Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006412

Physical Location & Seq

Genomic Coordinates Reverse (-)

49183740 .. 49185590

Gene Structure 1851 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00428850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGGCTTTCTCTAAATCCATGGCTTTGTTAGCTACTCTTCTTGTTCTGCTACCCATGGCTACTTACGCTGTGGACTGGCCCGATATTTCTCCTGCTATTGCCGATGAAATATGTAAACAAGTTGAGTGTGGAAAAGGAAATTGCAGCTTCAACGTCAGTGAGCCATTAGGCTATACCTGCGAGTGCGACCAAGGATGGAAGCGAACCGCTGAAGGCAACGATAATCTCAAGTTTCTCCCTTGTGTCATCCCTAACTGCACACTGGATTACGACGGTTGCCAAAAACCCCCTCCAGTTCCTGATTACACAGAAGTCCCACGCAACTTATCTGCCTTTGATCCTTGCACCTGGGTTTACTGTGGAGAAGGTTCATGCGTCAAGAACGCTACCTATCTATACACACCAGAGTGTAAATGCAACTCAGGGGCTTCTAATCTTCTTGACATCAGTGTATTCCCCTGCTACAAAGAATGCACCCTTCAACCTGACTGTGCTGCCCTTGGAATCAAAGTTGCAAATTCGACTAGTACCTCTCCCGATGGAACGAGTGACAGTAAAGCTACCGACTTCATGCCAGGCAAATTCCAGTTGATGACTATAGTGATGGTGTCTGTGGGTATGATGCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

209

Amino Acids

22.6

Weight (kDa)

4.42

Isoelectric Point (pI)

