Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0006412

Physical Location & Seq

Genomic Coordinates Forward (+)

23008310 .. 23009419

Gene Structure 1110 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g21920.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGGCTTTCTCTAACTCCATGGCCGTTTTATATGTGCTTCTGGTAGCGGTGCCCATGGCTGCTTTCACCTTGGACTGGCCGGATAACTTAGCTCCTACTATTGCCGCTGAAATATGTAAACAAGTTGAGTGTGGAAGGGGAGCATGCAAATTCGACATGAACGAACCATTAGGTTTCACCTGCGAGTGCGAAGCGAACTGGAAGCGCACGTTTGATGGGGACGACGATCTGAAGTTTCTCCCCTGTGTCATCCCCAACTGTACGCTGGACTACAACTGCCAGCCAGCTCCACCTTCAGTTCCTAAGAGAGAAGTCCCTCACAATTTATCTGCCTTTGATCCTTGTTACTGGTCTTACTGCGGAGAAGGTAACTGTGTAAGGAACAGCACGTACAATTACGCACCCATCTGTGAATGCAAATCCGGTTCCTCTAATCTTCTCAACGTCACAGCATTTCCCTGCTACAATGAATTTCAGGCACGCTTCAACCCGACTGCGCGAGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

169

Amino Acids

18.67

Weight (kDa)

4.69

Isoelectric Point (pI)

