Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr04

Orthogroup ID

OG0006412

Physical Location & Seq

Genomic Coordinates Forward (+)

30322367 .. 30325055

Gene Structure 2689 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD04G1222300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCTTTCTCTAAGTCCATAGCCTTTTTAGCTGTGCTTCTGGTAGCGCTGCCCATCGCTGCTTTCGCGGACTGGCCGTATAACTTAGCTCCTACTATTGCCGCTCAAATATGTGATCAAGTTGAGTGTGGAAAGGGAACATGCAAATTTGATATAAACGAACCATTAGGTTTCACGTGCGAGTGCGACCCTAACTGGAAGCGAACGCGTGATGGTGACGATGATTTGAAGTTTCTCCCCTGTGTCATCCCCAACTGCACACTGAACTACAACTGCCAGCCCGCTCCACCTCCAGTTCCTCAGAAAGAAGTCCCTCGCAATTTGTCTGCCTTTGAACCTTGTTACTGGGCTTACTGCGGAGAAGGTAACTGCGTAAGGAACAGTACATACCATTACACCCCCATCTGTGAATGCAACTCCGGCGCCACTAATCTTCTCAATGTCACATTATTCCCCTGCTACAATCAATGCACGCTTCAGAGTGACTGTGCGAGCCTTGGAATCAAGGTTGCAAACTCAAATTCCTCCACTAGCCCTGGGAGCACCACTAACTCTGGGAGTGACAATAGTCAAGCTACGTCGTTTTTGCCCGGAAAGTTCCAGTTGATGGCTGTAGCGATGGTGTCTGTGGGTCTGATTCTGAGGAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

217

Amino Acids

23.36

Weight (kDa)

5.1

Isoelectric Point (pI)