40.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006412)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g03170 FvH4_6g03180
malus_domestica	MD04G1222300.v1.1 MD04G1222400.v1.1 MD12G1238500.v1.1
prunus_persica	Prupe.6G341400_v2.0.a1
pyrus_communis	pycom04g19670 pycom12g21920
rosa_chinensis	RchiOBHm_Chr3g0451431 RchiOBHm_Chr3g0451451
rosa_laevigata	RLG00000025659 RLG00000025660
rosa_multiflora	Rmu_sc0002575.1_g000001 Rmu_sc0009360.1_g000055 Rmu_sc0021369.1_g000004 Rmu_ssc0000091.1_g000020
rosa_roxburghii	Rroxscaffold_164G00436480 Rroxscaffold_6G00428850
rosa_rugosa	Rorug02G0633900
rosa_samantha	Rh3AG036800 Rh3AG036900 Rh3BG037400 Rh3CG036000 Rh3DG036900 Rh3DG037000
rosa_wichuraiana	Rw3G002720 Rw3G002730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	185
AciI	CCGC	1 cut(s)	207
AclWI	GGATC	1 cut(s)	332
AcsI	RAATTY	2 cut(s)	517, 581
AcuI	CTGAAG	1 cut(s)	231
AfaI	GTAC	1 cut(s)	529
AgsI	TTSAA	2 cut(s)	151, 482
AhlI	ACTAGT	1 cut(s)	524
AjnI	CCWGG	2 cut(s)	347, 574
AleI	CACNNNNGTG	1 cut(s)	406
AluBI	AGCT	3 cut(s)	32, 147, 560
AluI	AGCT	3 cut(s)	32, 147, 560
AlwI	GGATC	1 cut(s)	332
AlwNI	CAGNNNCTG	1 cut(s)	299
AoxI	GGCC	1 cut(s)	77
ApeKI	GCWGC	2 cut(s)	144, 494
ApoI	RAATTY	2 cut(s)	517, 581
AspS9I	GGNCC	1 cut(s)	78
BbvI	GCAGC	2 cut(s)	156, 481
BccI	CCATC	3 cut(s)	189, 533, 598
BciT130I	CCWGG	2 cut(s)	349, 576
BcuI	ACTAGT	1 cut(s)	524
BfaI	CTAG	1 cut(s)	525
BfmI	CTRYAG	2 cut(s)	597, 626
BfuAI	ACCTGC	1 cut(s)	185
BisI	GCNGC	2 cut(s)	145, 495
BlsI	GCNGC	2 cut(s)	146, 496
Bme1390I	CCNGG	2 cut(s)	349, 576
BmgT120I	GGNCC	1 cut(s)	78
BmrFI	CCNGG	2 cut(s)	349, 576
BmsI	GCATC	1 cut(s)	612
BpmI	CTGGAG	1 cut(s)	276
BpuEI	CTTGAG	1 cut(s)	212
BsaJI	CCNNGG	5 cut(s)	18, 54, 190, 348, 499
Bse1I	ACTGG	4 cut(s)	80, 267, 293, 586
BseBI	CCWGG	2 cut(s)	349, 576
BseDI	CCNNGG	5 cut(s)	18, 54, 190, 348, 499
BseGI	GGATG	2 cut(s)	200, 246
BseMII	CTCAG	1 cut(s)	435
BseNI	ACTGG	4 cut(s)	80, 267, 293, 586
BseXI	GCAGC	2 cut(s)	156, 481
BsgI	GTGCAG	1 cut(s)	241
BshFI	GGCC	1 cut(s)	79
BslFI	GGGAC	1 cut(s)	299
BsmFI	GGGAC	1 cut(s)	299
BsmI	GAATGC	1 cut(s)	476
BsnI	GGCC	1 cut(s)	79
Bsp143I	GATC	1 cut(s)	337
Bsp19I	CCATGG	2 cut(s)	18, 54
BspACI	CCGC	1 cut(s)	207
BspANI	GGCC	1 cut(s)	79
BspCNI	CTCAG	1 cut(s)	434
BspMI	ACCTGC	1 cut(s)	185
BspPI	GGATC	1 cut(s)	332
BsrI	ACTGG	4 cut(s)	80, 267, 293, 586
BssECI	CCNNGG	5 cut(s)	18, 54, 190, 348, 499
BssMI	GATC	1 cut(s)	337
BssT1I	CCWWGG	4 cut(s)	18, 54, 190, 499
Bst2UI	CCWGG	2 cut(s)	349, 576
Bst4CI	ACNGT	4 cut(s)	275, 359, 491, 554
Bst6I	CTCTTC	1 cut(s)	42
BstDEI	CTNAG	1 cut(s)	421
BstDSI	CCRYGG	2 cut(s)	18, 54
BstF5I	GGATG	2 cut(s)	200, 246
BstKTI	GATC	1 cut(s)	340
BstMBI	GATC	1 cut(s)	337
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 65, 177
BstNI	CCWGG	2 cut(s)	349, 576
BstSCI	CCNGG	2 cut(s)	347, 574
BstSFI	CTRYAG	2 cut(s)	597, 626
BstV1I	GCAGC	2 cut(s)	156, 481
BsuRI	GGCC	1 cut(s)	79
BtgI	CCRYGG	2 cut(s)	18, 54
BtsCI	GGATG	2 cut(s)	200, 246
BtsIMutI	CAGTG	3 cut(s)	163, 260, 454
BveI	ACCTGC	1 cut(s)	185
CaiI	CAGNNNCTG	1 cut(s)	299
Cfr13I	GGNCC	1 cut(s)	78
