RLG00000025660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0006412
Physical Location & Seq
Forward (+)
47413485 .. 47414725
1241 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000025660

Sequence Viewer

Length: 645 bp
ATGGCTTTCTCCAACTCCATGGCCTTTTTAGCTACGGTTCTTGTACTACTACCTATGGCTACTTTTGCTGTGGACTGGCCAGATATATCTCCTACTGCTGCAAAGGAAATATGTAAAGAAGTGGAGTGTGGAAGAGGAACATGCAATTATAACTCCAGTGAGTCATTACTCTATACGTGTGAGTGCGAAACTGGATGGAAGCGAACCGCCGAAGGAAATGATAGTCTCAAGTTTCTCCCTTGTGTCATCCCTGACTGTACCCTGGACTACACCAATTGCCAAGCACCCCCTAAAGTTCCAGATTATACACAACTTCCAAGCAACTTATCTGCATTTGACCCTTGCTACTGGGTTTACTGCGGAGAAGGTACATGCGTAAAGAACTCAACCTATGTGTACACACCGGAGTGTAAATGCAACCCAGGGGCGTCGAATCTTCTCAACGTCACAGTATTCCCATGCTACAGTGAATGCACACTTAAACCCGACTGTGAACGCCTTGGAATCACAGTTGCAAATTCGACTACCAATTCAACTACCTCTTCTGACGGGAATGACAGTAATAAAGCTACCGAATTTATGCCAGGAAAATTCCAGTTGGTGACTATAGTGATGGTTTCTGTGGGTATGATCCTGTGGAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

215

Amino Acids

23.4

Weight (kDa)

4.53

Isoelectric Point (pI)