38.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006412)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g03170 FvH4_6g03180
malus_domestica	MD04G1222300.v1.1 MD04G1222400.v1.1 MD12G1238500.v1.1
prunus_persica	Prupe.6G341400_v2.0.a1
pyrus_communis	pycom04g19670 pycom12g21920
rosa_chinensis	RchiOBHm_Chr3g0451431 RchiOBHm_Chr3g0451451
rosa_laevigata	RLG00000025659 RLG00000025660
rosa_multiflora	Rmu_sc0002575.1_g000001 Rmu_sc0009360.1_g000055 Rmu_sc0021369.1_g000004 Rmu_ssc0000091.1_g000020
rosa_roxburghii	Rroxscaffold_164G00436480 Rroxscaffold_6G00428850
rosa_rugosa	Rorug02G0633900
rosa_samantha	Rh3AG036800 Rh3AG036900 Rh3BG037400 Rh3CG036000 Rh3DG036900 Rh3DG037000
rosa_wichuraiana	Rw3G002720 Rw3G002730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	422
AccB7I	CCANNNNNTGG	1 cut(s)	607
AccBSI	CCGCTC	2 cut(s)	104, 284
AccII	CGCG	2 cut(s)	68, 208
AciI	CCGC	4 cut(s)	68, 102, 282, 357
AcoI	YGGCCR	1 cut(s)	74
AcsI	RAATTY	2 cut(s)	146, 520
AcuI	CTGAAG	1 cut(s)	461
AcvI	CACGTG	1 cut(s)	177
AcyI	GRCGYC	1 cut(s)	423
AfaI	GTAC	1 cut(s)	385
AfeI	AGCGCT	1 cut(s)	48
AfiI	CCNNNNNNNGG	1 cut(s)	607
AflIII	ACRYGT	1 cut(s)	206
AgsI	TTSAA	2 cut(s)	229, 335
AjnI	CCWGG	1 cut(s)	535
AluBI	AGCT	3 cut(s)	32, 89, 575
AluI	AGCT	3 cut(s)	32, 89, 575
Alw21I	GWGCWC	1 cut(s)	545
Aor51HI	AGCGCT	1 cut(s)	48
AoxI	GGCC	1 cut(s)	74
ApeKI	GCWGC	2 cut(s)	49, 59
ApoI	RAATTY	2 cut(s)	146, 520
AspLEI	GCGC	2 cut(s)	49, 425
AsuC2I	CCSGG	1 cut(s)	591
AsuHPI	GGTGA	1 cut(s)	227
BanI	GGYRCC	1 cut(s)	422
BbrPI	CACGTG	1 cut(s)	177
Bbv12I	GWGCWC	1 cut(s)	545
BbvI	GCAGC	2 cut(s)	36, 46
BccI	CCATC	5 cut(s)	62, 206, 410, 601, 613
BceAI	ACGGC	1 cut(s)	61
BciT130I	CCWGG	1 cut(s)	537
BclI	TGATCA	1 cut(s)	115
BcnI	CCSGG	1 cut(s)	591
BfaI	CTAG	1 cut(s)	531
BfmI	CTRYAG	1 cut(s)	612
BfoI	RGCGCY	2 cut(s)	50, 426
BisI	GCNGC	3 cut(s)	50, 60, 102
BlsI	GCNGC	3 cut(s)	51, 61, 103
Bme1390I	CCNGG	2 cut(s)	537, 591
BmiI	GGNNCC	1 cut(s)	424
BmrFI	CCNGG	2 cut(s)	537, 591
BmrI	ACTGGG	1 cut(s)	355
BmuI	ACTGGG	1 cut(s)	355
BoxI	GACNNNNGTC	1 cut(s)	567
BpmI	CTGGAG	1 cut(s)	276
BpuMI	CCSGG	1 cut(s)	591
BsaAI	YACGTR	1 cut(s)	177
BsaHI	GRCGYC	1 cut(s)	423
BsaJI	CCNNGG	3 cut(s)	496, 535, 536
Bsc4I	CCNNNNNNNGG	1 cut(s)	607
Bse1I	ACTGG	5 cut(s)	77, 200, 293, 350, 601
BseBI	CCWGG	1 cut(s)	537
BseDI	CCNNGG	3 cut(s)	496, 535, 536
BseGI	GGATG	1 cut(s)	246
BseLI	CCNNNNNNNGG	1 cut(s)	607
BseMII	CTCAG	2 cut(s)	314, 632
BseNI	ACTGG	5 cut(s)	77, 200, 293, 350, 601
BseXI	GCAGC	2 cut(s)	36, 46
BsgI	GTGCAG	1 cut(s)	241
Bsh1236I	CGCG	2 cut(s)	68, 208
BshFI	GGCC	1 cut(s)	76