CseI	GACGC	1 cut(s)	364
Csp6I	GTAC	1 cut(s)	528
CviAII	CATG	4 cut(s)	19, 55, 372, 571
CviQI	GTAC	1 cut(s)	528
DdeI	CTNAG	1 cut(s)	421
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
Eam1104I	CTCTTC	1 cut(s)	42
EarI	CTCTTC	1 cut(s)	42
Eco130I	CCWWGG	4 cut(s)	18, 54, 190, 499
Eco57I	CTGAAG	1 cut(s)	231
EcoRII	CCWGG	2 cut(s)	347, 574
EcoT14I	CCWWGG	4 cut(s)	18, 54, 190, 499
ErhI	CCWWGG	4 cut(s)	18, 54, 190, 499
FaeI	CATG	4 cut(s)	22, 58, 375, 574
FaiI	YATR	9 cut(s)	20, 56, 112, 174, 373, 397, 572, 599, 620
FaqI	GGGAC	1 cut(s)	299
FatI	CATG	4 cut(s)	18, 54, 371, 570
Fnu4HI	GCNGC	2 cut(s)	145, 495
FokI	GGATG	2 cut(s)	207, 233
Fsp4HI	GCNGC	2 cut(s)	145, 495
FspBI	CTAG	1 cut(s)	525
GluI	GCNGC	2 cut(s)	145, 495
GsuI	CTGGAG	1 cut(s)	276
HaeIII	GGCC	1 cut(s)	79
HgaI	GACGC	1 cut(s)	364
Hin1II	CATG	4 cut(s)	22, 58, 375, 574
HinfI	GANTC	1 cut(s)	504
Hpy166II	GTNNAC	3 cut(s)	73, 116, 355
Hpy188III	TCNNGA	4 cut(s)	299, 379, 440, 536
Hpy8I	GTNNAC	3 cut(s)	73, 116, 355
Hpy99I	CGWCG	1 cut(s)	275
HpyAV	CCTTC	3 cut(s)	206, 359, 488
HpyCH4III	ACNGT	4 cut(s)	275, 359, 491, 554
HpyCH4IV	ACGT	1 cut(s)	153
HpyCH4V	TGCA	6 cut(s)	144, 258, 345, 417, 474, 515
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 65, 177
HpyF3I	CTNAG	1 cut(s)	421
HpySE526I	ACGT	1 cut(s)	153
Hsp92II	CATG	4 cut(s)	22, 58, 375, 574
Kzo9I	GATC	1 cut(s)	337
Lsp1109I	GCAGC	2 cut(s)	156, 481
LweI	GCATC	1 cut(s)	612
MaeI	CTAG	1 cut(s)	525
MaeII	ACGT	1 cut(s)	153
MaeIII	GTNAC	1 cut(s)	548
MalI	GATC	1 cut(s)	339
MboI	GATC	1 cut(s)	337
MboII	GAAGA	2 cut(s)	29, 428
MluCI	AATT	3 cut(s)	139, 517, 581
MnlI	CCTC	2 cut(s)	300, 541
MslI	CAYNNNNRTG	1 cut(s)	406
MspA1I	CMGCKG	1 cut(s)	209
MspR9I	CCNGG	2 cut(s)	349, 576
Mva1269I	GAATGC	1 cut(s)	476
MvaI	CCWGG	2 cut(s)	349, 576
MwoI	GCNNNNNNNGC	3 cut(s)	29, 65, 177
NcoI	CCATGG	2 cut(s)	18, 54
NdeII	GATC	1 cut(s)	337
NlaIII	CATG	4 cut(s)	22, 58, 375, 574
NmuCI	GTSAC	1 cut(s)	548
OliI	CACNNNNGTG	1 cut(s)	406
PctI	GAATGC	1 cut(s)	476
PfeI	GAWTC	1 cut(s)	504
PkrI	GCNGC	2 cut(s)	146, 496
Psp6I	CCWGG	2 cut(s)	347, 574
PspGI	CCWGG	2 cut(s)	347, 574
PspPI	GGNCC	1 cut(s)	78
PstNI	CAGNNNCTG	1 cut(s)	299
RsaI	GTAC	1 cut(s)	529
RsaNI	GTAC	1 cut(s)	528
RseI	CAYNNNNRTG	1 cut(s)	406
SatI	GCNGC	2 cut(s)	145, 495
Sau3AI	GATC	1 cut(s)	337
Sau96I	GGNCC	1 cut(s)	78
ScrFI	CCNGG	2 cut(s)	349, 576
SfaNI	GCATC	1 cut(s)	612
SfcI	CTRYAG	2 cut(s)	597, 626
SmiMI	CAYNNNNRTG	1 cut(s)	406
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
SpeI	ACTAGT	1 cut(s)	524
Sse9I	AATT	3 cut(s)	139, 517, 581
SsiI	CCGC	1 cut(s)	207
SspMI	CTAG	1 cut(s)	525
StyD4I	CCNGG	2 cut(s)	347, 574
StyI	CCWWGG	4 cut(s)	18, 54, 190, 499
TaaI	ACNGT	4 cut(s)	275, 359, 491, 554
TaiI	ACGT	1 cut(s)	156
TaqI	TCGA	1 cut(s)	521
TasI	AATT	3 cut(s)	139, 517, 581
TfiI	GAWTC	1 cut(s)	504
TscAI	CASTG	3 cut(s)	163, 267, 454
TseFI	GTSAC	1 cut(s)	548
TseI	GCWGC	2 cut(s)	144, 494
Tsp45I	GTSAC	1 cut(s)	548
TspDTI	ATGAA	3 cut(s)	120, 360, 559
TspRI	CASTG	3 cut(s)	163, 267, 454
XapI	RAATTY	2 cut(s)	517, 581
XspI	CTAG	1 cut(s)	525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.