Rw3G002730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0006412
Physical Location & Seq
Reverse (-)
2366638 .. 2368503
1866 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G002730.1

Sequence Viewer

Length: 636 bp
ATGGCTTTCTCTAAATCCATGGCCTTGTTATCTACTCTTCTTGTTCTGCTACCCATGGCTACTTACGCTGTGGACTGGCCGGATATTTCTCCTTCCATTGCCGCTGAAGTATGTAAACAAGTTGATTGTGGAAAAGGAACTTGCAGCTTCAACACCAGTGAACCATTAGCCTATACCTGCGAGTGCGAGAAAGGATGGAAGCGAACCGCTGAAGGCAACGATAATCTTAAGTTTCTCCCTTGTGTCATCCCTAACTGCACACTGGACTACAACGGTTGCCAAGCTCCCCCTAAAGTTCCTGATTACACAGAAGTCCCACGCAACTTATCTGCATTTGATCCTTGCTACTGGGTTTACTGTGGAGAAGGTACATGCGTCAAGAACTCTACCTATCTATACACACCAGAGTGTAAATGCAACTCAGGGGCTTCTAACCTTCTTGGCATCAGTGTATACCCCTGCTACAATCAATGCACACTTCAACCTGACTGTGCTGCCCTTGGAATCAAAGTTTCAAATTCGACTAGTACCTCTCCCAGTGGAACGTCGACTAACAGTAACAAAGCTACCGACTTCATGCCAGGCAAATTCCAGTTGATGACTATAGTGATGGTGTCTGTGGGTATGATGCTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

211

Amino Acids

22.79

Weight (kDa)

4.94

Isoelectric Point (pI)