32.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 150
AciI CCGC 2 cut(s) 207, 360
AclWI GGATC 1 cut(s) 625
AcoI YGGCCR 1 cut(s) 77
AcsI RAATTY 3 cut(s) 517, 575, 590
AcyI GRCGYC 1 cut(s) 428
AfaI GTAC 4 cut(s) 45, 259, 370, 398
AflIII ACRYGT 1 cut(s) 176
AgsI TTSAA 1 cut(s) 534
AjnI CCWGG 3 cut(s) 261, 421, 583
AleI CACNNNNGTG 1 cut(s) 406
AluBI AGCT 2 cut(s) 32, 569
AluI AGCT 2 cut(s) 32, 569
Alw26I GTCTC 1 cut(s) 230
AlwI GGATC 1 cut(s) 625
AoxI GGCC 2 cut(s) 21, 77
ApeKI GCWGC 1 cut(s) 98
ApoI RAATTY 3 cut(s) 517, 575, 590
AsuHPI GGTGA 1 cut(s) 613
BaeI ACNNNNGTAYC 2 cut(s) 360, 393
BalI TGGCCA 1 cut(s) 79
BbvI GCAGC 1 cut(s) 85
BccI CCATC 2 cut(s) 189, 607
BciT130I CCWGG 3 cut(s) 263, 423, 585
BcoDI GTCTC 1 cut(s) 230
BfmI CTRYAG 2 cut(s) 463, 606
BisI GCNGC 1 cut(s) 99
BlsI GCNGC 1 cut(s) 100
Bme1390I CCNGG 3 cut(s) 263, 423, 585
BmrFI CCNGG 3 cut(s) 263, 423, 585
BmrI ACTGGG 1 cut(s) 358
BmuI ACTGGG 1 cut(s) 358
BpmI CTGGAG 1 cut(s) 139
BpuEI CTTGAG 1 cut(s) 212
BsaAI YACGTR 1 cut(s) 177
BsaHI GRCGYC 1 cut(s) 428
BsaJI CCNNGG 5 cut(s) 18, 261, 421, 422, 499
BsaWI WCCGGW 1 cut(s) 403
Bse1I ACTGG 5 cut(s) 80, 156, 196, 353, 595
BseBI CCWGG 3 cut(s) 263, 423, 585
BseDI CCNNGG 5 cut(s) 18, 261, 421, 422, 499
BseGI GGATG 2 cut(s) 200, 246
BseNI ACTGG 5 cut(s) 80, 156, 196, 353, 595
BseXI GCAGC 1 cut(s) 85
BshFI GGCC 2 cut(s) 23, 79
BsiSI CCGG 1 cut(s) 404
BsmAI GTCTC 1 cut(s) 230
BsmI GAATGC 1 cut(s) 476
BsnI GGCC 2 cut(s) 23, 79
Bsp1407I TGTACA 1 cut(s) 396
Bsp143I GATC 1 cut(s) 630
Bsp19I CCATGG 1 cut(s) 18
BspACI CCGC 2 cut(s) 207, 360
BspANI GGCC 2 cut(s) 23, 79
BspPI GGATC 1 cut(s) 625
BsrGI TGTACA 1 cut(s) 396
BsrI ACTGG 5 cut(s) 80, 156, 196, 353, 595
BssECI CCNNGG 5 cut(s) 18, 261, 421, 422, 499
BssMI GATC 1 cut(s) 630
BssNI GRCGYC 1 cut(s) 428
BssT1I CCWWGG 2 cut(s) 18, 499
Bst2UI CCWGG 3 cut(s) 263, 423, 585
Bst4CI ACNGT 7 cut(s) 37, 257, 451, 467, 491, 511, 560
Bst6I CTCTTC 2 cut(s) 127, 547
BstACI GRCGYC 1 cut(s) 428
BstAUI TGTACA 1 cut(s) 396
BstBAI YACGTR 1 cut(s) 177
BstDSI CCRYGG 1 cut(s) 18
BstF5I GGATG 2 cut(s) 200, 246
BstKTI GATC 1 cut(s) 633
BstMAI GTCTC 1 cut(s) 230
BstMBI GATC 1 cut(s) 630
BstMWI GCNNNNNNNGC 2 cut(s) 29, 65
BstNI CCWGG 3 cut(s) 263, 423, 585
BstNSI RCATGY 2 cut(s) 144, 375
BstSCI CCNGG 3 cut(s) 261, 421, 583
BstSFI CTRYAG 2 cut(s) 463, 606
BstV1I GCAGC 1 cut(s) 85
BstXI CCANNNNNNTGG 1 cut(s) 19
BsuRI GGCC 2 cut(s) 23, 79
BtgI CCRYGG 1 cut(s) 18
BtsCI GGATG 2 cut(s) 200, 246
BtsIMutI CAGTG 2 cut(s) 163, 472
CseI GACGC 1 cut(s) 417
Csp6I GTAC 4 cut(s) 44, 258, 369, 397
CviAII CATG 4 cut(s) 19, 141, 372, 459
CviJI RGCY 6 cut(s) 5, 23, 32, 59, 79, 569
CviKI_1 RGCY 6 cut(s) 5, 23, 32, 59, 79, 569
CviQI GTAC 4 cut(s) 44, 258, 369, 397
DpnI GATC 1 cut(s) 632
DpnII GATC 1 cut(s) 630
EaeI YGGCCR 1 cut(s) 77
Eam1104I CTCTTC 2 cut(s) 127, 547
EarI CTCTTC 2 cut(s) 127, 547
Eco130I CCWWGG 2 cut(s) 18, 499
EcoRII CCWGG 3 cut(s) 261, 421, 583
EcoT14I CCWWGG 2 cut(s) 18, 499
ErhI CCWWGG 2 cut(s) 18, 499
FaeI CATG 4 cut(s) 22, 144, 375, 462
FatI CATG 4 cut(s) 18, 140, 371, 458
Fnu4HI GCNGC 1 cut(s) 99