44.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006412)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_6g03170 FvH4_6g03180
malus_domestica	MD04G1222300.v1.1 MD04G1222400.v1.1 MD12G1238500.v1.1
prunus_persica	Prupe.6G341400_v2.0.a1
pyrus_communis	pycom04g19670 pycom12g21920
rosa_chinensis	RchiOBHm_Chr3g0451431 RchiOBHm_Chr3g0451451
rosa_laevigata	RLG00000025659 RLG00000025660
rosa_multiflora	Rmu_sc0002575.1_g000001 Rmu_sc0009360.1_g000055 Rmu_sc0021369.1_g000004 Rmu_ssc0000091.1_g000020
rosa_roxburghii	Rroxscaffold_164G00436480 Rroxscaffold_6G00428850
rosa_rugosa	Rorug02G0633900
rosa_samantha	Rh3AG036800 Rh3AG036900 Rh3BG037400 Rh3CG036000 Rh3DG036900 Rh3DG037000
rosa_wichuraiana	Rw3G002720 Rw3G002730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	188
Acc36I	ACCTGC	1 cut(s)	188
AccB1I	GGYRCC	1 cut(s)	49
AccII	CGCG	1 cut(s)	499
AciI	CCGC	3 cut(s)	47, 105, 360
AclWI	GGATC	1 cut(s)	332
AcoI	YGGCCR	2 cut(s)	21, 77
AcsI	RAATTY	2 cut(s)	149, 470
AcuI	CTGAAG	2 cut(s)	251, 279
AfaI	GTAC	2 cut(s)	262, 392
AfiI	CCNNNNNNNGG	1 cut(s)	75
AgsI	TTSAA	1 cut(s)	487
AluBI	AGCT	2 cut(s)	92, 287
AluI	AGCT	2 cut(s)	92, 287
AlwI	GGATC	1 cut(s)	332
AoxI	GGCC	2 cut(s)	21, 77
ApeKI	GCWGC	1 cut(s)	59
ApoI	RAATTY	2 cut(s)	149, 470
AspLEI	GCGC	2 cut(s)	207, 499
AsuHPI	GGTGA	2 cut(s)	58, 169
BaeGI	GKGCMC	1 cut(s)	54
BanI	GGYRCC	1 cut(s)	49
BbvI	GCAGC	1 cut(s)	46
BccI	CCATC	2 cut(s)	209, 413
BceAI	ACGGC	1 cut(s)	8
BfaI	CTAG	1 cut(s)	505
BfuAI	ACCTGC	1 cut(s)	188
BisI	GCNGC	2 cut(s)	60, 105
BlsI	GCNGC	2 cut(s)	61, 106
BmiI	GGNNCC	2 cut(s)	51, 427
BsaAI	YACGTR	1 cut(s)	390
BsaJI	CCNNGG	3 cut(s)	18, 54, 69
BsaWI	WCCGGW	1 cut(s)	422
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse1I	ACTGG	3 cut(s)	80, 203, 353
BseDI	CCNNGG	3 cut(s)	18, 54, 69
BseGI	GGATG	1 cut(s)	249
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseNI	ACTGG	3 cut(s)	80, 203, 353
BseSI	GKGCMC	1 cut(s)	54
BseXI	GCAGC	1 cut(s)	46
Bsh1236I	CGCG	1 cut(s)	499
BshFI	GGCC	2 cut(s)	23, 79
BshNI	GGYRCC	1 cut(s)	49
BsiSI	CCGG	2 cut(s)	80, 423
BslFI	GGGAC	2 cut(s)	233, 299
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmFI	GGGAC	2 cut(s)	233, 299
BsmI	GAATGC	1 cut(s)	419
BsnI	GGCC	2 cut(s)	23, 79
Bsp1286I	GDGCHC	1 cut(s)	54
Bsp143I	GATC	2 cut(s)	226, 337
Bsp19I	CCATGG	2 cut(s)	18, 54
BspACI	CCGC	3 cut(s)	47, 105, 360
BspANI	GGCC	2 cut(s)	23, 79
BspFNI	CGCG	1 cut(s)	499
BspLI	GGNNCC	2 cut(s)	51, 427
BspMI	ACCTGC	1 cut(s)	188
BspPI	GGATC	1 cut(s)	332
BspT107I	GGYRCC	1 cut(s)	49
BsrI	ACTGG	3 cut(s)	80, 203, 353
BssECI	CCNNGG	3 cut(s)	18, 54, 69
BssMI	GATC	2 cut(s)	226, 337
BssT1I	CCWWGG	3 cut(s)	18, 54, 69
Bst4CI	ACNGT	2 cut(s)	260, 374
BstBAI	YACGTR	1 cut(s)	390
BstC8I	GCNNGC	4 cut(s)	145, 281, 285, 481
BstDEI	CTNAG	2 cut(s)	88, 303
BstDSI	CCRYGG	2 cut(s)	18, 54
BstF5I	GGATG	1 cut(s)	249
BstFNI	CGCG	1 cut(s)	499
BstHHI	GCGC	2 cut(s)	207, 499
BstKTI	GATC	2 cut(s)	229, 340
BstMBI	GATC	2 cut(s)	226, 337
BstNSI	RCATGY	1 cut(s)	147
BstSLI	GKGCMC	1 cut(s)	54
BstUI	CGCG	1 cut(s)	499
BstV1I	GCAGC	1 cut(s)	46
BsuRI	GGCC	2 cut(s)	23, 79
BtgI	CCRYGG	2 cut(s)	18, 54
BtsCI	GGATG	1 cut(s)	249