BshNI	GGYRCC	1 cut(s)	422
BsiHKAI	GWGCWC	1 cut(s)	545
BsiSI	CCGG	2 cut(s)	420, 591
BslFI	GGGAC	1 cut(s)	296
BslI	CCNNNNNNNGG	1 cut(s)	607
BsmFI	GGGAC	1 cut(s)	296
BsmI	GAATGC	1 cut(s)	416
BsnI	GGCC	1 cut(s)	76
Bsp1286I	GDGCHC	1 cut(s)	545
Bsp143I	GATC	1 cut(s)	115
BspACI	CCGC	4 cut(s)	68, 102, 282, 357
BspANI	GGCC	1 cut(s)	76
BspCNI	CTCAG	2 cut(s)	313, 633
BspFNI	CGCG	2 cut(s)	68, 208
BspLI	GGNNCC	1 cut(s)	424
BspT107I	GGYRCC	1 cut(s)	422
BsrBI	CCGCTC	2 cut(s)	104, 284
BsrI	ACTGG	5 cut(s)	77, 200, 293, 350, 601
BssECI	CCNNGG	3 cut(s)	496, 535, 536
BssMI	GATC	1 cut(s)	115
BssNI	GRCGYC	1 cut(s)	423
BssT1I	CCWWGG	1 cut(s)	496
Bst2UI	CCWGG	1 cut(s)	537
Bst4CI	ACNGT	2 cut(s)	383, 488
BstACI	GRCGYC	1 cut(s)	423
BstBAI	YACGTR	1 cut(s)	177
BstC8I	GCNNGC	4 cut(s)	278, 282, 473, 493
BstDEI	CTNAG	4 cut(s)	12, 85, 300, 641
BstF5I	GGATG	1 cut(s)	246
BstFNI	CGCG	2 cut(s)	68, 208
BstH2I	RGCGCY	2 cut(s)	50, 426
BstHHI	GCGC	2 cut(s)	49, 425
BstKTI	GATC	1 cut(s)	118
BstMBI	GATC	1 cut(s)	115
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 65, 420, 540
BstNI	CCWGG	1 cut(s)	537
BstNSI	RCATGY	1 cut(s)	144
BstPAI	GACNNNNGTC	1 cut(s)	567
BstSCI	CCNGG	2 cut(s)	535, 589
BstSFI	CTRYAG	1 cut(s)	612
BstUI	CGCG	2 cut(s)	68, 208
BstV1I	GCAGC	2 cut(s)	36, 46
BsuRI	GGCC	1 cut(s)	76
BtgZI	GCGATG	2 cut(s)	40, 632
BtsCI	GGATG	1 cut(s)	246
BtsIMutI	CAGTG	1 cut(s)	260
Cac8I	GCNNGC	4 cut(s)	278, 282, 473, 493
CfoI	GCGC	2 cut(s)	49, 425
Csp6I	GTAC	1 cut(s)	384
CviAII	CATG	1 cut(s)	141
CviQI	GTAC	1 cut(s)	384
DdeI	CTNAG	4 cut(s)	12, 85, 300, 641
DinI	GGCGCC	1 cut(s)	424
DpnI	GATC	1 cut(s)	117
DpnII	GATC	1 cut(s)	115
EaeI	YGGCCR	1 cut(s)	74
Eco130I	CCWWGG	1 cut(s)	496
Eco47III	AGCGCT	1 cut(s)	48
Eco57I	CTGAAG	1 cut(s)	461
Eco72I	CACGTG	1 cut(s)	177
EcoRII	CCWGG	1 cut(s)	535
EcoT14I	CCWWGG	1 cut(s)	496
EgeI	GGCGCC	1 cut(s)	424
EheI	GGCGCC	1 cut(s)	424
ErhI	CCWWGG	1 cut(s)	496
FaeI	CATG	1 cut(s)	144
FaiI	YATR	6 cut(s)	20, 81, 112, 142, 155, 388
FaqI	GGGAC	1 cut(s)	296
FatI	CATG	1 cut(s)	140
FauI	CCCGC	1 cut(s)	289
FbaI	TGATCA	1 cut(s)	115
Fnu4HI	GCNGC	3 cut(s)	50, 60, 102
FokI	GGATG	1 cut(s)	233
Fsp4HI	GCNGC	3 cut(s)	50, 60, 102
FspBI	CTAG	1 cut(s)	531
GlaI	GCGC	2 cut(s)	48, 424
GluI	GCNGC	3 cut(s)	50, 60, 102
GsuI	CTGGAG	1 cut(s)	276
HaeII	RGCGCY	2 cut(s)	50, 426
HaeIII	GGCC	1 cut(s)	76
HapII	CCGG	2 cut(s)	420, 591
HhaI	GCGC	2 cut(s)	49, 425
Hin1I	GRCGYC	1 cut(s)	423
Hin1II	CATG	1 cut(s)	144
Hin6I	GCGC	2 cut(s)	47, 423
HinP1I	GCGC	2 cut(s)	47, 423
HinfI	GANTC	2 cut(s)	501, 637
HpaII	CCGG	2 cut(s)	420, 591
HphI	GGTGA	1 cut(s)	227
Hpy188I	TCNGA	4 cut(s)	303, 480, 636, 642
