Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0006412

Physical Location & Seq

Genomic Coordinates Reverse (-)

2459459 .. 2460976

Gene Structure 1518 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG036900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 618 bp

ATGGCTTTGTTAGCTACTCTTCTTGTTCTGCTACCCATGGCTACTTACGCTGTGGACTGGCCAGATATTTCTCCTACTATTGCCGATGAAATATGTAAACAAGTTGAGTGTGGAAAAGGAAATTGCAGCTTCAACACCAATGAGCCATTAGGCTATACCTGCGAGTGCGACCAAGGATGGAAGCGAACCGCTGAAGGCAACGATAATCTTAAGTTTCTCCCTTGTGTCATCCCTAACTGCACACTGGAATACAACGGTTGCCAAGCACCTCCTAAAGTTCCTGATTACACAGAAGTCCCACGCAACTTATCTGCTTTCGATCCTTGCTACTGGGTTTACTGTGGAGAAGGTACATGCGTCAAGAACTCTACCTACCTATACACGCCAGAGTGTAAATGCAACTCAGGGGCTACTAATCTTCTTGACGTCAGTGTATTCCCCTGCTACAACGAATGCACACTTCAACCTGACTGTGCTGCCCTTGGAATCAAAGTTGCAGATTCGACTAGTACTTCTCCCGATGGAACGACGACTGACAGTAATAAAGCTGCCGACTTCATGCCAGGCAAATTCCAGTTGATGACTATAGTGATGGTGTCTGTGGGTATGATGCTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

205

Amino Acids

22.28

Weight (kDa)

4.28

Isoelectric Point (pI)