FokI GGATG 2 cut(s) 207, 233
Fsp4HI GCNGC 1 cut(s) 99
GluI GCNGC 1 cut(s) 99
GsuI CTGGAG 1 cut(s) 139
HaeIII GGCC 2 cut(s) 23, 79
HapII CCGG 1 cut(s) 404
HgaI GACGC 1 cut(s) 417
Hin1I GRCGYC 1 cut(s) 428
Hin1II CATG 4 cut(s) 22, 144, 375, 462
HinfI GANTC 3 cut(s) 161, 433, 504
HpaII CCGG 1 cut(s) 404
HphI GGTGA 1 cut(s) 613
Hpy166II GTNNAC 5 cut(s) 73, 355, 397, 399, 494
Hpy188I TCNGA 1 cut(s) 547
Hpy188III TCNNGA 1 cut(s) 299
Hpy8I GTNNAC 5 cut(s) 73, 355, 397, 399, 494
Hpy99I CGWCG 1 cut(s) 433
HpyAV CCTTC 2 cut(s) 206, 359
HpyCH4III ACNGT 7 cut(s) 37, 257, 451, 467, 491, 511, 560
HpyCH4IV ACGT 2 cut(s) 176, 444
HpyCH4V TGCA 6 cut(s) 101, 144, 332, 417, 474, 515
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 65
HpySE526I ACGT 2 cut(s) 176, 444
Hsp92I GRCGYC 1 cut(s) 428
Hsp92II CATG 4 cut(s) 22, 144, 375, 462
Kzo9I GATC 1 cut(s) 630
Lsp1109I GCAGC 1 cut(s) 85
MaeII ACGT 2 cut(s) 176, 444
MaeIII GTNAC 2 cut(s) 445, 601
MalI GATC 1 cut(s) 632
MboI GATC 1 cut(s) 630
MboII GAAGA 3 cut(s) 144, 428, 534
MfeI CAATTG 1 cut(s) 274
MlsI TGGCCA 1 cut(s) 79
MluCI AATT 6 cut(s) 145, 274, 517, 529, 575, 590
MluNI TGGCCA 1 cut(s) 79
MlyI GAGTC 1 cut(s) 170
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 2 cut(s) 128, 550
Mox20I TGGCCA 1 cut(s) 79
MscI TGGCCA 1 cut(s) 79
MseI TTAA 1 cut(s) 480
MslI CAYNNNNRTG 1 cut(s) 406
Msp20I TGGCCA 1 cut(s) 79
MspI CCGG 1 cut(s) 404
MspR9I CCNGG 3 cut(s) 263, 423, 585
MunI CAATTG 1 cut(s) 274
Mva1269I GAATGC 1 cut(s) 476
MvaI CCWGG 3 cut(s) 263, 423, 585
MwoI GCNNNNNNNGC 2 cut(s) 29, 65
NcoI CCATGG 1 cut(s) 18
NdeII GATC 1 cut(s) 630
NlaIII CATG 4 cut(s) 22, 144, 375, 462
NmuCI GTSAC 2 cut(s) 445, 601
NspI RCATGY 2 cut(s) 144, 375
OliI CACNNNNGTG 1 cut(s) 406
PasI CCCWGGG 1 cut(s) 422
PctI GAATGC 1 cut(s) 476
PfeI GAWTC 2 cut(s) 433, 504
PkrI GCNGC 1 cut(s) 100
PleI GAGTC 1 cut(s) 169
PpsI GAGTC 1 cut(s) 169
Ppu21I YACGTR 1 cut(s) 177
PsiI TTATAA 1 cut(s) 150
Psp6I CCWGG 3 cut(s) 261, 421, 583
PspGI CCWGG 3 cut(s) 261, 421, 583
RsaI GTAC 4 cut(s) 45, 259, 370, 398
RsaNI GTAC 4 cut(s) 44, 258, 369, 397
RseI CAYNNNNRTG 1 cut(s) 406
SaqAI TTAA 1 cut(s) 480
SatI GCNGC 1 cut(s) 99
Sau3AI GATC 1 cut(s) 630
SchI GAGTC 1 cut(s) 170
ScrFI CCNGG 3 cut(s) 263, 423, 585
SetI ASST 8 cut(s) 34, 55, 179, 370, 392, 447, 542, 571
SfcI CTRYAG 2 cut(s) 463, 606
SmiMI CAYNNNNRTG 1 cut(s) 406
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
Sse9I AATT 6 cut(s) 145, 274, 517, 529, 575, 590
SsiI CCGC 2 cut(s) 207, 360
StyD4I CCNGG 3 cut(s) 261, 421, 583
StyI CCWWGG 2 cut(s) 18, 499
TaaI ACNGT 7 cut(s) 37, 257, 451, 467, 491, 511, 560
TaiI ACGT 2 cut(s) 179, 447
TaqI TCGA 2 cut(s) 431, 521
TasI AATT 6 cut(s) 145, 274, 517, 529, 575, 590
TatI WGTACW 2 cut(s) 43, 396
TfiI GAWTC 2 cut(s) 433, 504
Tru1I TTAA 1 cut(s) 480
Tru9I TTAA 1 cut(s) 480
TscAI CASTG 2 cut(s) 163, 472
TseFI GTSAC 2 cut(s) 445, 601
TseI GCWGC 1 cut(s) 98
Tsp45I GTSAC 2 cut(s) 445, 601
TspRI CASTG 2 cut(s) 163, 472
XapI RAATTY 3 cut(s) 517, 575, 590
XceI RCATGY 2 cut(s) 144, 375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.