Hpy99I	CGWCG	1 cut(s)	583
HpyAV	CCTTC	1 cut(s)	356
HpyCH4III	ACNGT	2 cut(s)	383, 488
HpyCH4IV	ACGT	2 cut(s)	176, 578
HpyCH4V	TGCA	5 cut(s)	144, 258, 414, 471, 512
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 65, 420, 540
HpyF3I	CTNAG	4 cut(s)	12, 85, 300, 641
HpySE526I	ACGT	2 cut(s)	176, 578
Hsp92I	GRCGYC	1 cut(s)	423
Hsp92II	CATG	1 cut(s)	144
HspAI	GCGC	2 cut(s)	47, 423
KasI	GGCGCC	1 cut(s)	422
Ksp22I	TGATCA	1 cut(s)	115
Kzo9I	GATC	1 cut(s)	115
LmnI	GCTCC	3 cut(s)	94, 289, 540
Lsp1109I	GCAGC	2 cut(s)	36, 46
MaeI	CTAG	1 cut(s)	531
MaeII	ACGT	2 cut(s)	176, 578
MaeIII	GTNAC	6 cut(s)	215, 341, 365, 442, 482, 560
MalI	GATC	1 cut(s)	117
MbiI	CCGCTC	2 cut(s)	104, 284
MboI	GATC	1 cut(s)	115
MboII	GAAGA	1 cut(s)	425
MhlI	GDGCHC	1 cut(s)	545
MluCI	AATT	3 cut(s)	146, 319, 520
MluI	ACGCGT	1 cut(s)	206
Mly113I	GGCGCC	1 cut(s)	423
MnlI	CCTC	5 cut(s)	300, 309, 324, 535, 636
MspI	CCGG	2 cut(s)	420, 591
MspR9I	CCNGG	2 cut(s)	537, 591
Mva1269I	GAATGC	1 cut(s)	416
MvaI	CCWGG	1 cut(s)	537
MvnI	CGCG	2 cut(s)	68, 208
MwoI	GCNNNNNNNGC	4 cut(s)	29, 65, 420, 540
NarI	GGCGCC	1 cut(s)	423
NciI	CCSGG	1 cut(s)	591
NdeII	GATC	1 cut(s)	115
NlaIII	CATG	1 cut(s)	144
NlaIV	GGNNCC	1 cut(s)	424
NmuCI	GTSAC	4 cut(s)	215, 442, 482, 560
NspI	RCATGY	1 cut(s)	144
PasI	CCCWGGG	1 cut(s)	536
PctI	GAATGC	1 cut(s)	416
PfeI	GAWTC	2 cut(s)	501, 637
PflMI	CCANNNNNTGG	1 cut(s)	607
PkrI	GCNGC	3 cut(s)	51, 61, 103
PluTI	GGCGCC	1 cut(s)	426
PmaCI	CACGTG	1 cut(s)	177
PmlI	CACGTG	1 cut(s)	177
Ppu21I	YACGTR	1 cut(s)	177
PshAI	GACNNNNGTC	1 cut(s)	567
Psp6I	CCWGG	1 cut(s)	535
PspCI	CACGTG	1 cut(s)	177
PspGI	CCWGG	1 cut(s)	535
PspN4I	GGNNCC	1 cut(s)	424
PsrI	GAACNNNNNNTAC	2 cut(s)	371, 403
RsaI	GTAC	1 cut(s)	385
RsaNI	GTAC	1 cut(s)	384
SatI	GCNGC	3 cut(s)	50, 60, 102
Sau3AI	GATC	1 cut(s)	115
ScrFI	CCNGG	2 cut(s)	537, 591
SduI	GDGCHC	1 cut(s)	545
SfcI	CTRYAG	1 cut(s)	612
SfoI	GGCGCC	1 cut(s)	424
Sse9I	AATT	3 cut(s)	146, 319, 520
SsiI	CCGC	4 cut(s)	68, 102, 282, 357
SspDI	GGCGCC	1 cut(s)	422
SspMI	CTAG	1 cut(s)	531
StyD4I	CCNGG	2 cut(s)	535, 589
StyI	CCWWGG	1 cut(s)	496
TaaI	ACNGT	2 cut(s)	383, 488
TaiI	ACGT	2 cut(s)	179, 581
TasI	AATT	3 cut(s)	146, 319, 520
TatI	WGTACW	1 cut(s)	383
TauI	GCSGC	1 cut(s)	104
TfiI	GAWTC	2 cut(s)	501, 637
TscAI	CASTG	1 cut(s)	267
TseFI	GTSAC	4 cut(s)	215, 442, 482, 560
TseI	GCWGC	2 cut(s)	49, 59
Tsp45I	GTSAC	4 cut(s)	215, 442, 482, 560
TspRI	CASTG	1 cut(s)	267
Van91I	CCANNNNNTGG	1 cut(s)	607
XapI	RAATTY	2 cut(s)	146, 520
XceI	RCATGY	1 cut(s)	144
XspI	CTAG	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.