BveI	ACCTGC	1 cut(s)	188
Cac8I	GCNNGC	4 cut(s)	145, 281, 285, 481
CfoI	GCGC	2 cut(s)	207, 499
Csp6I	GTAC	2 cut(s)	261, 391
CviAII	CATG	4 cut(s)	19, 55, 144, 157
CviJI	RGCY	7 cut(s)	5, 23, 59, 79, 92, 283, 287
CviKI_1	RGCY	7 cut(s)	5, 23, 59, 79, 92, 283, 287
CviQI	GTAC	2 cut(s)	261, 391
DdeI	CTNAG	2 cut(s)	88, 303
DpnI	GATC	2 cut(s)	228, 339
DpnII	GATC	2 cut(s)	226, 337
EaeI	YGGCCR	2 cut(s)	21, 77
Eco130I	CCWWGG	3 cut(s)	18, 54, 69
Eco57I	CTGAAG	2 cut(s)	251, 279
EcoT14I	CCWWGG	3 cut(s)	18, 54, 69
ErhI	CCWWGG	3 cut(s)	18, 54, 69
FaeI	CATG	4 cut(s)	22, 58, 147, 160
FaiI	YATR	7 cut(s)	20, 31, 33, 56, 115, 145, 158
FaqI	GGGAC	2 cut(s)	233, 299
FatI	CATG	4 cut(s)	18, 54, 143, 156
Fnu4HI	GCNGC	2 cut(s)	60, 105
FokI	GGATG	1 cut(s)	236
Fsp4HI	GCNGC	2 cut(s)	60, 105
FspBI	CTAG	1 cut(s)	505
GlaI	GCGC	2 cut(s)	206, 498
GluI	GCNGC	2 cut(s)	60, 105
HaeIII	GGCC	2 cut(s)	23, 79
HapII	CCGG	2 cut(s)	80, 423
HhaI	GCGC	2 cut(s)	207, 499
Hin1II	CATG	4 cut(s)	22, 58, 147, 160
Hin6I	GCGC	2 cut(s)	205, 497
HinP1I	GCGC	2 cut(s)	205, 497
HinfI	GANTC	1 cut(s)	501
HpaII	CCGG	2 cut(s)	80, 423
HphI	GGTGA	2 cut(s)	58, 169
Hpy166II	GTNNAC	1 cut(s)	119
Hpy188I	TCNGA	1 cut(s)	231
Hpy8I	GTNNAC	1 cut(s)	119
Hpy99I	CGWCG	1 cut(s)	227
HpyAV	CCTTC	3 cut(s)	129, 303, 359
HpyCH4III	ACNGT	2 cut(s)	260, 374
HpyCH4IV	ACGT	3 cut(s)	209, 389, 444
HpyCH4V	TGCA	2 cut(s)	147, 417
HpyF3I	CTNAG	2 cut(s)	88, 303
HpySE526I	ACGT	3 cut(s)	209, 389, 444
Hsp92II	CATG	4 cut(s)	22, 58, 147, 160
HspAI	GCGC	2 cut(s)	205, 497
Kzo9I	GATC	2 cut(s)	226, 337
LmnI	GCTCC	3 cut(s)	97, 140, 292
Lsp1109I	GCAGC	1 cut(s)	46
MaeI	CTAG	1 cut(s)	505
MaeII	ACGT	3 cut(s)	209, 389, 444
MaeIII	GTNAC	3 cut(s)	344, 368, 445
MalI	GATC	2 cut(s)	228, 339
MboI	GATC	2 cut(s)	226, 337
MboII	GAAGA	1 cut(s)	428
MhlI	GDGCHC	1 cut(s)	54
MluCI	AATT	4 cut(s)	149, 322, 394, 470
MnlI	CCTC	2 cut(s)	327, 439
MspA1I	CMGCKG	1 cut(s)	107
MspI	CCGG	2 cut(s)	80, 423
Mva1269I	GAATGC	1 cut(s)	419
MvnI	CGCG	1 cut(s)	499
NcoI	CCATGG	2 cut(s)	18, 54
NdeII	GATC	2 cut(s)	226, 337
NlaIII	CATG	4 cut(s)	22, 58, 147, 160
NlaIV	GGNNCC	2 cut(s)	51, 427
NmuCI	GTSAC	1 cut(s)	445
NspI	RCATGY	1 cut(s)	147
PaeI	GCATGC	1 cut(s)	147
PaqCI	CACCTGC	1 cut(s)	188
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PctI	GAATGC	1 cut(s)	419
PkrI	GCNGC	2 cut(s)	61, 106
Ppu21I	YACGTR	1 cut(s)	390
PspN4I	GGNNCC	2 cut(s)	51, 427
PsrI	GAACNNNNNNTAC	2 cut(s)	374, 406
RsaI	GTAC	2 cut(s)	262, 392
RsaNI	GTAC	2 cut(s)	261, 391
SatI	GCNGC	2 cut(s)	60, 105
Sau3AI	GATC	2 cut(s)	226, 337
SduI	GDGCHC	1 cut(s)	54
SphI	GCATGC	1 cut(s)	147
Sse9I	AATT	4 cut(s)	149, 322, 394, 470
SsiI	CCGC	3 cut(s)	47, 105, 360
SspMI	CTAG	1 cut(s)	505
StyI	CCWWGG	3 cut(s)	18, 54, 69
TaaI	ACNGT	2 cut(s)	260, 374
TaiI	ACGT	3 cut(s)	212, 392, 447
TaqI	TCGA	1 cut(s)	153
TasI	AATT	4 cut(s)	149, 322, 394, 470
TauI	GCSGC	1 cut(s)	107
TseFI	GTSAC	1 cut(s)	445
TseI	GCWGC	1 cut(s)	59
Tsp45I	GTSAC	1 cut(s)	445
TspDTI	ATGAA	2 cut(s)	173, 483
XapI	RAATTY	2 cut(s)	149, 470
XceI	RCATGY	1 cut(s)	147
XcmI	CCANNNNNNNNNTGG	1 cut(s)	262
XspI	CTAG	1 cut(s)	505

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.