1 cut(s)	573
MaeII	ACGT	2 cut(s)	435, 542
MaeIII	GTNAC	5 cut(s)	107, 164, 203, 209, 335
MalI	GATC	2 cut(s)	219, 330
MboI	GATC	2 cut(s)	217, 328
MboII	GAAGA	1 cut(s)	419
MluCI	AATT	3 cut(s)	114, 495, 514
MluI	ACGCGT	1 cut(s)	200
MlyI	GAGTC	1 cut(s)	503
MnlI	CCTC	5 cut(s)	294, 303, 500, 529, 600
MseI	TTAA	2 cut(s)	149, 498
MslI	CAYNNNNRTG	1 cut(s)	175
MspI	CCGG	1 cut(s)	555
MspR9I	CCNGG	2 cut(s)	67, 555
Mva1269I	GAATGC	1 cut(s)	410
MvaI	CCWGG	1 cut(s)	67
MvnI	CGCG	3 cut(s)	202, 467, 485
MwoI	GCNNNNNNNGC	6 cut(s)	29, 43, 62, 414, 473, 482
NciI	CCSGG	1 cut(s)	555
NcoI	CCATGG	1 cut(s)	18
NdeII	GATC	2 cut(s)	217, 328
NlaIII	CATG	4 cut(s)	22, 138, 174, 366
NmuCI	GTSAC	3 cut(s)	107, 203, 209
NspI	RCATGY	3 cut(s)	138, 174, 366
PauI	GCGCGC	1 cut(s)	465
PctI	GAATGC	1 cut(s)	410
PfeI	GAWTC	1 cut(s)	601
PflMI	CCANNNNNTGG	1 cut(s)	571
PkrI	GCNGC	2 cut(s)	48, 58
PleI	GAGTC	1 cut(s)	503
PpsI	GAGTC	1 cut(s)	503
Psp6I	CCWGG	1 cut(s)	65
PspGI	CCWGG	1 cut(s)	65
PsrI	GAACNNNNNNTAC	2 cut(s)	365, 397
PstI	CTGCAG	1 cut(s)	225
PteI	GCGCGC	1 cut(s)	465
RsaI	GTAC	1 cut(s)	361
RsaNI	GTAC	1 cut(s)	360
RseI	CAYNNNNRTG	1 cut(s)	175
SaqAI	TTAA	2 cut(s)	149, 498
SatI	GCNGC	2 cut(s)	47, 57
Sau3AI	GATC	2 cut(s)	217, 328
SchI	GAGTC	1 cut(s)	503
ScrFI	CCNGG	2 cut(s)	67, 555
SetI	ASST	9 cut(s)	34, 166, 280, 286, 361, 438, 504, 541, 545
SfaNI	GCATC	1 cut(s)	573
SfcI	CTRYAG	1 cut(s)	221
SmiMI	CAYNNNNRTG	1 cut(s)	175
Sse9I	AATT	3 cut(s)	114, 495, 514
SsiI	CCGC	2 cut(s)	321, 351
StyD4I	CCNGG	2 cut(s)	65, 553
StyI	CCWWGG	1 cut(s)	18
TaaI	ACNGT	1 cut(s)	209
TaiI	ACGT	2 cut(s)	438, 545
TaqI	TCGA	1 cut(s)	432
TasI	AATT	3 cut(s)	114, 495, 514
TfiI	GAWTC	1 cut(s)	601
Tru1I	TTAA	2 cut(s)	149, 498
Tru9I	TTAA	2 cut(s)	149, 498
TscAI	CASTG	2 cut(s)	261, 529
TseFI	GTSAC	3 cut(s)	107, 203, 209
TseI	GCWGC	2 cut(s)	46, 56
Tsp45I	GTSAC	3 cut(s)	107, 203, 209
TspRI	CASTG	2 cut(s)	261, 529
Van91I	CCANNNNNTGG	1 cut(s)	571
XapI	RAATTY	1 cut(s)	514
XceI	RCATGY	3 cut(s)	138, 174, 366
XcmI	CCANNNNNNNNNTGG	1 cut(s)	119
ZraI	GACGTC	1 cut(s)	436

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.