31.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006412)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g03170 FvH4_6g03180
malus_domestica	MD04G1222300.v1.1 MD04G1222400.v1.1 MD12G1238500.v1.1
prunus_persica	Prupe.6G341400_v2.0.a1
pyrus_communis	pycom04g19670 pycom12g21920
rosa_chinensis	RchiOBHm_Chr3g0451431 RchiOBHm_Chr3g0451451
rosa_laevigata	RLG00000025659 RLG00000025660
rosa_multiflora	Rmu_sc0002575.1_g000001 Rmu_sc0009360.1_g000055 Rmu_sc0021369.1_g000004 Rmu_ssc0000091.1_g000020
rosa_roxburghii	Rroxscaffold_164G00436480 Rroxscaffold_6G00428850
rosa_rugosa	Rorug02G0633900
rosa_samantha	Rh3AG036800 Rh3AG036900 Rh3BG037400 Rh3CG036000 Rh3DG036900 Rh3DG037000
rosa_wichuraiana	Rw3G002720 Rw3G002730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	429
Acc36I	ACCTGC	1 cut(s)	167
AciI	CCGC	1 cut(s)	189
AclWI	GGATC	1 cut(s)	314
AcoI	YGGCCR	1 cut(s)	59
AcsI	RAATTY	1 cut(s)	569
AcuI	CTGAAG	1 cut(s)	213
AcyI	GRCGYC	1 cut(s)	426
AfaI	GTAC	2 cut(s)	352, 511
AflII	CTTAAG	1 cut(s)	209
AgsI	TTSAA	2 cut(s)	133, 464
AhlI	ACTAGT	1 cut(s)	506
AjnI	CCWGG	1 cut(s)	562
AluBI	AGCT	3 cut(s)	14, 129, 548
AluI	AGCT	3 cut(s)	14, 129, 548
AlwI	GGATC	1 cut(s)	314
AoxI	GGCC	1 cut(s)	59
ApeKI	GCWGC	3 cut(s)	126, 476, 548
ApoI	RAATTY	1 cut(s)	569
BaeI	ACNNNNGTAYC	2 cut(s)	342, 375
BalI	TGGCCA	1 cut(s)	61
BbvI	GCAGC	3 cut(s)	138, 463, 535
BccI	CCATC	3 cut(s)	171, 515, 586
BciT130I	CCWGG	1 cut(s)	564
BcuI	ACTAGT	1 cut(s)	506
BfaI	CTAG	1 cut(s)	507
BfmI	CTRYAG	1 cut(s)	585
BfrI	CTTAAG	1 cut(s)	209
BfuAI	ACCTGC	1 cut(s)	167
BisI	GCNGC	3 cut(s)	127, 477, 549
BlsI	GCNGC	3 cut(s)	128, 478, 550
BmcAI	AGTACT	1 cut(s)	511
Bme1390I	CCNGG	1 cut(s)	564
BmrFI	CCNGG	1 cut(s)	564
BmrI	ACTGGG	1 cut(s)	340
BmsI	GCATC	1 cut(s)	600
BmuI	ACTGGG	1 cut(s)	340
BsaHI	GRCGYC	1 cut(s)	426
BsaJI	CCNNGG	3 cut(s)	36, 172, 481
Bse1I	ACTGG	4 cut(s)	62, 249, 335, 574
BseBI	CCWGG	1 cut(s)	564
BseDI	CCNNGG	3 cut(s)	36, 172, 481
BseGI	GGATG	2 cut(s)	182, 228
BseMII	CTCAG	1 cut(s)	417
BseNI	ACTGG	4 cut(s)	62, 249, 335, 574
BseXI	GCAGC	3 cut(s)	138, 463, 535
BsgI	GTGCAG	1 cut(s)	223
BshFI	GGCC	1 cut(s)	61
BslFI	GGGAC	1 cut(s)	281
BsmFI	GGGAC	1 cut(s)	281
BsmI	GAATGC	1 cut(s)	458
BsnI	GGCC	1 cut(s)	61
Bsp143I	GATC	1 cut(s)	319
Bsp19I	CCATGG	1 cut(s)	36
BspACI	CCGC	1 cut(s)	189
BspANI	GGCC	1 cut(s)	61
BspCNI	CTCAG	1 cut(s)	416
BspMI	ACCTGC	1 cut(s)	167
BspPI	GGATC	1 cut(s)	314
BspTI	CTTAAG	1 cut(s)	209
BsrI	ACTGG	4 cut(s)	62, 249, 335, 574
BssECI	CCNNGG	3 cut(s)	36, 172, 481
BssMI	GATC	1 cut(s)	319
BssNI	GRCGYC	1 cut(s)	426
BssT1I	CCWWGG	3 cut(s)	36, 172, 481
Bst2UI	CCWGG	1 cut(s)	564
Bst4CI	ACNGT	4 cut(s)	257, 341, 473, 539
Bst6I	CTCTTC	1 cut(s)	24
BstACI	GRCGYC	1 cut(s)	426
BstAFI	CTTAAG	1 cut(s)	209
BstDEI	CTNAG	1 cut(s)	403
BstDSI	CCRYGG	1 cut(s)	36
BstF5I	GGATG	2 cut(s)	182, 228
BstKTI	GATC	1 cut(s)	322
BstMBI	GATC	1 cut(s)	319
BstMWI	GCNNNNNNNGC	3 cut(s)	11, 47, 159
BstNI	CCWGG	1 cut(s)	564
BstNSI	RCATGY	1 cut(s)	357
BstSCI	CCNGG	1 cut(s)	562
BstSFI	CTRYAG	1 cut(s)	585
BstV1I	GCAGC	3 cut(s)	138, 463, 535
BsuRI	GGCC	1 cut(s)	61
BtgI	CCRYGG	1 cut(s)	36
BtsCI	GGATG	2 cut(s)	182, 228
BtsIMutI	CAGTG	2 cut(s)	242, 436
BveI	ACCTGC	1 cut(s)	167
CseI	GACGC	1 cut(s)	346
Csp6I	GTAC	2 cut(s)	351, 510
CviAII	CATG	3 cut(s)	37, 354, 559