26.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 185
AccI GTMKAC 2 cut(s) 453, 548
AciI CCGC 2 cut(s) 102, 207
AclWI GGATC 1 cut(s) 332
AcoI YGGCCR 1 cut(s) 77
AcsI RAATTY 2 cut(s) 517, 587
AcuI CTGAAG 2 cut(s) 126, 231
AfaI GTAC 2 cut(s) 370, 529
AflII CTTAAG 1 cut(s) 227
AgsI TTSAA 3 cut(s) 151, 482, 516
AhlI ACTAGT 1 cut(s) 524
AjnI CCWGG 1 cut(s) 580
AleI CACNNNNGTG 1 cut(s) 406
AluBI AGCT 3 cut(s) 147, 284, 566
AluI AGCT 3 cut(s) 147, 284, 566
AlwI GGATC 1 cut(s) 332
AoxI GGCC 2 cut(s) 21, 77
ApeKI GCWGC 2 cut(s) 144, 494
ApoI RAATTY 2 cut(s) 517, 587
BaeI ACNNNNGTAYC 2 cut(s) 360, 393
BbvI GCAGC 2 cut(s) 156, 481
BccI CCATC 2 cut(s) 189, 604
BciT130I CCWGG 1 cut(s) 582
BcuI ACTAGT 1 cut(s) 524
BfaI CTAG 1 cut(s) 525
BfmI CTRYAG 1 cut(s) 603
BfrI CTTAAG 1 cut(s) 227
BfuAI ACCTGC 1 cut(s) 185
BisI GCNGC 3 cut(s) 102, 145, 495
BlsI GCNGC 3 cut(s) 103, 146, 496
Bme1390I CCNGG 1 cut(s) 582
BmrFI CCNGG 1 cut(s) 582
BmrI ACTGGG 2 cut(s) 358, 531
BmsI GCATC 2 cut(s) 453, 618
BmuI ACTGGG 2 cut(s) 358, 531
BsaJI CCNNGG 3 cut(s) 18, 54, 499
Bse1I ACTGG 6 cut(s) 80, 156, 267, 353, 537, 592
Bse3DI GCAATG 1 cut(s) 96
BseBI CCWGG 1 cut(s) 582
BseDI CCNNGG 3 cut(s) 18, 54, 499
BseGI GGATG 2 cut(s) 200, 246
BseMI GCAATG 1 cut(s) 96
BseMII CTCAG 1 cut(s) 435
BseNI ACTGG 6 cut(s) 80, 156, 267, 353, 537, 592
BseXI GCAGC 2 cut(s) 156, 481
BsgI GTGCAG 1 cut(s) 241
BshFI GGCC 2 cut(s) 23, 79
BsiSI CCGG 1 cut(s) 80
BslFI GGGAC 1 cut(s) 299
BsmFI GGGAC 1 cut(s) 299
BsnI GGCC 2 cut(s) 23, 79
Bsp143I GATC 1 cut(s) 337
Bsp19I CCATGG 2 cut(s) 18, 54
BspACI CCGC 2 cut(s) 102, 207
BspANI GGCC 2 cut(s) 23, 79
BspCNI CTCAG 1 cut(s) 434
BspMI ACCTGC 1 cut(s) 185
BspPI GGATC 1 cut(s) 332
BspTI CTTAAG 1 cut(s) 227
BsrDI GCAATG 1 cut(s) 96
BsrI ACTGG 6 cut(s) 80, 156, 267, 353, 537, 592
BssECI CCNNGG 3 cut(s) 18, 54, 499
BssMI GATC 1 cut(s) 337
BssNAI GTATAC 1 cut(s) 454
BssT1I CCWWGG 3 cut(s) 18, 54, 499
Bst1107I GTATAC 1 cut(s) 454
Bst2UI CCWGG 1 cut(s) 582
Bst4CI ACNGT 4 cut(s) 275, 359, 491, 557
Bst6I CTCTTC 1 cut(s) 42
BstAFI CTTAAG 1 cut(s) 227
BstDEI CTNAG 1 cut(s) 421
BstDSI CCRYGG 2 cut(s) 18, 54
BstF5I GGATG 2 cut(s) 200, 246
BstKTI GATC 1 cut(s) 340
BstMBI GATC 1 cut(s) 337
BstMWI GCNNNNNNNGC 1 cut(s) 65
BstNI CCWGG 1 cut(s) 582
BstNSI RCATGY 1 cut(s) 375
BstSCI CCNGG 1 cut(s) 580
BstSFI CTRYAG 1 cut(s) 603
BstV1I GCAGC 2 cut(s) 156, 481
BstZ17I GTATAC 1 cut(s) 454
BsuRI GGCC 2 cut(s) 23, 79
BtgI CCRYGG 2 cut(s) 18, 54
BtsCI GGATG 2 cut(s) 200, 246
BtsIMutI CAGTG 4 cut(s) 163, 260, 454, 544
BveI ACCTGC 1 cut(s) 185
CseI GACGC 1 cut(s) 364
Csp6I GTAC 2 cut(s) 369, 528
CviAII CATG 4 cut(s) 19, 55, 372, 577
CviJI RGCY 9 cut(s) 5, 23, 59, 79, 147, 170, 284, 428, 566
CviKI_1 RGCY 9 cut(s) 5, 23, 59, 79, 147, 170, 284, 428, 566
CviQI GTAC 2 cut(s) 369, 528
DdeI CTNAG 1 cut(s) 421
DpnI GATC 1 cut(s) 339
DpnII GATC 1 cut(s) 337
EaeI YGGCCR 1 cut(s) 77
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