CviJI	RGCY	9 cut(s)	5, 14, 41, 61, 129, 145, 153, 410, 548
CviKI_1	RGCY	9 cut(s)	5, 14, 41, 61, 129, 145, 153, 410, 548
CviQI	GTAC	2 cut(s)	351, 510
DdeI	CTNAG	1 cut(s)	403
DpnI	GATC	1 cut(s)	321
DpnII	GATC	1 cut(s)	319
EaeI	YGGCCR	1 cut(s)	59
Eam1104I	CTCTTC	1 cut(s)	24
EarI	CTCTTC	1 cut(s)	24
Eco130I	CCWWGG	3 cut(s)	36, 172, 481
Eco57I	CTGAAG	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	562
EcoT14I	CCWWGG	3 cut(s)	36, 172, 481
ErhI	CCWWGG	3 cut(s)	36, 172, 481
FaeI	CATG	3 cut(s)	40, 357, 562
FaiI	YATR	8 cut(s)	38, 94, 156, 355, 379, 560, 587, 608
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	3 cut(s)	36, 353, 558
Fnu4HI	GCNGC	3 cut(s)	127, 477, 549
FokI	GGATG	2 cut(s)	189, 215
Fsp4HI	GCNGC	3 cut(s)	127, 477, 549
FspBI	CTAG	1 cut(s)	507
GluI	GCNGC	3 cut(s)	127, 477, 549
HaeIII	GGCC	1 cut(s)	61
HgaI	GACGC	1 cut(s)	346
Hin1I	GRCGYC	1 cut(s)	426
Hin1II	CATG	3 cut(s)	40, 357, 562
HinfI	GANTC	2 cut(s)	486, 500
Hpy166II	GTNNAC	3 cut(s)	55, 98, 337
Hpy188III	TCNNGA	4 cut(s)	281, 361, 422, 518
Hpy8I	GTNNAC	3 cut(s)	55, 98, 337
Hpy99I	CGWCG	1 cut(s)	532
HpyAV	CCTTC	2 cut(s)	188, 341
HpyCH4III	ACNGT	4 cut(s)	257, 341, 473, 539
HpyCH4IV	ACGT	1 cut(s)	426
HpyCH4V	TGCA	5 cut(s)	126, 240, 399, 456, 497
HpyF10VI	GCNNNNNNNGC	3 cut(s)	11, 47, 159
HpyF3I	CTNAG	1 cut(s)	403
HpySE526I	ACGT	1 cut(s)	426
Hsp92I	GRCGYC	1 cut(s)	426
Hsp92II	CATG	3 cut(s)	40, 357, 562
Kzo9I	GATC	1 cut(s)	319
Lsp1109I	GCAGC	3 cut(s)	138, 463, 535
LweI	GCATC	1 cut(s)	600
MaeI	CTAG	1 cut(s)	507
MaeII	ACGT	1 cut(s)	426
MalI	GATC	1 cut(s)	321
MboI	GATC	1 cut(s)	319
MboII	GAAGA	2 cut(s)	11, 410
MlsI	TGGCCA	1 cut(s)	61
MluCI	AATT	2 cut(s)	121, 569
MluNI	TGGCCA	1 cut(s)	61
MnlI	CCTC	1 cut(s)	279
Mox20I	TGGCCA	1 cut(s)	61
MscI	TGGCCA	1 cut(s)	61
MseI	TTAA	1 cut(s)	210
Msp20I	TGGCCA	1 cut(s)	61
MspA1I	CMGCKG	1 cut(s)	191
MspCI	CTTAAG	1 cut(s)	209
MspR9I	CCNGG	1 cut(s)	564
Mva1269I	GAATGC	1 cut(s)	458
MvaI	CCWGG	1 cut(s)	564
MwoI	GCNNNNNNNGC	3 cut(s)	11, 47, 159
NcoI	CCATGG	1 cut(s)	36
NdeII	GATC	1 cut(s)	319
NlaIII	CATG	3 cut(s)	40, 357, 562
NspI	RCATGY	1 cut(s)	357
PctI	GAATGC	1 cut(s)	458
PfeI	GAWTC	2 cut(s)	486, 500
PkrI	GCNGC	3 cut(s)	128, 478, 550
Psp6I	CCWGG	1 cut(s)	562
PspGI	CCWGG	1 cut(s)	562
PsrI	GAACNNNNNNTAC	2 cut(s)	356, 388
RsaI	GTAC	2 cut(s)	352, 511
RsaNI	GTAC	2 cut(s)	351, 510
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	3 cut(s)	127, 477, 549
Sau3AI	GATC	1 cut(s)	319
ScaI	AGTACT	1 cut(s)	511
ScrFI	CCNGG	1 cut(s)	564
SfaNI	GCATC	1 cut(s)	600
SfcI	CTRYAG	1 cut(s)	585
SmlI	CTYRAG	1 cut(s)	209
SmoI	CTYRAG	1 cut(s)	209
SpeI	ACTAGT	1 cut(s)	506
Sse9I	AATT	2 cut(s)	121, 569
SsiI	CCGC	1 cut(s)	189
SspMI	CTAG	1 cut(s)	507
StyD4I	CCNGG	1 cut(s)	562
StyI	CCWWGG	3 cut(s)	36, 172, 481
TaaI	ACNGT	4 cut(s)	257, 341, 473, 539
TaiI	ACGT	1 cut(s)	429
TaqI	TCGA	2 cut(s)	318, 503
TasI	AATT	2 cut(s)	121, 569
TatI	WGTACW	1 cut(s)	509
TfiI	GAWTC	2 cut(s)	486, 500
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	2 cut(s)	249, 436
TseI	GCWGC	3 cut(s)	126, 476, 548
TspDTI	ATGAA	2 cut(s)	102, 547
TspRI	CASTG	2 cut(s)	249, 436
Vha464I	CTTAAG	1 cut(s)	209
XapI	RAATTY	1 cut(s)	569
XceI	RCATGY	1 cut(s)	357
XspI	CTAG	1 cut(s)	507
ZraI	GACGTC	1 cut(s)	427
ZrmI	AGTACT	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.