Eco130I CCWWGG 3 cut(s) 18, 54, 499
Eco57I CTGAAG 2 cut(s) 126, 231
EcoRII CCWGG 1 cut(s) 580
EcoT14I CCWWGG 3 cut(s) 18, 54, 499
ErhI CCWWGG 3 cut(s) 18, 54, 499
FaeI CATG 4 cut(s) 22, 58, 375, 580
FaqI GGGAC 1 cut(s) 299
FatI CATG 4 cut(s) 18, 54, 371, 576
FblI GTMKAC 2 cut(s) 453, 548
Fnu4HI GCNGC 3 cut(s) 102, 145, 495
FokI GGATG 2 cut(s) 207, 233
Fsp4HI GCNGC 3 cut(s) 102, 145, 495
FspBI CTAG 1 cut(s) 525
GluI GCNGC 3 cut(s) 102, 145, 495
HaeIII GGCC 2 cut(s) 23, 79
HapII CCGG 1 cut(s) 80
HgaI GACGC 1 cut(s) 364
Hin1II CATG 4 cut(s) 22, 58, 375, 580
HincII GTYRAC 1 cut(s) 549
HindII GTYRAC 1 cut(s) 549
HinfI GANTC 1 cut(s) 504
HpaII CCGG 1 cut(s) 80
Hpy166II GTNNAC 6 cut(s) 73, 116, 161, 355, 454, 549
Hpy188III TCNNGA 2 cut(s) 299, 379
Hpy8I GTNNAC 6 cut(s) 73, 116, 161, 355, 454, 549
Hpy99I CGWCG 1 cut(s) 550
HpyAV CCTTC 4 cut(s) 102, 206, 359, 446
HpyCH4III ACNGT 4 cut(s) 275, 359, 491, 557
HpyCH4IV ACGT 1 cut(s) 545
HpyCH4V TGCA 5 cut(s) 144, 258, 332, 417, 474
HpyF10VI GCNNNNNNNGC 1 cut(s) 65
HpyF3I CTNAG 1 cut(s) 421
HpySE526I ACGT 1 cut(s) 545
Hsp92II CATG 4 cut(s) 22, 58, 375, 580
Kzo9I GATC 1 cut(s) 337
LmnI GCTCC 1 cut(s) 289
Lsp1109I GCAGC 2 cut(s) 156, 481
LweI GCATC 2 cut(s) 453, 618
MaeI CTAG 1 cut(s) 525
MaeII ACGT 1 cut(s) 545
MaeIII GTNAC 1 cut(s) 557
MalI GATC 1 cut(s) 339
MboI GATC 1 cut(s) 337
MboII GAAGA 1 cut(s) 29
MluCI AATT 2 cut(s) 517, 587
MnlI CCTC 1 cut(s) 541
MseI TTAA 1 cut(s) 228
MslI CAYNNNNRTG 1 cut(s) 406
MspA1I CMGCKG 2 cut(s) 104, 209
MspCI CTTAAG 1 cut(s) 227
MspI CCGG 1 cut(s) 80
MspR9I CCNGG 1 cut(s) 582
MvaI CCWGG 1 cut(s) 582
MwoI GCNNNNNNNGC 1 cut(s) 65
NcoI CCATGG 2 cut(s) 18, 54
NdeII GATC 1 cut(s) 337
NlaIII CATG 4 cut(s) 22, 58, 375, 580
NspI RCATGY 1 cut(s) 375
OliI CACNNNNGTG 1 cut(s) 406
PfeI GAWTC 1 cut(s) 504
PkrI GCNGC 3 cut(s) 103, 146, 496
Psp6I CCWGG 1 cut(s) 580
PspGI CCWGG 1 cut(s) 580
RsaI GTAC 2 cut(s) 370, 529
RsaNI GTAC 2 cut(s) 369, 528
RseI CAYNNNNRTG 1 cut(s) 406
SalI GTCGAC 1 cut(s) 547
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 3 cut(s) 102, 145, 495
Sau3AI GATC 1 cut(s) 337
ScrFI CCNGG 1 cut(s) 582
SfaNI GCATC 2 cut(s) 453, 618
SfcI CTRYAG 1 cut(s) 603
SmiMI CAYNNNNRTG 1 cut(s) 406
SmlI CTYRAG 1 cut(s) 227
SmoI CTYRAG 1 cut(s) 227
SpeI ACTAGT 1 cut(s) 524
Sse9I AATT 2 cut(s) 517, 587
SsiI CCGC 2 cut(s) 102, 207
SspMI CTAG 1 cut(s) 525
StyD4I CCNGG 1 cut(s) 580
StyI CCWWGG 3 cut(s) 18, 54, 499
TaaI ACNGT 4 cut(s) 275, 359, 491, 557
TaiI ACGT 1 cut(s) 548
TaqI TCGA 2 cut(s) 521, 548
TasI AATT 2 cut(s) 517, 587
TauI GCSGC 1 cut(s) 104
TfiI GAWTC 1 cut(s) 504
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TscAI CASTG 4 cut(s) 163, 267, 454, 544
TseI GCWGC 2 cut(s) 144, 494
TspDTI ATGAA 1 cut(s) 565
TspRI CASTG 4 cut(s) 163, 267, 454, 544
Vha464I CTTAAG 1 cut(s) 227
XapI RAATTY 2 cut(s) 517, 587
XceI RCATGY 1 cut(s) 375
XmiI GTMKAC 2 cut(s) 453, 548
XspI CTAG 1 cut(s) 525
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.